RchiOBHm_Chr7g0199241

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018465
Physical Location & Seq
Forward (+)
17307920 .. 17308168
249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17830

Sequence Viewer

Length: 249 bp
ATGGCAGCGATTTCGGCGAACCTCACTCTCATCTCCGCCTTCCTCGCCTCTGTCGTCGCTCAGTTCCTCAAGCTCTTCACGTCCCGGTACAAAGATAGGAGATGGGATTCGAAACGAATACTGGATTCCGGAGAAAAGTTGTCGTCACATTGGGCGACTGTGACATCGCTGACGGTGGCCGTTGGGCTAGACCAGGGCACCGAAGGACATGCTTTTGCTCTTGCTCAAATTACATATCACCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

82

Amino Acids

9.0

Weight (kDa)

9.3

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 7 - 77 1.5e-16 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 177
AfaI GTAC 1 cut(s) 89
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 96
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 3 cut(s) 28, 191, 225
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 1 cut(s) 85
BfaI CTAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 85, 194
BmgBI CACGTC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 85, 194
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 128
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 197
BsiSI CCGG 2 cut(s) 85, 129
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 128
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 160, 175
Bst6I CTCTTC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 14, 44
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 83, 192
BstSLI GKGCMC 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 209
CviJI RGCY 3 cut(s) 73, 179, 187
CviKI_1 RGCY 3 cut(s) 73, 179, 187
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 212
FaiI YATR 2 cut(s) 210, 235
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 188
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 85, 129
Hin1II CATG 1 cut(s) 212
HinfI GANTC 2 cut(s) 107, 125
HpaII CCGG 2 cut(s) 85, 129
HphI GGTGA 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 49, 197
HpyCH4III ACNGT 2 cut(s) 160, 175
HpyCH4IV ACGT 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 44
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 1 cut(s) 212
Kpn2I TCCGGA 1 cut(s) 128
LguI GCTCTTC 1 cut(s) 80
LpnPI CCDG 5 cut(s) 98, 107, 142, 179, 206
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 144, 160
MboII GAAGA 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 2 cut(s) 228, 244
MnlI CCTC 4 cut(s) 32, 53, 58, 77
MroI TCCGGA 1 cut(s) 128
MseI TTAA 1 cut(s) 247
MspI CCGG 2 cut(s) 85, 129
MspR9I CCNGG 2 cut(s) 85, 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 14, 44
NciI CCSGG 1 cut(s) 85
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 144, 160
NspI RCATGY 1 cut(s) 212
NspV TTCGAA 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 2 cut(s) 107, 125
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 199
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 247
SatI GCNGC 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 85, 194
SduI GDGCHC 1 cut(s) 200
SetI ASST 3 cut(s) 24, 75, 83
SfuI TTCGAA 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 228, 244
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 83, 192
TaaI ACNGT 2 cut(s) 160, 175
TaiI ACGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 110
TasI AATT 2 cut(s) 228, 244
TfiI GAWTC 2 cut(s) 107, 125
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TseFI GTSAC 2 cut(s) 144, 160
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 144, 160
XceI RCATGY 1 cut(s) 212
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.