FvH4_6g42690

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018465
Physical Location & Seq
Forward (+)
33212710 .. 33213267
558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42690.t1

Sequence Viewer

Length: 264 bp
ATGACGGCTGCAGATGAGACGTCCGGCGCCGCCACGACGTCATCTTCGCCGTCAACGGTAGCGATCCCGGCCAACCTCGCTCTCGTCTCCGCTTTCCTCGCCTGCGCCGTCGCTCAGTTCCTCAAGCTCTTCACTTCCTGGTATAATTATAGGAGATGGGATTCGAAACGAATGCTGGATTCCGGCGGAATGCCGTCGTCGCATTCGGCTTTGGTGACGGCGCTGACGGTGGCCGTTGGGCTGGACCAGCCTGGACTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

88

Amino Acids

9.02

Weight (kDa)

6.51

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 25 - 83 1.8e-19 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 23, 41
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 3 cut(s) 30, 90, 186
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 2 cut(s) 69, 231
AcyI GRCGYC 3 cut(s) 20, 27, 38
AjnI CCWGG 2 cut(s) 137, 250
AluBI AGCT 2 cut(s) 127, 260
AluI AGCT 2 cut(s) 127, 260
Alw26I GTCTC 2 cut(s) 11, 91
AlwI GGATC 1 cut(s) 58
AoxI GGCC 2 cut(s) 69, 231
ApeKI GCWGC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 3 cut(s) 29, 107, 223
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 26
BccI CCATC 1 cut(s) 150
BceAI ACGGC 6 cut(s) 21, 34, 92, 178, 218, 234
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 2 cut(s) 139, 252
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 11, 91
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 2 cut(s) 30, 224
BisI GCNGC 2 cut(s) 9, 30
BlsI GCNGC 2 cut(s) 10, 31
Bme1390I CCNGG 3 cut(s) 68, 139, 252
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 3 cut(s) 68, 139, 252
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 3 cut(s) 20, 27, 38
BseBI CCWGG 2 cut(s) 139, 252
BseMII CTCAG 1 cut(s) 128
BshFI GGCC 2 cut(s) 71, 233
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 3 cut(s) 24, 68, 183
BsmAI GTCTC 2 cut(s) 11, 91
BsmBI CGTCTC 2 cut(s) 11, 91
BsmI GAATGC 3 cut(s) 177, 195, 202
BsnI GGCC 2 cut(s) 71, 233
Bsp119I TTCGAA 1 cut(s) 164
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 3 cut(s) 30, 90, 186
BspANI GGCC 2 cut(s) 71, 233
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 26
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 3 cut(s) 20, 27, 38
Bst2UI CCWGG 2 cut(s) 139, 252
Bst4CI ACNGT 2 cut(s) 58, 229
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 3 cut(s) 20, 27, 38
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 114, 261
BstH2I RGCGCY 2 cut(s) 30, 224
BstHHI GCGC 3 cut(s) 29, 107, 223
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 2 cut(s) 11, 91
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 5 cut(s) 68, 77, 98, 199, 247
BstNI CCWGG 2 cut(s) 139, 252
BstSCI CCNGG 3 cut(s) 66, 137, 250
BstSFI CTRYAG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 71, 233
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 3 cut(s) 29, 107, 223
Cfr13I GGNCC 1 cut(s) 244
CviJI RGCY 8 cut(s) 8, 71, 127, 209, 233, 241, 250, 260
CviKI_1 RGCY 8 cut(s) 8, 71, 127, 209, 233, 241, 250, 260
DdeI CTNAG 2 cut(s) 114, 261
DinI GGCGCC 1 cut(s) 28
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 69, 231
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 137, 250
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
Esp3I CGTCTC 2 cut(s) 11, 91
FaiI YATR 2 cut(s) 144, 150
Fnu4HI GCNGC 2 cut(s) 9, 30
Fsp4HI GCNGC 2 cut(s) 9, 30
FspBI CTAG 1 cut(s) 257
GlaI GCGC 3 cut(s) 28, 106, 222
GluI GCNGC 2 cut(s) 9, 30
HaeII RGCGCY 2 cut(s) 30, 224
HaeIII GGCC 2 cut(s) 71, 233
HapII CCGG 3 cut(s) 24, 68, 183
HhaI GCGC 3 cut(s) 29, 107, 223
Hin1I GRCGYC 3 cut(s) 20, 27, 38
Hin6I GCGC 3 cut(s) 27, 105, 221
HinP1I GCGC 3 cut(s) 27, 105, 221
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 2 cut(s) 161, 179
HpaII CCGG 3 cut(s) 24, 68, 183
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 4 cut(s) 40, 113, 199, 202
HpyCH4III ACNGT 2 cut(s) 58, 229
HpyCH4IV ACGT 2 cut(s) 20, 38
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 77, 98, 199, 247
HpyF3I CTNAG 2 cut(s) 114, 261
HpySE526I ACGT 2 cut(s) 20, 38
Hsp92I GRCGYC 3 cut(s) 20, 27, 38
HspAI GCGC 3 cut(s) 27, 105, 221
KasI GGCGCC 1 cut(s) 26
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 134
MaeI CTAG 1 cut(s) 257
MaeII ACGT 2 cut(s) 20, 38
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 36, 121
MluCI AATT 1 cut(s) 145
Mly113I GGCGCC 1 cut(s) 27
MnlI CCTC 3 cut(s) 86, 107, 131
MspI CCGG 3 cut(s) 24, 68, 183
MspR9I CCNGG 3 cut(s) 68, 139, 252
Mva1269I GAATGC 3 cut(s) 177, 195, 202
MvaI CCWGG 2 cut(s) 139, 252
MwoI GCNNNNNNNGC 5 cut(s) 68, 77, 98, 199, 247
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 3 cut(s) 177, 195, 202
PfeI GAWTC 2 cut(s) 161, 179
PkrI GCNGC 2 cut(s) 10, 31
PluTI GGCGCC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 137, 250
PspGI CCWGG 2 cut(s) 137, 250
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 134
SatI GCNGC 2 cut(s) 9, 30
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 3 cut(s) 68, 139, 252
SetI ASST 5 cut(s) 23, 41, 78, 129, 262
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 145
SsiI CCGC 3 cut(s) 30, 90, 186
SspDI GGCGCC 1 cut(s) 26
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 3 cut(s) 66, 137, 250
TaaI ACNGT 2 cut(s) 58, 229
TaiI ACGT 2 cut(s) 23, 41
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 145
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 161, 179
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 244
XspI CTAG 1 cut(s) 257
ZraI GACGTC 2 cut(s) 21, 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.