RLG00000010130

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012450
Physical Location & Seq
Reverse (-)
63319233 .. 63319957
725 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010130

Sequence Viewer

Length: 531 bp
ATGGCAGGGGAAGATGAGGACTTACCAAGAGATGCAAAGATTGTGAAGACGCTGTTAAAATCAATGGGCGTGGAGGACTATGAACGTCGCGTTATTCACCAATTCTTGGAGCTATGGTATCGGTACGTGGTTGATGTACTCAGTGATGCTCAAGTTTACTCTGATCACGTGGGCAAGGGTGCGATTGATTGCGATGATGTCAAGCTTGCCATTCAGTCTAAGGTCAATTTCAGCTTCTCGCAACCCCCTCCAAGAGAGGTTCTATTGGAGTTGGCCAGAAACAGGAACAAAATTGCATTACCAAAATCCATCTCAAGGCCTGGTGTGTCGCTACCACCTGACCAGGATACCTTAATCAGCCCAAATTATCAACTGGCAATTCCTAAGAAACGACCAGCTCAAGCAGTTGAAGAAATGGAAGAGGATGAAGAAACTGTTGAACCTAATCCACCCCAAGAGCAGAAGCCTACCGATATACTGCAGAATACACCCCAAAGGGTATCTTTTCCCCTTGCCAAACGCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

177

Amino Acids

20.0

Weight (kDa)

5.19

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID-31kDa PF02291 6 - 125 7.4e-48 Transcription initiation factor IID, 31kD subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54140
fragaria_vesca FvH4_6g34870 FvH4_6g34870
malus_domestica MD09G1181700.v1.1
prunus_persica Prupe.3G039800_v2.0.a1
pyrus_communis pycom09g09940
rosa_chinensis RchiOBHm_Chr2g0145741
rosa_laevigata RLG00000010130 RLG00000020165
rosa_multiflora Rmu_sc0000473.1_g000008
rosa_roxburghii Rroxscaffold_152G00434720 Rroxscaffold_2G00100480
rosa_rugosa Rorug02G0392900 Rorug02G0393000
rosa_samantha Rh2AG447300 Rh2BG459600 Rh2CG434300 Rh2DG469100
rosa_wichuraiana Rw2G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AccII CGCG 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 273
AcvI CACGTG 1 cut(s) 169
AdeI CACNNNGTG 1 cut(s) 528
AfaI GTAC 2 cut(s) 125, 138
AfiI CCNNNNNNNGG 3 cut(s) 106, 282, 315
AgsI TTSAA 2 cut(s) 410, 440
AjnI CCWGG 2 cut(s) 319, 342
AluBI AGCT 4 cut(s) 112, 205, 234, 398
AluI AGCT 4 cut(s) 112, 205, 234, 398
AoxI GGCC 2 cut(s) 273, 317
AsuHPI GGTGA 1 cut(s) 89
BalI TGGCCA 1 cut(s) 275
BbrPI CACGTG 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 321, 344
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 479
BfuI GTATCC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 321, 344
BmrFI CCNGG 2 cut(s) 321, 344
BmsI GCATC 2 cut(s) 22, 136
BpiI GAAGAC 1 cut(s) 53
BpuEI CTTGAG 3 cut(s) 135, 298, 384
BsaAI YACGTR 2 cut(s) 127, 169
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 282, 315
Bse1I ACTGG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 321, 344
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 3 cut(s) 106, 282, 315
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 275, 319
BslI CCNNNNNNNGG 3 cut(s) 106, 282, 315
BsnI GGCC 2 cut(s) 275, 319
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 2 cut(s) 275, 319
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 483
BsrI ACTGG 1 cut(s) 378
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 321, 344
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 414
BstBAI YACGTR 2 cut(s) 127, 169
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 140, 219, 384
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstNI CCWGG 2 cut(s) 321, 344
BstSCI CCNGG 2 cut(s) 319, 342
BstSFI CTRYAG 1 cut(s) 479
BstUI CGCG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 53
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 275, 319
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 207
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 124, 137
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviJI RGCY 8 cut(s) 112, 205, 234, 275, 319, 360, 398, 466
CviKI_1 RGCY 8 cut(s) 112, 205, 234, 275, 319, 360, 398, 466
CviQI GTAC 2 cut(s) 124, 137
DdeI CTNAG 3 cut(s) 140, 219, 384
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraIII CACNNNGTG 1 cut(s) 528
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco147I AGGCCT 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 319, 342
FaiI YATR 3 cut(s) 81, 115, 476
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FbaI TGATCA 1 cut(s) 163
FokI GGATG 1 cut(s) 437
HaeIII GGCC 2 cut(s) 275, 319
HgaI GACGC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 203
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 90
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 3 cut(s) 85, 126, 168
HpyCH4V TGCA 3 cut(s) 35, 296, 481
HpyF3I CTNAG 3 cut(s) 140, 219, 384
HpySE526I ACGT 3 cut(s) 85, 126, 168
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 9 cut(s) 268, 289, 306, 329, 333, 351, 356, 359, 408
LweI GCATC 2 cut(s) 22, 136
MaeII ACGT 3 cut(s) 85, 126, 168
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 5 cut(s) 23, 58, 422, 431, 440
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 5 cut(s) 101, 226, 291, 364, 378
MluNI TGGCCA 1 cut(s) 275
MnlI CCTC 5 cut(s) 10, 67, 250, 258, 415
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 56, 353
Msp20I TGGCCA 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 321, 344
MvaI CCWGG 2 cut(s) 321, 344
MvnI CGCG 1 cut(s) 90
NdeII GATC 1 cut(s) 163
PceI AGGCCT 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 106
PmaCI CACGTG 1 cut(s) 169
PmlI CACGTG 1 cut(s) 169
Ppu21I YACGTR 2 cut(s) 127, 169
Psp6I CCWGG 2 cut(s) 319, 342
PspCI CACGTG 1 cut(s) 169
PspGI CCWGG 2 cut(s) 319, 342
PstI CTGCAG 1 cut(s) 483
RsaI GTAC 2 cut(s) 125, 138
RsaNI GTAC 2 cut(s) 124, 137
SaqAI TTAA 2 cut(s) 56, 353
Sau3AI GATC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 321, 344
SfaNI GCATC 2 cut(s) 22, 136
SfcI CTRYAG 1 cut(s) 479
SmlI CTYRAG 3 cut(s) 150, 313, 399
SmoI CTYRAG 3 cut(s) 150, 313, 399
Sse9I AATT 5 cut(s) 101, 226, 291, 364, 378
SseBI AGGCCT 1 cut(s) 319
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 2 cut(s) 319, 342
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 3 cut(s) 88, 129, 171
TasI AATT 5 cut(s) 101, 226, 291, 364, 378
TatI WGTACW 1 cut(s) 136
Tru1I TTAA 2 cut(s) 56, 353
Tru9I TTAA 2 cut(s) 56, 353
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 96, 441
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.