FvH4_6g42671

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003991
Physical Location & Seq
Forward (+)
33204275 .. 33208473
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42671.t3

Sequence Viewer

Length: 498 bp
ATGACGGCTGCGGATGCGACGTCGGGCGCCGCCACGACGTCGTCTTCGCCGTCAACGGTAGCGATCCCGGCCAACCTCGCTCTCGTCTCCGCTTTCCTCGCCTGCGCCGTCGCTCAGTTCCTCAAGCTCTTCACTTCCTGGTATAAAGATGGGAGATGGGATTCGAAACGAATGCTGGATTCCGGCGGAATGCCGTCGTCGCATTCGGCTTTGGTGACGGCGCTGACTGTGGCCGTTGGGCTGGACCAGGGCACCGGGGGAGCGGCTTTTGCTCTTGCCCTGGTCTTAGCGTTGATTGTAATGTATGATGCCACAGGAGTGAGACTTCATGCCGGTCGCCAAGCCGAATTGCTGAACCAAATTTTGTGTGAGCTTCCTCCGGAGCATCCTTTATCCACTGTTAGACCCTTGCGTGATTCGCTTGGACATACTCCAGTACAGGTTGTTGCTGGTGCTATTTTGGGATGCGTAGTAGCATTTCTAATGAGGGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

166

Amino Acids

16.99

Weight (kDa)

