FvH4_6g34870

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012450
Physical Location & Seq
Forward (+)
27530158 .. 27532007
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34870.t1

Sequence Viewer

Length: 531 bp
ATGGCAGGGGAAGAAGAGGACTTGCCGAGAGATGCAAAGATTGTGAAGACGCTGCTAAAGTCAATGGGAGTGGAGGACTATGAGCCTCGGGTTATTCACCAATTCTTGGAGCTATGGTATCGATACGTGGTGGATGTACTCTCTGATGCTCAAGTTTACTCTGAACACGCAGGCAAGGGTTCCATTGATTGCGATGATGTCAAGCTTGCCATTCAGTCCAAGGTCAATTTCAGCTTCTCGCAGCCCCCTCCAAGAGAGGTTCTACTGGAGTTGGCCAGAAACAGGAACAAAATCCCACTGCCAAAATCCATCTCAGGGCCGGGTGTGGCGCTTCCACCTGACCAGGACACCTTAATCAGCCCAAATTATCAACTGGCATTCCCAAAGAAACAAGCAGCTCAACCAGTTGAAGAAATGGAAGAAGATGAAGAAGCTGTTGAACCCAATCCACCCCAAGAGCAGAAGCCTACCGATCTGCCGCAGAATACACCCCACAGGGTATCTTTCCCCCTTGTGAAACGCAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

177

Amino Acids

19.87

Weight (kDa)

4.88

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID-31kDa PF02291 6 - 125 1.6e-49 Transcription initiation factor IID, 31kD subunit
CENP-S PF15630 26 - 71 6.1e-06 CENP-S protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54140
fragaria_vesca FvH4_6g34870 FvH4_6g34870
malus_domestica MD09G1181700.v1.1
prunus_persica Prupe.3G039800_v2.0.a1
pyrus_communis pycom09g09940
rosa_chinensis RchiOBHm_Chr2g0145741
rosa_laevigata RLG00000010130 RLG00000020165
rosa_multiflora Rmu_sc0000473.1_g000008
rosa_roxburghii Rroxscaffold_152G00434720 Rroxscaffold_2G00100480
rosa_rugosa Rorug02G0392900 Rorug02G0393000
rosa_samantha Rh2AG447300 Rh2BG459600 Rh2CG434300 Rh2DG469100
rosa_wichuraiana Rw2G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AciI CCGC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 273
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 106, 282, 315
AgsI TTSAA 2 cut(s) 410, 440
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 5 cut(s) 112, 205, 234, 398, 434
AluI AGCT 5 cut(s) 112, 205, 234, 398, 434
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 2 cut(s) 273, 317
ApeKI GCWGC 3 cut(s) 52, 241, 395
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 87
BalI TGGCCA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 3 cut(s) 39, 253, 407
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 344
BcnI CCSGG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 4 cut(s) 53, 242, 396, 479
BlsI GCNGC 4 cut(s) 54, 243, 397, 480
Bme1390I CCNGG 2 cut(s) 321, 344
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 321, 344
BmsI GCATC 2 cut(s) 22, 136
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 321
Bsa29I ATCGAT 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 86, 219
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 282, 315
Bse1I ACTGG 3 cut(s) 270, 378, 404
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 86, 219
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 3 cut(s) 106, 282, 315
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 3 cut(s) 270, 378, 404
BseXI GCAGC 3 cut(s) 39, 253, 407
BshFI GGCC 2 cut(s) 275, 319
BshVI ATCGAT 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 106, 282, 315
BsmI GAATGC 1 cut(s) 377
BsnI GGCC 2 cut(s) 275, 319
BsoBI CYCGRG 1 cut(s) 87
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 1 cut(s) 479
BspANI GGCC 2 cut(s) 275, 319
BspCNI CTCAG 1 cut(s) 326
BspDI ATCGAT 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 181
BsrI ACTGG 3 cut(s) 270, 378, 404
BssECI CCNNGG 2 cut(s) 86, 219
BssMI GATC 1 cut(s) 472
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 172, 207
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 1 cut(s) 475
BstMBI GATC 1 cut(s) 472
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 319, 342
BstV1I GCAGC 3 cut(s) 39, 253, 407
BstV2I GAAGAC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 121
BsuRI GGCC 2 cut(s) 275, 319
BsuTUI ATCGAT 1 cut(s) 121
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 172, 207
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 121
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 313
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaiI YATR 2 cut(s) 81, 115
Fnu4HI GCNGC 4 cut(s) 53, 242, 396, 479
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 53, 242, 396, 479
GlaI GCGC 1 cut(s) 330
GluI GCNGC 4 cut(s) 53, 242, 396, 479
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 2 cut(s) 275, 319
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 203
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 145, 163
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 1 cut(s) 126
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 3 cut(s) 39, 253, 407
LweI GCATC 2 cut(s) 22, 136
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 7 cut(s) 23, 26, 58, 422, 431, 434, 440
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 3 cut(s) 101, 226, 364
MluNI TGGCCA 1 cut(s) 275
MnlI CCTC 5 cut(s) 10, 67, 96, 250, 258
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 321, 344
Mva1269I GAATGC 1 cut(s) 377
MvaI CCWGG 1 cut(s) 344
NciI CCSGG 1 cut(s) 321
NdeII GATC 1 cut(s) 472
NlaIV GGNNCC 1 cut(s) 181
NmeAIII GCCGAG 1 cut(s) 51
PctI GAATGC 1 cut(s) 377
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 4 cut(s) 54, 243, 397, 480
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 317
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 4 cut(s) 53, 242, 396, 479
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 321, 344
SfaNI GCATC 2 cut(s) 22, 136
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
Sse9I AATT 3 cut(s) 101, 226, 364
SsiI CCGC 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 319, 342
StyI CCWWGG 1 cut(s) 219
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 121
TasI AATT 3 cut(s) 101, 226, 364
TatI WGTACW 1 cut(s) 136
TauI GCSGC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 303
TseI GCWGC 3 cut(s) 52, 241, 395
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 1 cut(s) 303
Van91I CCANNNNNTGG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.