RLG00000021098

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003991
Physical Location & Seq
Forward (+)
71939357 .. 71940835
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021098

Sequence Viewer

Length: 501 bp
ATGGACGAGGTGATGACGGCTGCCGATGCGACTTCCGGCAGGGCCACGACGTCGTCACCGGCATGGATCCCGGCCAACCCCGCTCTCATCTCCGCCTTCCTCGCCTGCGCCGTCGCTCAGTTCCTCAAGCTGTTCACGTCCTGGTATAAAGATAGGAGATGGGATTCGAAACGAATGCTGGATTCTGGAGGAATGCCGTCGTCGCATTCGGCGACGGTGACGGCGCTGACGGTGGCCGTTGGGCTGGACCACGGCACCGGAGGATCTGCTTTTGCTCTTGCCCTGGTCTTAGCGTTAATTGTGATGTATGATGCCACAGGAGTGAGACTTCATGCTGGTCGCCAAGCCGAATTGCTGAACCAAATTGTGTGTGAGCTTCCTCCGGAGCATCCTTTGTCTGCTGTTAGACCCTTACGTGATTCGCTTGGACATACTCCAGTACAGGTTGTTGCTGGTGCTATTTTGGGATGCATAGTAGCATATCTAATGAGGGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

167

Amino Acids

17.46

Weight (kDa)

