Rh5CG312300

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003991
Physical Location & Seq
Reverse (-)
34423771 .. 34426719
2949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG312300.1

Sequence Viewer

Length: 492 bp
ATGGACGAGGTGATCACAGCTGCTGATGCTTCCATCAATGGATCCAAGTCCTCCATCATTCCATACAACCTCCCTCTCCTCTCCGCCTTCCTCTCTTGCGCTCTCGCCCAGTTCCTCAAGCTTTTCACCACCTGGTACAAGGAGAAAAGATGGGACTCTAGAAGGATGCTTAGCTCTGGAGGAATGCCGTCGTCGCATTCGTCCACTGTGACAGCACTTGCAGTTGCTATTGGTTTCCAGGACGGAACCGGAGGGTCGACATTTGCCATTGCAGTGGTCTTGGCATGTGTTGTCATGTATGATGCTACTGGTATAAGACTCCATGCTGGTCGTCAAGCTGAATTATTAAATCAAATAGTGTGTGAGCTACCTCCAGAACACCCGGTTTCTAGTGTTAGACCTCTACGGGATTCACTTGGTCATACTCCATTGCAGGTTCTTGCAGGTGCAGTGTTGGGATGTATAGTGGCATACCTTATGTGTTCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

163

Amino Acids

17.3

Weight (kDa)

6.88

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 23 - 156 4.8e-50 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
Acc36I ACCTGC 2 cut(s) 424, 434
AccI GTMKAC 1 cut(s) 257
AciI CCGC 1 cut(s) 84
AclWI GGATC 2 cut(s) 36, 49
AfaI GTAC 1 cut(s) 137
AjnI CCWGG 2 cut(s) 131, 237
AluBI AGCT 5 cut(s) 20, 121, 174, 338, 367
AluI AGCT 5 cut(s) 20, 121, 174, 338, 367
AlwI GGATC 2 cut(s) 36, 49
AlwNI CAGNNNCTG 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 22, 118
BamHI GGATCC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 7
BccI CCATC 3 cut(s) 41, 62, 144
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 133, 239
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 383
BfaI CTAG 2 cut(s) 159, 390
BfuAI ACCTGC 2 cut(s) 424, 434
BisI GCNGC 1 cut(s) 21
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 3 cut(s) 133, 239, 383
BmiI GGNNCC 2 cut(s) 43, 247
BmrFI CCNGG 3 cut(s) 133, 239, 383
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 3 cut(s) 16, 156, 292
BmuI ACTGGG 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 198, 357
Bpu1102I GCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 109, 313
Bse3DI GCAATG 2 cut(s) 267, 428
BseBI CCWGG 2 cut(s) 133, 239
BseGI GGATG 2 cut(s) 171, 464
BseMI GCAATG 2 cut(s) 267, 428
BseNI ACTGG 2 cut(s) 109, 313
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 468
BsiSI CCGG 2 cut(s) 249, 383
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 189, 196
Bsp143I GATC 2 cut(s) 12, 41
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 43, 247
BspMI ACCTGC 2 cut(s) 424, 434
BspPI GGATC 2 cut(s) 36, 49
BsrDI GCAATG 2 cut(s) 267, 428
BsrI ACTGG 2 cut(s) 109, 313
BssMI GATC 2 cut(s) 12, 41
Bst2UI CCWGG 2 cut(s) 133, 239
Bst4CI ACNGT 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 171, 464
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 15, 44
BstMBI GATC 2 cut(s) 12, 41
BstMWI GCNNNNNNNGC 2 cut(s) 26, 193
BstNI CCWGG 2 cut(s) 133, 239
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 131, 237, 381
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 41
BtsCI GGATG 2 cut(s) 171, 464
BtsI GCAGTG 2 cut(s) 279, 456
BtsIMutI CAGTG 3 cut(s) 204, 279, 456
BveI ACCTGC 2 cut(s) 424, 434
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 1 cut(s) 101
CsiI ACCWGGT 1 cut(s) 131
Csp6I GTAC 1 cut(s) 136
CviAII CATG 3 cut(s) 285, 295, 323
CviJI RGCY 5 cut(s) 20, 121, 174, 338, 367
CviKI_1 RGCY 5 cut(s) 20, 121, 174, 338, 367
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 170
DpnI GATC 2 cut(s) 14, 43
DpnII GATC 2 cut(s) 12, 41
EciI GGCGGA 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 131, 237
FaeI CATG 3 cut(s) 288, 298, 326
FaqI GGGAC 1 cut(s) 167
FatI CATG 3 cut(s) 284, 294, 322
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 178, 471
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 159, 390
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 2 cut(s) 198, 357
HapII CCGG 2 cut(s) 249, 383
HhaI GCGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 288, 298, 326
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 3 cut(s) 155, 318, 410
HpaII CCGG 2 cut(s) 249, 383
HphI GGTGA 2 cut(s) 22, 118
Hpy166II GTNNAC 2 cut(s) 204, 258
Hpy188III TCNNGA 3 cut(s) 159, 177, 374
Hpy8I GTNNAC 2 cut(s) 204, 258
Hpy99I CGWCG 2 cut(s) 193, 196
HpyAV CCTTC 2 cut(s) 97, 156
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 5 cut(s) 221, 272, 433, 443, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 193
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 3 cut(s) 288, 298, 326
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 2 cut(s) 12, 41
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 3 cut(s) 16, 156, 292
MabI ACCWGGT 1 cut(s) 131
MaeI CTAG 2 cut(s) 159, 390
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 14, 43
MboI GATC 2 cut(s) 12, 41
MflI RGATCY 1 cut(s) 41
MluCI AATT 1 cut(s) 341
MlyI GAGTC 2 cut(s) 149, 312
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 249, 383
MspR9I CCNGG 3 cut(s) 133, 239, 383
Mva1269I GAATGC 2 cut(s) 189, 196
MvaI CCWGG 2 cut(s) 133, 239
MwoI GCNNNNNNNGC 2 cut(s) 26, 193
NciI CCSGG 1 cut(s) 383
NdeII GATC 2 cut(s) 12, 41
NlaIII CATG 3 cut(s) 288, 298, 326
NlaIV GGNNCC 2 cut(s) 43, 247
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 288
PaqCI CACCTGC 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 2 cut(s) 189, 196
PfeI GAWTC 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 2 cut(s) 149, 312
PpsI GAGTC 2 cut(s) 149, 312
Psp6I CCWGG 2 cut(s) 131, 237
PspGI CCWGG 2 cut(s) 131, 237
PspN4I GGNNCC 2 cut(s) 43, 247
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 272
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 12, 41
SchI GAGTC 2 cut(s) 149, 312
ScrFI CCNGG 3 cut(s) 133, 239, 383
SexAI ACCWGGT 1 cut(s) 131
SfaNI GCATC 3 cut(s) 16, 156, 292
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 341
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 159, 390
StyD4I CCNGG 3 cut(s) 131, 237, 381
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 257, 485
TasI AATT 1 cut(s) 341
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 3 cut(s) 211, 279, 456
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 208
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 3 cut(s) 211, 279, 456
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 159, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.