RLG00000034022

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003991
Physical Location & Seq
Reverse (-)
35458285 .. 35460253
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034022

Sequence Viewer

Length: 477 bp
ATGAGATACGCAAAAAGAAAAAAAGTCAGACAGAGTCTGAAAACAATTGAGCAACGCTACCACGCGGTTTCATTACTTACCATCTCCGTCTCGTTTTTTCTGTCTCGGACGCAAATAATGGACGAGGTGATCACAGCTGCTGATGCTTCCATCAATGGATCCAAGTCCTCCATCATTCCATACAACCTCCCTCTCCTCTCCGCCTTCCTCTCTTGCGCTCTCGCCCAGTTCCTCAAGCTTTTCACCACCTGGTACAAAGAGAAAAGATGGGACTCTAGAAGGATGCTTAGCTCTGGAGGAATGCCCTCGTCGCATTCGTCCACTGTGACAGCACTTGCAGTTGCTATTGGTTTCCAGGACGGAACCGGAGGGTCGACATTTGCCATTGCAGTGGTTTTGGCATGTGTTGTCATGTATGATGCTACTGGTGTAAGACTCCATGCTGGTCGTCAAGCTGAAGTAAGATTACATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

159

Amino Acids

17.43

Weight (kDa)

10.07

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 62 - 154 4.5e-37 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 374
AccII CGCG 1 cut(s) 65
AciI CCGC 2 cut(s) 65, 201
AclWI GGATC 2 cut(s) 153, 166
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 1 cut(s) 254
AjnI CCWGG 2 cut(s) 248, 354
AluBI AGCT 4 cut(s) 137, 238, 291, 455
AluI AGCT 4 cut(s) 137, 238, 291, 455
Alw26I GTCTC 2 cut(s) 94, 108
AlwI GGATC 2 cut(s) 153, 166
AlwNI CAGNNNCTG 2 cut(s) 37, 140
ApeKI GCWGC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 139, 235
BamHI GGATCC 1 cut(s) 158
BarI GAAGNNNNNNTAC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 124
BccI CCATC 4 cut(s) 89, 158, 179, 261
BciT130I CCWGG 2 cut(s) 250, 356
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 94, 108
BfaI CTAG 2 cut(s) 276, 475
BisI GCNGC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 250, 356
BmiI GGNNCC 2 cut(s) 160, 364
BmrFI CCNGG 2 cut(s) 250, 356
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 3 cut(s) 133, 273, 409
BmuI ACTGGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 226, 430
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 2 cut(s) 250, 356
BseGI GGATG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 226, 430
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 94, 108
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 2 cut(s) 306, 313
Bsp143I GATC 2 cut(s) 129, 158
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 2 cut(s) 65, 201
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 160, 364
BspPI GGATC 2 cut(s) 153, 166
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 226, 430
BssMI GATC 2 cut(s) 129, 158
Bst2UI CCWGG 2 cut(s) 250, 356
Bst4CI ACNGT 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 2 cut(s) 132, 161
BstMAI GTCTC 2 cut(s) 94, 108
BstMBI GATC 2 cut(s) 129, 158
BstMWI GCNNNNNNNGC 2 cut(s) 143, 310
BstNI CCWGG 2 cut(s) 250, 356
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 248, 354
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 1 cut(s) 158
BtsCI GGATG 1 cut(s) 288
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 321, 396
CaiI CAGNNNCTG 2 cut(s) 37, 140
CfoI GCGC 1 cut(s) 218
CseI GACGC 1 cut(s) 118
CsiI ACCWGGT 1 cut(s) 248
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 402, 412, 440
CviJI RGCY 4 cut(s) 137, 238, 291, 455
CviKI_1 RGCY 4 cut(s) 137, 238, 291, 455
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 287
DpnI GATC 2 cut(s) 131, 160
DpnII GATC 2 cut(s) 129, 158
EciI GGCGGA 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 248, 354
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 3 cut(s) 405, 415, 443
FaiI YATR 5 cut(s) 181, 403, 413, 417, 441
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 401, 411, 439
FbaI TGATCA 1 cut(s) 129
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 2 cut(s) 276, 475
GlaI GCGC 1 cut(s) 217
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 315
HapII CCGG 1 cut(s) 366
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 405, 415, 443
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 3 cut(s) 34, 272, 435
HpaII CCGG 1 cut(s) 366
HphI GGTGA 2 cut(s) 139, 235
Hpy166II GTNNAC 2 cut(s) 321, 375
Hpy188I TCNGA 3 cut(s) 29, 39, 108
Hpy188III TCNNGA 2 cut(s) 276, 294
Hpy8I GTNNAC 2 cut(s) 321, 375
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 214, 273
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 2 cut(s) 338, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 310
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 3 cut(s) 405, 415, 443
HspAI GCGC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 129, 158
LpnPI CCDG 9 cut(s) 235, 239, 262, 279, 341, 368, 379, 411, 429
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 3 cut(s) 133, 273, 409
MabI ACCWGGT 1 cut(s) 248
MaeI CTAG 2 cut(s) 276, 475
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 131, 160
MboI GATC 2 cut(s) 129, 158
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 158
MluCI AATT 1 cut(s) 45
MlyI GAGTC 3 cut(s) 43, 266, 429
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 2 cut(s) 250, 356
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 2 cut(s) 306, 313
MvaI CCWGG 2 cut(s) 250, 356
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 143, 310
NdeII GATC 2 cut(s) 129, 158
NlaIII CATG 3 cut(s) 405, 415, 443
NlaIV GGNNCC 2 cut(s) 160, 364
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 2 cut(s) 306, 313
PflFI GACNNNGTC 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 3 cut(s) 42, 266, 429
PpsI GAGTC 3 cut(s) 42, 266, 429
Psp6I CCWGG 2 cut(s) 248, 354
PspGI CCWGG 2 cut(s) 248, 354
PspN4I GGNNCC 2 cut(s) 160, 364
PstNI CAGNNNCTG 2 cut(s) 37, 140
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 389
SalI GTCGAC 1 cut(s) 373
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 129, 158
SchI GAGTC 3 cut(s) 43, 266, 429
ScrFI CCNGG 2 cut(s) 250, 356
SetI ASST 7 cut(s) 129, 139, 189, 240, 251, 293, 457
SexAI ACCWGGT 1 cut(s) 248
SfaNI GCATC 3 cut(s) 133, 273, 409
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 45
SsiI CCGC 2 cut(s) 65, 201
SspMI CTAG 2 cut(s) 276, 475
StyD4I CCNGG 2 cut(s) 248, 354
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 374
TasI AATT 1 cut(s) 45
TscAI CASTG 2 cut(s) 328, 396
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 2 cut(s) 76, 375
TspRI CASTG 2 cut(s) 328, 396
Tth111I GACNNNGTC 1 cut(s) 33
XbaI TCTAGA 1 cut(s) 275
XceI RCATGY 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 374
XspI CTAG 2 cut(s) 276, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.