6.95

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 26 - 159 1e-50 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 2 cut(s) 81, 93
AclWI GGATC 3 cut(s) 61, 74, 271
AcoI YGGCCR 2 cut(s) 72, 234
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 441
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 2 cut(s) 140, 282
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 2 cut(s) 130, 376
AluI AGCT 2 cut(s) 130, 376
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 3 cut(s) 61, 74, 271
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 3 cut(s) 42, 72, 234
ApeKI GCWGC 2 cut(s) 20, 494
AspLEI GCGC 2 cut(s) 110, 226
AspS9I GGNCC 2 cut(s) 42, 247
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 22, 48, 229
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 247
BamHI GGATCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 7, 481
BccI CCATC 1 cut(s) 153
BceAI ACGGC 6 cut(s) 33, 95, 181, 221, 237, 268
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 2 cut(s) 142, 284
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 2 cut(s) 21, 495
BlsI GCNGC 2 cut(s) 22, 496
Bme1390I CCNGG 3 cut(s) 71, 142, 284
Bme18I GGWCC 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 42, 247
BmiI GGNNCC 2 cut(s) 68, 256
BmrFI CCNGG 3 cut(s) 71, 142, 284
BmsI GCATC 4 cut(s) 16, 301, 397, 458
BpmI CTGGAG 2 cut(s) 207, 420
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 250, 282
BsaWI WCCGGW 2 cut(s) 257, 382
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 2 cut(s) 142, 284
BseDI CCNNGG 2 cut(s) 250, 282
BseGI GGATG 2 cut(s) 388, 473
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 7, 481
BshFI GGCC 3 cut(s) 44, 74, 236
BshNI GGYRCC 1 cut(s) 254
BsiSI CCGG 5 cut(s) 36, 59, 71, 258, 383
BsmAI GTCTC 1 cut(s) 319
BsmI GAATGC 3 cut(s) 180, 198, 205
BsnI GGCC 3 cut(s) 44, 74, 236
Bsp119I TTCGAA 1 cut(s) 167
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 2 cut(s) 66, 263
BspACI CCGC 2 cut(s) 81, 93
BspANI GGCC 3 cut(s) 44, 74, 236
BspCNI CTCAG 1 cut(s) 130
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 68, 256
BspPI GGATC 3 cut(s) 61, 74, 271
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 254
BsrBI CCGCTC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 250, 282
BssMI GATC 2 cut(s) 66, 263
BssNI GRCGYC 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 142, 284
Bst4CI ACNGT 2 cut(s) 217, 232
BstACI GRCGYC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 416
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 117, 289, 498
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 388, 473
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 2 cut(s) 110, 226
BstKTI GATC 2 cut(s) 69, 266
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 66, 263
BstMWI GCNNNNNNNGC 4 cut(s) 26, 80, 101, 202
BstNI CCWGG 2 cut(s) 142, 284
BstSCI CCNGG 3 cut(s) 69, 140, 282
BstV1I GCAGC 2 cut(s) 7, 481
BstX2I RGATCY 2 cut(s) 66, 263
BstYI RGATCY 2 cut(s) 66, 263
BsuRI GGCC 3 cut(s) 44, 74, 236
BtgI CCRYGG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 388, 473
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 2 cut(s) 110, 226
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 42, 247
Csp6I GTAC 1 cut(s) 440
CviAII CATG 2 cut(s) 63, 332
CviJI RGCY 9 cut(s) 20, 44, 74, 130, 236, 244, 347, 376, 494
CviKI_1 RGCY 9 cut(s) 20, 44, 74, 130, 236, 244, 347, 376, 494
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 3 cut(s) 117, 289, 498
DpnI GATC 2 cut(s) 68, 265
DpnII GATC 2 cut(s) 66, 263
EaeI YGGCCR 2 cut(s) 72, 234
EciI GGCGGA 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 140, 282
EcoT22I ATGCAT 1 cut(s) 473
FaeI CATG 2 cut(s) 66, 335
FaiI YATR 7 cut(s) 64, 147, 309, 333, 432, 473, 481
FatI CATG 2 cut(s) 62, 331
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 21, 495
FokI GGATG 2 cut(s) 375, 480
Fsp4HI GCNGC 2 cut(s) 21, 495
GlaI GCGC 2 cut(s) 109, 225
GluI GCNGC 2 cut(s) 21, 495
GsuI CTGGAG 2 cut(s) 207, 420
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 3 cut(s) 44, 74, 236
HapII CCGG 5 cut(s) 36, 59, 71, 258, 383
HhaI GCGC 2 cut(s) 110, 226
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 66, 335
Hin6I GCGC 2 cut(s) 108, 224
HinP1I GCGC 2 cut(s) 108, 224
HinfI GANTC 3 cut(s) 164, 182, 419
HpaII CCGG 5 cut(s) 36, 59, 71, 258, 383
HphI GGTGA 3 cut(s) 22, 48, 229
Hpy166II GTNNAC 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 186, 383
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 6 cut(s) 52, 55, 116, 202, 205, 217
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 217, 232
HpyCH4IV ACGT 3 cut(s) 50, 137, 415
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 80, 101, 202
HpyF3I CTNAG 3 cut(s) 117, 289, 498
HpySE526I ACGT 3 cut(s) 50, 137, 415
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 66, 335
HspAI GCGC 2 cut(s) 108, 224
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 2 cut(s) 66, 263
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 2 cut(s) 7, 481
LweI GCATC 4 cut(s) 16, 301, 397, 458
MaeII ACGT 3 cut(s) 50, 137, 415
MaeIII GTNAC 2 cut(s) 54, 217
MalI GATC 2 cut(s) 68, 265
MbiI CCGCTC 1 cut(s) 83
MboI GATC 2 cut(s) 66, 263
MflI RGATCY 2 cut(s) 66, 263
MluCI AATT 3 cut(s) 297, 350, 363
MnlI CCTC 6 cut(s) 110, 134, 182, 254, 390, 483
Mph1103I ATGCAT 1 cut(s) 473
MroI TCCGGA 1 cut(s) 382
MseI TTAA 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 61, 320
MspI CCGG 5 cut(s) 36, 59, 71, 258, 383
MspR9I CCNGG 3 cut(s) 71, 142, 284
Mva1269I GAATGC 3 cut(s) 180, 198, 205
MvaI CCWGG 2 cut(s) 142, 284
MwoI GCNNNNNNNGC 4 cut(s) 26, 80, 101, 202
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 66, 263
NlaIII CATG 2 cut(s) 66, 335
NlaIV GGNNCC 2 cut(s) 68, 256
NmuCI GTSAC 2 cut(s) 54, 217
NsiI ATGCAT 1 cut(s) 473
NspV TTCGAA 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 320
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 209
PctI GAATGC 3 cut(s) 180, 198, 205
PfeI GAWTC 3 cut(s) 164, 182, 419
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 22, 496
Ppu21I YACGTR 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 140, 282
PspGI CCWGG 2 cut(s) 140, 282
PspN4I GGNNCC 2 cut(s) 68, 256
PspPI GGNCC 2 cut(s) 42, 247
PsuI RGATCY 2 cut(s) 66, 263
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
RseI CAYNNNNRTG 2 cut(s) 61, 320
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 2 cut(s) 21, 495
Sau3AI GATC 2 cut(s) 66, 263
Sau96I GGNCC 2 cut(s) 42, 247
ScrFI CCNGG 3 cut(s) 71, 142, 284
SetI ASST 7 cut(s) 12, 53, 132, 140, 378, 418, 447
SfaNI GCATC 4 cut(s) 16, 301, 397, 458
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 2 cut(s) 61, 320
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 297, 350, 363
SsiI CCGC 2 cut(s) 81, 93
StyD4I CCNGG 3 cut(s) 69, 140, 282
TaaI ACNGT 2 cut(s) 217, 232
TaiI ACGT 3 cut(s) 53, 140, 418
TaqI TCGA 1 cut(s) 167
TasI AATT 3 cut(s) 297, 350, 363
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 3 cut(s) 164, 182, 419
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseFI GTSAC 2 cut(s) 54, 217
TseI GCWGC 2 cut(s) 20, 494
Tsp45I GTSAC 2 cut(s) 54, 217
TspDTI ATGAA 1 cut(s) 320
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 247
ZraI GACGTC 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.