6.89

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 25 - 149 6.6e-45 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 23, 41
AccB1I GGYRCC 2 cut(s) 26, 251
AccBSI CCGCTC 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 5 cut(s) 11, 30, 90, 186, 263
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 2 cut(s) 69, 231
AcsI RAATTY 1 cut(s) 360
AcyI GRCGYC 3 cut(s) 20, 27, 38
AfaI GTAC 1 cut(s) 438
AjnI CCWGG 3 cut(s) 137, 246, 279
AleI CACNNNNGTG 1 cut(s) 317
AluBI AGCT 2 cut(s) 127, 373
AluI AGCT 2 cut(s) 127, 373
Alw26I GTCTC 2 cut(s) 91, 316
AlwI GGATC 1 cut(s) 58
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 2 cut(s) 69, 231
ApeKI GCWGC 2 cut(s) 8, 491
ApoI RAATTY 1 cut(s) 360
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspLEI GCGC 3 cut(s) 29, 107, 223
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 2 cut(s) 68, 256
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 254
BanI GGYRCC 2 cut(s) 26, 251
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 478
BccI CCATC 2 cut(s) 143, 150
BceAI ACGGC 6 cut(s) 21, 34, 92, 178, 218, 234
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 3 cut(s) 139, 248, 281
BcnI CCSGG 2 cut(s) 68, 256
BcoDI GTCTC 2 cut(s) 91, 316
BfoI RGCGCY 2 cut(s) 30, 224
BisI GCNGC 4 cut(s) 9, 30, 264, 492
BlsI GCNGC 4 cut(s) 10, 31, 265, 493
Bme1390I CCNGG 5 cut(s) 68, 139, 248, 256, 281
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 28, 253
BmrFI CCNGG 5 cut(s) 68, 139, 248, 256, 281
BmsI GCATC 4 cut(s) 4, 298, 394, 455
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 68, 256
BsaHI GRCGYC 3 cut(s) 20, 27, 38
BsaJI CCNNGG 3 cut(s) 247, 255, 279
BsaWI WCCGGW 1 cut(s) 379
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 434
BseAI TCCGGA 1 cut(s) 379
BseBI CCWGG 3 cut(s) 139, 248, 281
BseDI CCNNGG 3 cut(s) 247, 255, 279
BseGI GGATG 3 cut(s) 19, 385, 470
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 1 cut(s) 478
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 71, 233
BshNI GGYRCC 2 cut(s) 26, 251
BsiEI CGRYCG 1 cut(s) 337
BsiSI CCGG 5 cut(s) 68, 183, 255, 333, 380
BsmAI GTCTC 2 cut(s) 91, 316
BsmBI CGTCTC 1 cut(s) 91
BsmI GAATGC 3 cut(s) 177, 195, 202
BsnI GGCC 2 cut(s) 71, 233
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 254
Bsp13I TCCGGA 1 cut(s) 379
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 5 cut(s) 11, 30, 90, 186, 263
BspANI GGCC 2 cut(s) 71, 233
BspCNI CTCAG 1 cut(s) 127
BspEI TCCGGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 28, 253
BspPI GGATC 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 164
BspT107I GGYRCC 2 cut(s) 26, 251
BsrBI CCGCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 3 cut(s) 247, 255, 279
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 3 cut(s) 20, 27, 38
Bst2UI CCWGG 3 cut(s) 139, 248, 281
Bst4CI ACNGT 3 cut(s) 58, 229, 400
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 3 cut(s) 20, 27, 38
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 114, 286
BstF5I GGATG 3 cut(s) 19, 385, 470
BstH2I RGCGCY 2 cut(s) 30, 224
BstHHI GCGC 3 cut(s) 29, 107, 223
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 2 cut(s) 91, 316
BstMBI GATC 1 cut(s) 63
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 7 cut(s) 14, 68, 77, 98, 199, 269, 418
BstNI CCWGG 3 cut(s) 139, 248, 281
BstSCI CCNGG 5 cut(s) 66, 137, 246, 254, 279
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 71, 233
BtsCI GGATG 3 cut(s) 19, 385, 470
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 3 cut(s) 29, 107, 223
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 437
CviAII CATG 1 cut(s) 329
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 2 cut(s) 114, 286
DinI GGCGCC 1 cut(s) 28
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 69, 231
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 244
EcoRII CCWGG 3 cut(s) 137, 246, 279
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 1 cut(s) 332
FaiI YATR 5 cut(s) 144, 306, 330, 429, 496
FatI CATG 1 cut(s) 328
Fnu4HI GCNGC 4 cut(s) 9, 30, 264, 492
FokI GGATG 3 cut(s) 26, 372, 477
Fsp4HI GCNGC 4 cut(s) 9, 30, 264, 492
GlaI GCGC 3 cut(s) 28, 106, 222
GluI GCNGC 4 cut(s) 9, 30, 264, 492
GsuI CTGGAG 1 cut(s) 417
HaeII RGCGCY 2 cut(s) 30, 224
HaeIII GGCC 2 cut(s) 71, 233
HapII CCGG 5 cut(s) 68, 183, 255, 333, 380
HhaI GCGC 3 cut(s) 29, 107, 223
Hin1I GRCGYC 3 cut(s) 20, 27, 38
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 3 cut(s) 27, 105, 221
HinP1I GCGC 3 cut(s) 27, 105, 221
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 3 cut(s) 161, 179, 416
HpaII CCGG 5 cut(s) 68, 183, 255, 333, 380
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 7 cut(s) 22, 25, 40, 43, 113, 199, 202
HpyCH4III ACNGT 3 cut(s) 58, 229, 400
HpyCH4IV ACGT 2 cut(s) 20, 38
HpyCH4V TGCA 1 cut(s) 494
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 68, 77, 98, 199, 269, 418
HpyF3I CTNAG 2 cut(s) 114, 286
HpySE526I ACGT 2 cut(s) 20, 38
Hsp92I GRCGYC 3 cut(s) 20, 27, 38
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 3 cut(s) 27, 105, 221
KasI GGCGCC 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 379
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 2 cut(s) 260, 382
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 4 cut(s) 4, 298, 394, 455
MaeII ACGT 2 cut(s) 20, 38
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 65
MbiI CCGCTC 1 cut(s) 263
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 36, 121
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 2 cut(s) 347, 360
Mly113I GGCGCC 1 cut(s) 27
MnlI CCTC 5 cut(s) 86, 107, 131, 387, 480
MroI TCCGGA 1 cut(s) 379
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 5 cut(s) 68, 183, 255, 333, 380
MspR9I CCNGG 5 cut(s) 68, 139, 248, 256, 281
Mva1269I GAATGC 3 cut(s) 177, 195, 202
MvaI CCWGG 3 cut(s) 139, 248, 281
MwoI GCNNNNNNNGC 7 cut(s) 14, 68, 77, 98, 199, 269, 418
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 2 cut(s) 68, 256
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 2 cut(s) 28, 253
NmuCI GTSAC 1 cut(s) 214
NspV TTCGAA 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 134
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 105
PctI GAATGC 3 cut(s) 177, 195, 202
PfeI GAWTC 3 cut(s) 161, 179, 416
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 4 cut(s) 10, 31, 265, 493
PluTI GGCGCC 1 cut(s) 30
Psp6I CCWGG 3 cut(s) 137, 246, 279
PspGI CCWGG 3 cut(s) 137, 246, 279
PspN4I GGNNCC 2 cut(s) 28, 253
PspPI GGNCC 1 cut(s) 244
PsyI GACNNNGTC 1 cut(s) 40
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 134
SatI GCNGC 4 cut(s) 9, 30, 264, 492
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 5 cut(s) 68, 139, 248, 256, 281
SduI GDGCHC 1 cut(s) 254
SetI ASST 6 cut(s) 23, 41, 78, 129, 375, 444
SfaNI GCATC 4 cut(s) 4, 298, 394, 455
SfoI GGCGCC 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 347, 360
SsiI CCGC 5 cut(s) 11, 30, 90, 186, 263
SspDI GGCGCC 1 cut(s) 26
StyD4I CCNGG 5 cut(s) 66, 137, 246, 254, 279
TaaI ACNGT 3 cut(s) 58, 229, 400
TaiI ACGT 2 cut(s) 23, 41
TaqI TCGA 1 cut(s) 164
TasI AATT 2 cut(s) 347, 360
TatI WGTACW 1 cut(s) 436
TauI GCSGC 2 cut(s) 32, 266
TfiI GAWTC 3 cut(s) 161, 179, 416
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 8, 491
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 360
ZraI GACGTC 2 cut(s) 21, 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.