RchiOBHm_Chr2g0145741

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012450
Physical Location & Seq
Forward (+)
63511712 .. 63514217
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51557

Sequence Viewer

Length: 531 bp
ATGGCAGGGGAAGATGAGGACTTACCAAGAGACGCAAAGATTGTGAAGACGCTATTAAAATCAATGGGTGTGGAGGAATATGAACCTCGCGTTATTCACCAATTCTTGGAGCTATGGTATCGGTACGTGGTCGATGTACTCAGTGATGCCCAAGTTTACTCTGATCACGCGGGCAAGGGTGCGATTGATTGTGATGATGTCAAGCTTGCCATTCAGTCCAAGGTCAATTTCAGCTTCTCGCAACCCCCTCCAAGGGAGGTTCTACTGGAGTTGGCCAGAAACAGGAACAAAATTCCATTACCAAAATCCATCTCAGGGCCTGGTGTGGCGCTACCACCTGACCAGGATACCTTGATCAGCCCAAATTATCAATTGGCAGTCCCTAAGAAACGACCAGCTCAAGCAGTTGAAGAAATGGAAGAGGATGAAGAAACTGTTGAACCCAATCCACCCCAAGAGCAGAAGCCTACTGATATACCGCAGAATACATCCCAAAAGGTATCTTTTCCCCTTGCTAAACGCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

176

Amino Acids

19.77

Weight (kDa)

