Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016894

Physical Location & Seq

Genomic Coordinates Reverse (-)

15646510 .. 15646926

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1181800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTGCTGCTGCTGCTGCTACTACAAGCTATCCATACACAAGCCAAAACTCATCTTCTCAAAGATCAGTGGCCATGGTGCTTGCTCTAGTATCTGCAATTGTTCTTTCACCTATCTATACAAACCCTAGAAAAAGCAGTGATGCAAGATACCACGAAGCAAAATGGAGCTCTGGGTTTGTTCTTCCCATGATTCTTGCCGGACTTATCATTGCCATCAAAACCACTTCTTCATCATCATCGAGTTCGTCAGCTACTTCGTTGTCGTCGACTCGAGGAGATTCTTCTATTCCTTCTTCTGATCCTTCGTGGGTTCTGAGAATTGGGAGCTCGTCCTGGGGGCTTGCTGGGGTTTTGGTGATGCTGATGTTTGTGCTTTCTTGGCAAGGTTCTGTTCATGAATTCTTGTGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.61

Weight (kDa)

9.86

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016894)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34840
malus_domestica	MD09G1181800.v1.1
prunus_persica	Prupe.3G039900_v2.0.a1
pyrus_communis	pycom17g15980
rosa_chinensis	RchiOBHm_Chr2g0145711
rosa_laevigata	RLG00000020164
rosa_multiflora	Rmu_sc0000473.1_g000009
rosa_roxburghii	Rroxscaffold_152G00434710 Rroxscaffold_2G00100490
rosa_rugosa	Rorug02G0392900
rosa_samantha	Rh2BG459500 Rh2CG434100 Rh2DG468900
rosa_wichuraiana	Rw2G036540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	4 cut(s)	30, 171, 254, 330
AluI	AGCT	4 cut(s)	30, 171, 254, 330
Alw21I	GWGCWC	2 cut(s)	173, 332
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	5 cut(s)	5, 8, 11, 14, 17
ApoI	RAATTY	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	102, 370
AvaI	CYCGRG	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	2 cut(s)	173, 332
Bbv12I	GWGCWC	2 cut(s)	173, 332
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	337
BfaI	CTAG	2 cut(s)	89, 129
BisI	GCNGC	5 cut(s)	6, 9, 12, 15, 18
BlsI	GCNGC	5 cut(s)	7, 10, 13, 16, 19
Bme1390I	CCNGG	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	2 cut(s)	133, 351
BsaJI	CCNNGG	2 cut(s)	75, 336
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	75, 336
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	347
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	173, 332
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	201
BsnI	GGCC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	173, 332
Bsp143I	GATC	2 cut(s)	65, 301
Bsp19I	CCATGG	1 cut(s)	75
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	397
BspPI	GGATC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	75, 336
BssMI	GATC	2 cut(s)	65, 301
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	84, 345
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	68, 304
BstMBI	GATC	2 cut(s)	65, 301
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 17, 382
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	75, 145
Cac8I	GCNNGC	2 cut(s)	84, 345
CciI	TCATGA	1 cut(s)	397
CviAII	CATG	3 cut(s)	76, 190, 398
CviJI	RGCY	8 cut(s)	5, 30, 45, 74, 171, 254, 330, 343
CviKI_1	RGCY	8 cut(s)	5, 30, 45, 74, 171, 254, 330, 343
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	2 cut(s)	67, 303
DpnII	GATC	2 cut(s)	65, 301
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	2 cut(s)	171, 330
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	173, 332
Eco53kI	GAGCTC	2 cut(s)	171, 330
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	2 cut(s)	171, 330
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	173, 332
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	79, 193, 401
FaiI	YATR	5 cut(s)	37, 77, 120, 191, 399
FatI	CATG	3 cut(s)	75, 189, 397
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 15, 18
FriOI	GRGCYC	2 cut(s)	173, 332
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 15, 18
FspBI	CTAG	2 cut(s)	89, 129
GluI	GCNGC	5 cut(s)	6, 9, 12, 15, 18
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	3 cut(s)	79, 193, 401
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	193, 271, 281
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	102, 370
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	301, 318
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	303, 315
HpyCH4V	TGCA	2 cut(s)	98, 146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 17, 382
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	79, 193, 401
Kzo9I	GATC	2 cut(s)	65, 301
LmnI	GCTCC	2 cut(s)	168, 327
LpnPI	CCDG	5 cut(s)	159, 214, 322, 333, 349
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	133, 351
MaeI	CTAG	2 cut(s)	89, 129
MalI	GATC	2 cut(s)	67, 303
MboI	GATC	2 cut(s)	65, 301
MboII	GAAGA	5 cut(s)	48, 176, 222, 276, 288
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	173, 332
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	3 cut(s)	99, 321, 401
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	269
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	337
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 17, 382
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	65, 301
NlaIII	CATG	3 cut(s)	79, 193, 401
PaeR7I	CTCGAG	1 cut(s)	273
PagI	TCATGA	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	193, 281
PkrI	GCNGC	5 cut(s)	7, 10, 13, 16, 19
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp124BI	GAGCTC	2 cut(s)	173, 332
Psp6I	CCWGG	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	335
PspXI	VCTCGAGB	1 cut(s)	273
SacI	GAGCTC	2 cut(s)	173, 332
SalI	GTCGAC	1 cut(s)	268
SatI	GCNGC	5 cut(s)	6, 9, 12, 15, 18
Sau3AI	GATC	2 cut(s)	65, 301
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	173, 332
SetI	ASST	6 cut(s)	32, 115, 173, 256, 332, 391
SfaNI	GCATC	2 cut(s)	133, 351
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	99, 321, 401
SspMI	CTAG	2 cut(s)	89, 129
SstI	GAGCTC	2 cut(s)	173, 332
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	242, 269, 274
TasI	AATT	3 cut(s)	99, 321, 401
TfiI	GAWTC	2 cut(s)	193, 281
TscAI	CASTG	2 cut(s)	75, 145
TseI	GCWGC	5 cut(s)	5, 8, 11, 14, 17
TspDTI	ATGAA	3 cut(s)	222, 386, 414
TspRI	CASTG	2 cut(s)	75, 145
XapI	RAATTY	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	2 cut(s)	89, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.