pycom09g09940

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012450
Physical Location & Seq
Reverse (-)
8057041 .. 8057803
763 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09940.1

Sequence Viewer

Length: 531 bp
ATGGCAGGGGAAGATGAGGACTTGCCCAGAGACGCCAAGATTGTGAAGACGCTACTAAAGTCGATGGGTGTGGAGGAGTATGAACCTCGTGTTATTCACCAATTCTTGGAGCTGTGGTATCGATATGTTGTTGATGTGCTCAGTGATGCACAGGTCTACTCCGAACATGCTGGTAAAGCTGCAATTGATTGTGACGATGTCAAGCTTGCTATTCAGAGCAAGGTTAATTTTAGCTTTTCACAACCCCCGCCAAGAGAGGTTTTACTGGAGTTGGCTAGAAACAGAAACAAAATCCCATTACCGAAATCAATTGCTGGGCCTGGGGTGGCATTGCCGCCTGAACAAGACACATTGATCAGCCCGAACTATCAACTGGCAATCCCAAAGAAACAACCAACCCAAGCAATGGAAGAAATGGAGGAGGATGAAGAGCCTTCTGAACCAAATCCACCCCAAGAACCGAAGCCCTCTGATGTGCCGCAGAACACTCCCCAAAGGGTATCCTTCCCCATCACTAAACGCACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

177

Amino Acids

19.84

Weight (kDa)

4.9

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID-31kDa PF02291 6 - 125 7e-50 Transcription initiation factor IID, 31kD subunit
CENP-S PF15630 26 - 71 1.5e-06 CENP-S protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54140
fragaria_vesca FvH4_6g34870 FvH4_6g34870
malus_domestica MD09G1181700.v1.1
prunus_persica Prupe.3G039800_v2.0.a1
pyrus_communis pycom09g09940
rosa_chinensis RchiOBHm_Chr2g0145741
rosa_laevigata RLG00000010130 RLG00000020165
rosa_multiflora Rmu_sc0000473.1_g000008
rosa_roxburghii Rroxscaffold_152G00434720 Rroxscaffold_2G00100480
rosa_rugosa Rorug02G0392900 Rorug02G0393000
rosa_samantha Rh2AG447300 Rh2BG459600 Rh2CG434300 Rh2DG469100
rosa_wichuraiana Rw2G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 106, 406
AccI GTMKAC 1 cut(s) 156
AciI CCGC 3 cut(s) 248, 335, 479
AcyI GRCGYC 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 528
AfiI CCNNNNNNNGG 2 cut(s) 106, 406
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 4 cut(s) 112, 179, 205, 234
AluI AGCT 4 cut(s) 112, 179, 205, 234
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 24
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 89
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 58, 518
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 511
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 276
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 3 cut(s) 180, 335, 479
BlsI GCNGC 3 cut(s) 181, 336, 480
Bme1390I CCNGG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 406
Bse1I ACTGG 2 cut(s) 270, 378
Bse3DI GCAATG 2 cut(s) 329, 411
BseBI CCWGG 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 106, 406
BseMI GCAATG 2 cut(s) 329, 411
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 270, 378
BseRI GAGGAG 2 cut(s) 89, 434
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 314
BshFI GGCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 106, 406
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 3 cut(s) 248, 335, 479
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 153
BspDI ATCGAT 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 329, 411
BsrI ACTGG 2 cut(s) 270, 378
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 1 cut(s) 354
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 430
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 121
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 121
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 121
CseI GACGC 2 cut(s) 41, 58
CviAII CATG 1 cut(s) 167
CviJI RGCY 9 cut(s) 112, 179, 205, 234, 275, 319, 360, 433, 466
CviKI_1 RGCY 9 cut(s) 112, 179, 205, 234, 275, 319, 360, 433, 466
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
DraIII CACNNNGTG 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 170
FaiI YATR 3 cut(s) 81, 126, 168
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 255
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 180, 335, 479
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 3 cut(s) 180, 335, 479
FspBI CTAG 1 cut(s) 276
GluI GCNGC 3 cut(s) 180, 335, 479
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 319
HgaI GACGC 2 cut(s) 41, 58
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 203
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 4 cut(s) 163, 216, 439, 472
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 444, 514
HpyCH4V TGCA 2 cut(s) 149, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 1 cut(s) 354
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 9 cut(s) 40, 137, 156, 251, 300, 306, 333, 351, 359
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 4 cut(s) 23, 58, 422, 440
MfeI CAATTG 2 cut(s) 183, 309
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 4 cut(s) 101, 183, 226, 309
MnlI CCTC 7 cut(s) 10, 67, 96, 250, 412, 415, 478
MseI TTAA 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 2 cut(s) 183, 309
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 423
PflFI GACNNNGTC 1 cut(s) 197
PflMI CCANNNNNTGG 2 cut(s) 106, 406
PkrI GCNGC 3 cut(s) 181, 336, 480
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 319
PspPI GGNCC 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 3 cut(s) 180, 335, 479
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 141
SetI ASST 8 cut(s) 88, 114, 156, 181, 207, 225, 236, 261
SfaNI GCATC 1 cut(s) 136
Sse9I AATT 4 cut(s) 101, 183, 226, 309
SsiI CCGC 3 cut(s) 248, 335, 479
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 319
TaqI TCGA 2 cut(s) 62, 121
TasI AATT 4 cut(s) 101, 183, 226, 309
TauI GCSGC 2 cut(s) 337, 481
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 96, 441
TspRI CASTG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 197
Van91I CCANNNNNTGG 2 cut(s) 106, 406
XceI RCATGY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.