Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002715.1

Orthogroup ID

OG0003991

Physical Location & Seq

Genomic Coordinates Reverse (-)

73667 .. 74872

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002715.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggacgaggtgatcacagctgctgatgcttccatcaatggatccaagtcctccatcattccatacaacctccctctcctctccgccttcctctcttgcgctctcgcccagttcctcaagcttttcaccacctggtacaaagagaaaagatgggactctagaaggatgcttagctctggaggaatgccgtcgtcgcattcgtccactgtgacggcacttgcagttgctattggtttccaggacggaaccggagggtcgacatttgccattgcagtggttttggcatgtgttgtcatgtatgatgctactggtgtaagactccatgctggtcgtcaagctgaagtaagcttacatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF212

Protein Analysis

119

Amino Acids

12.69

Weight (kDa)

7.83

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21610 AT3G21610
fragaria_vesca	FvH4_3g23300 FvH4_6g42671 FvH4_6g42671 FvH4_6g42671
malus_domestica	MD03G1195400.v1.1 MD09G1071100.v1.1 MD11G1211900.v1.1
prunus_persica	Prupe.3G213500_v2.0.a1 Prupe.4G220600_v2.0.a1
pyrus_communis	pycom03g14770 pycom09g03490
rosa_chinensis	RchiOBHm_Chr2g0158581 RchiOBHm_Chr5g0041061
rosa_laevigata	RLG00000021098 RLG00000034022
rosa_multiflora	Rmu_sc0002715.1_g000019
rosa_roxburghii	Rroxscaffold_1G00039670 Rroxscaffold_2G00091190
rosa_rugosa	Rorug02G0470800.1 Rorug05G0189700 Rorug05G0189800
rosa_samantha	Rh2AG536400 Rh2BG549500 Rh2CG520100 Rh2DG559200 Rh5AG275300 Rh5BG280100 Rh5CG312300 Rh5DG288300
rosa_wichuraiana	Rw2G044400 Rw5G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	36, 49
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	131, 237
AluBI	AGCT	5 cut(s)	20, 121, 174, 338, 348
AluI	AGCT	5 cut(s)	20, 121, 174, 338, 348
AlwI	GGATC	2 cut(s)	36, 49
AlwNI	CAGNNNCTG	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	22, 118
BamHI	GGATCC	1 cut(s)	41
BarI	GAAGNNNNNNTAC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	3 cut(s)	41, 62, 144
BceAI	ACGGC	2 cut(s)	172, 228
BciT130I	CCWGG	2 cut(s)	133, 239
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	2 cut(s)	159, 358
BisI	GCNGC	1 cut(s)	21
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	133, 239
BmiI	GGNNCC	2 cut(s)	43, 247
BmrFI	CCNGG	2 cut(s)	133, 239
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	16, 156, 292
BmuI	ACTGGG	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	198
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	109, 313
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	133, 239
BseGI	GGATG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	109, 313
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	2 cut(s)	189, 196
Bsp143I	GATC	2 cut(s)	12, 41
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	43, 247
BspPI	GGATC	2 cut(s)	36, 49
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	109, 313
BssMI	GATC	2 cut(s)	12, 41
Bst2UI	CCWGG	2 cut(s)	133, 239
Bst4CI	ACNGT	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	2 cut(s)	15, 44
BstMBI	GATC	2 cut(s)	12, 41
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 193
BstNI	CCWGG	2 cut(s)	133, 239
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	131, 237
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	204, 279
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	3 cut(s)	285, 295, 323
CviJI	RGCY	5 cut(s)	20, 121, 174, 338, 348
CviKI_1	RGCY	5 cut(s)	20, 121, 174, 338, 348
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	14, 43
DpnII	GATC	2 cut(s)	12, 41
EciI	GGCGGA	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	131, 237
FaeI	CATG	3 cut(s)	288, 298, 326
FaiI	YATR	5 cut(s)	64, 286, 296, 300, 324
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	284, 294, 322
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	159, 358
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	198
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	288, 298, 326
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	2 cut(s)	119, 346
HinfI	GANTC	2 cut(s)	155, 318
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	22, 118
Hpy166II	GTNNAC	2 cut(s)	204, 258
Hpy188III	TCNNGA	2 cut(s)	159, 177
Hpy8I	GTNNAC	2 cut(s)	204, 258
Hpy99I	CGWCG	2 cut(s)	193, 196
HpyAV	CCTTC	2 cut(s)	97, 156
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	221, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 193
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	288, 298, 326
HspAI	GCGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 41
LpnPI	CCDG	9 cut(s)	118, 122, 145, 162, 224, 251, 262, 294, 312
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	3 cut(s)	16, 156, 292
MabI	ACCWGGT	1 cut(s)	131
MaeI	CTAG	2 cut(s)	159, 358
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	14, 43
MboI	GATC	2 cut(s)	12, 41
MflI	RGATCY	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	149, 312
MnlI	CCTC	8 cut(s)	61, 80, 84, 89, 101, 125, 173, 245
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	133, 239
Mva1269I	GAATGC	2 cut(s)	189, 196
MvaI	CCWGG	2 cut(s)	133, 239
MwoI	GCNNNNNNNGC	2 cut(s)	26, 193
NdeII	GATC	2 cut(s)	12, 41
NlaIII	CATG	3 cut(s)	288, 298, 326
NlaIV	GGNNCC	2 cut(s)	43, 247
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	2 cut(s)	189, 196
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	2 cut(s)	149, 312
PpsI	GAGTC	2 cut(s)	149, 312
Psp6I	CCWGG	2 cut(s)	131, 237
PspGI	CCWGG	2 cut(s)	131, 237
PspN4I	GGNNCC	2 cut(s)	43, 247
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	272
SalI	GTCGAC	1 cut(s)	256
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	12, 41
SchI	GAGTC	2 cut(s)	149, 312
ScrFI	CCNGG	2 cut(s)	133, 239
SetI	ASST	8 cut(s)	12, 22, 72, 123, 134, 176, 340, 350
SexAI	ACCWGGT	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	16, 156, 292
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	159, 358
StyD4I	CCNGG	2 cut(s)	131, 237
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	257
TscAI	CASTG	2 cut(s)	211, 279
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	211, 279
XbaI	TCTAGA	1 cut(s)	158
XceI	RCATGY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	2 cut(s)	159, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.