4.97

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID-31kDa PF02291 6 - 125 2e-49 Transcription initiation factor IID, 31kD subunit
CENP-S PF15630 26 - 71 6.8e-06 CENP-S protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54140
fragaria_vesca FvH4_6g34870 FvH4_6g34870
malus_domestica MD09G1181700.v1.1
prunus_persica Prupe.3G039800_v2.0.a1
pyrus_communis pycom09g09940
rosa_chinensis RchiOBHm_Chr2g0145741
rosa_laevigata RLG00000010130 RLG00000020165
rosa_multiflora Rmu_sc0000473.1_g000008
rosa_roxburghii Rroxscaffold_152G00434720 Rroxscaffold_2G00100480
rosa_rugosa Rorug02G0392900 Rorug02G0393000
rosa_samantha Rh2AG447300 Rh2BG459600 Rh2CG434300 Rh2DG469100
rosa_wichuraiana Rw2G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AccII CGCG 2 cut(s) 90, 170
AciI CCGC 2 cut(s) 170, 479
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 528
AfaI GTAC 2 cut(s) 125, 138
AfiI CCNNNNNNNGG 5 cut(s) 106, 252, 253, 282, 315
AgsI TTSAA 2 cut(s) 410, 440
AjnI CCWGG 2 cut(s) 319, 342
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 4 cut(s) 112, 205, 234, 398
AluI AGCT 4 cut(s) 112, 205, 234, 398
Alw26I GTCTC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 2 cut(s) 273, 317
ApoI RAATTY 1 cut(s) 291
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 89
BalI TGGCCA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 321, 344
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 2 cut(s) 163, 354
BcoDI GTCTC 1 cut(s) 24
BfoI RGCGCY 1 cut(s) 332
BfuI GTATCC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 321, 344
BmgT120I GGNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 321, 344
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 219, 251
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 252, 253, 282, 315
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 321, 344
BseDI CCNNGG 2 cut(s) 219, 251
BseGI GGATG 2 cut(s) 430, 488
BseLI CCNNNNNNNGG 5 cut(s) 106, 252, 253, 282, 315
BseMII CTCAG 2 cut(s) 154, 327
BseNI ACTGG 1 cut(s) 270
Bsh1236I CGCG 2 cut(s) 90, 170
BshFI GGCC 2 cut(s) 275, 319
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 5 cut(s) 106, 252, 253, 282, 315
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 275, 319
Bsp143I GATC 2 cut(s) 163, 354
BspACI CCGC 2 cut(s) 170, 479
BspANI GGCC 2 cut(s) 275, 319
BspCNI CTCAG 2 cut(s) 153, 326
BspFNI CGCG 2 cut(s) 90, 170
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 219, 251
BssMI GATC 2 cut(s) 163, 354
BssT1I CCWWGG 2 cut(s) 219, 251
Bst2UI CCWGG 2 cut(s) 321, 344
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 172, 207
BstDEI CTNAG 3 cut(s) 140, 313, 384
BstF5I GGATG 2 cut(s) 430, 488
BstFNI CGCG 2 cut(s) 90, 170
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 2 cut(s) 166, 357
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 163, 354
BstNI CCWGG 2 cut(s) 321, 344
BstSCI CCNGG 2 cut(s) 319, 342
BstUI CGCG 2 cut(s) 90, 170
BstV2I GAAGAC 1 cut(s) 53
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 275, 319
BtsCI GGATG 2 cut(s) 430, 488
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 172, 207
CaiI CAGNNNCTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 2 cut(s) 41, 58
Csp6I GTAC 2 cut(s) 124, 137
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviJI RGCY 8 cut(s) 112, 205, 234, 275, 319, 360, 398, 466
CviKI_1 RGCY 8 cut(s) 112, 205, 234, 275, 319, 360, 398, 466
CviQI GTAC 2 cut(s) 124, 137
DdeI CTNAG 3 cut(s) 140, 313, 384
DpnI GATC 2 cut(s) 165, 356
DpnII GATC 2 cut(s) 163, 354
DraIII CACNNNGTG 1 cut(s) 528
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 219, 251
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 319, 342
EcoT14I CCWWGG 2 cut(s) 219, 251
ErhI CCWWGG 2 cut(s) 219, 251
Esp3I CGTCTC 1 cut(s) 24
FaiI YATR 3 cut(s) 81, 115, 476
FaqI GGGAC 1 cut(s) 365
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 2 cut(s) 163, 354
FokI GGATG 2 cut(s) 437, 475
GlaI GCGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 2 cut(s) 275, 319
HgaI GACGC 2 cut(s) 41, 58
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 203
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 126
HpyF3I CTNAG 3 cut(s) 140, 313, 384
HpySE526I ACGT 1 cut(s) 126
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 2 cut(s) 163, 354
Kzo9I GATC 2 cut(s) 163, 354
LmnI GCTCC 1 cut(s) 109
LweI GCATC 1 cut(s) 136
MaeII ACGT 1 cut(s) 126
MalI GATC 2 cut(s) 165, 356
MboI GATC 2 cut(s) 163, 354
MboII GAAGA 5 cut(s) 23, 58, 422, 431, 440
MfeI CAATTG 1 cut(s) 371
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 5 cut(s) 101, 226, 291, 364, 371
MluNI TGGCCA 1 cut(s) 275
MnlI CCTC 6 cut(s) 10, 67, 96, 250, 258, 415
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 321, 344
MunI CAATTG 1 cut(s) 371
MvaI CCWGG 2 cut(s) 321, 344
MvnI CGCG 2 cut(s) 90, 170
NdeII GATC 2 cut(s) 163, 354
PflMI CCANNNNNTGG 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 319, 342
PspGI CCWGG 2 cut(s) 319, 342
PspPI GGNCC 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 125, 138
RsaNI GTAC 2 cut(s) 124, 137
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 2 cut(s) 163, 354
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 321, 344
SfaNI GCATC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 5 cut(s) 101, 226, 291, 364, 371
SsiI CCGC 2 cut(s) 170, 479
StyD4I CCNGG 2 cut(s) 319, 342
StyI CCWWGG 2 cut(s) 219, 251
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 132
TasI AATT 5 cut(s) 101, 226, 291, 364, 371
TatI WGTACW 1 cut(s) 136
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 96, 441
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 106
XapI RAATTY 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.