Prupe.4G220600_v2.0.a1

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0003991
Physical Location & Seq
Reverse (-)
13852982 .. 13856922
3941 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G220600.1

Sequence Viewer

Length: 504 bp
ATGGACGAGGTGATCACGGCCGCTGATGCCTCATCGAATGGATCTACATCATCACAGACCTCCATCATTCCCTCTAATCTCCCTCTCCTCTCTGCCTTCCTCTCCTTCGCTCTCGCTCAGTTTCTCAAGCTCTTCACCACCTGGTACAAAGAGAAAAGATGGGACTCTAGAAGGATGCTTGGGTCAGGAGGAATGCCCTCATCGCATTCAGCTACTGTGACAGCTCTGGCAGTTGCTATTGGTTTCCAGGAAGGAACTGGAGGATCGGCCTTTGCCATTGCAGTGGTTTTGGCATGTGTTGTCATGTATGATGCTACTGGTGTAAGACTCCATGCTGGTCGTCAAGCTGAATTATTAAATCAAATAGTATGTGAGCTACCTCCAGAACACCCAGTTTCTAGTGTTAGACCTCTACGCGATTCACTTGGTCATACTCCATTGCAGGTTCTTGCAGGTGCAATGTTGGGATGTATAGTAGCTTCCCTCATGAGAAGTTCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

168

Amino Acids

17.55

Weight (kDa)

6.89

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 443
Acc36I ACCTGC 2 cut(s) 433, 443
AccII CGCG 1 cut(s) 417
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 49, 271
AcoI YGGCCR 1 cut(s) 18
AfaI GTAC 1 cut(s) 146
AjnI CCWGG 2 cut(s) 140, 246
AluBI AGCT 6 cut(s) 130, 212, 224, 347, 376, 479
AluI AGCT 6 cut(s) 130, 212, 224, 347, 376, 479
AlwI GGATC 2 cut(s) 49, 271
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 2 cut(s) 18, 267
AsuHPI GGTGA 2 cut(s) 22, 127
BarI GAAGNNNNNNTAC 2 cut(s) 463, 495
BccI CCATC 2 cut(s) 71, 153
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 142, 248
BclI TGATCA 1 cut(s) 12
BfaI CTAG 2 cut(s) 168, 399
BfuAI ACCTGC 2 cut(s) 433, 443
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 142, 248
BmrFI CCNGG 2 cut(s) 142, 248
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 3 cut(s) 16, 165, 301
BmuI ACTGGG 1 cut(s) 386
BpmI CTGGAG 2 cut(s) 279, 366
BpuEI CTTGAG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 46
Bse1I ACTGG 4 cut(s) 262, 322, 392, 498
Bse3DI GCAATG 3 cut(s) 276, 437, 465
Bse8I GATNNNNATC 1 cut(s) 46
BseBI CCWGG 2 cut(s) 142, 248
BseGI GGATG 2 cut(s) 180, 473
BseJI GATNNNNATC 1 cut(s) 46
BseMI GCAATG 3 cut(s) 276, 437, 465
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 4 cut(s) 262, 322, 392, 498
BseRI GAGGAG 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 20, 269
BsiEI CGRYCG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 2 cut(s) 198, 205
BsnI GGCC 2 cut(s) 20, 269
Bsp143I GATC 3 cut(s) 12, 41, 263
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 20, 269
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 486
BspMI ACCTGC 2 cut(s) 433, 443
BspPI GGATC 2 cut(s) 49, 271
BspQI GCTCTTC 1 cut(s) 137
BsrDI GCAATG 3 cut(s) 276, 437, 465
BsrI ACTGG 4 cut(s) 262, 322, 392, 498
BssMI GATC 3 cut(s) 12, 41, 263
Bst2UI CCWGG 2 cut(s) 142, 248
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 180, 473
BstFNI CGCG 1 cut(s) 417
BstKTI GATC 3 cut(s) 15, 44, 266
BstMBI GATC 3 cut(s) 12, 41, 263
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 26, 202
BstNI CCWGG 2 cut(s) 142, 248
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 140, 246
BstUI CGCG 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 1 cut(s) 41
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 20, 269
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 180, 473
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
BveI ACCTGC 2 cut(s) 433, 443
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 486
CsiI ACCWGGT 1 cut(s) 140
Csp6I GTAC 1 cut(s) 145
CviAII CATG 4 cut(s) 294, 304, 332, 487
CviJI RGCY 8 cut(s) 20, 130, 212, 224, 269, 347, 376, 479
CviKI_1 RGCY 8 cut(s) 20, 130, 212, 224, 269, 347, 376, 479
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 14, 43, 265
DpnII GATC 3 cut(s) 12, 41, 263
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EclXI CGGCCG 1 cut(s) 18
Eco52I CGGCCG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 140, 246
FaeI CATG 4 cut(s) 297, 307, 335, 490
FaiI YATR 8 cut(s) 295, 305, 309, 333, 370, 432, 473, 488
FaqI GGGAC 1 cut(s) 176
FatI CATG 4 cut(s) 293, 303, 331, 486
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 2 cut(s) 187, 480
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 168, 399
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 2 cut(s) 279, 366
HaeIII GGCC 2 cut(s) 20, 269
Hin1II CATG 4 cut(s) 297, 307, 335, 490
HinfI GANTC 3 cut(s) 164, 327, 419
HphI GGTGA 2 cut(s) 22, 127
Hpy188III TCNNGA 4 cut(s) 168, 186, 383, 487
HpyAV CCTTC 4 cut(s) 106, 115, 165, 245
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 4 cut(s) 281, 442, 452, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 202
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 4 cut(s) 297, 307, 335, 490
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 3 cut(s) 12, 41, 263
LguI GCTCTTC 1 cut(s) 137
LweI GCATC 3 cut(s) 16, 165, 301
MabI ACCWGGT 1 cut(s) 140
MaeI CTAG 2 cut(s) 168, 399
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 14, 43, 265
MboI GATC 3 cut(s) 12, 41, 263
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 41
MluCI AATT 1 cut(s) 350
MlyI GAGTC 2 cut(s) 158, 321
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 142, 248
Mva1269I GAATGC 2 cut(s) 198, 205
MvaI CCWGG 2 cut(s) 142, 248
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 26, 202
NdeII GATC 3 cut(s) 12, 41, 263
NlaIII CATG 4 cut(s) 297, 307, 335, 490
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 297
PagI TCATGA 1 cut(s) 486
PaqCI CACCTGC 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 137
PctI GAATGC 2 cut(s) 198, 205
PfeI GAWTC 1 cut(s) 419
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 2 cut(s) 158, 321
PpsI GAGTC 2 cut(s) 158, 321
Psp6I CCWGG 2 cut(s) 140, 246
PspGI CCWGG 2 cut(s) 140, 246
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 12, 41, 263
SchI GAGTC 2 cut(s) 158, 321
ScrFI CCNGG 2 cut(s) 142, 248
SexAI ACCWGGT 1 cut(s) 140
SfaNI GCATC 3 cut(s) 16, 165, 301
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 350
SsiI CCGC 1 cut(s) 21
SspMI CTAG 2 cut(s) 168, 399
StyD4I CCNGG 2 cut(s) 140, 246
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 35
TasI AATT 1 cut(s) 350
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspRI CASTG 1 cut(s) 288
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 297
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XspI CTAG 2 cut(s) 168, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.