Rorug05G0189800

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003991
Physical Location & Seq
Forward (+)
18426196 .. 18427870
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0189800.1

Sequence Viewer

Length: 1359 bp
ATGATGAAGTTTGAGGTAATCAGAAGTGAAAACATTAAGCCATCTTCTCCAACCCCCCATTATCTCAAACACTTCAAGCTTTCCCTTTTAGACCAACTTGCTCCTGTTGCTTATGAGCCCTTGGTTCTCTTCTACCCCTGCAATGATCGTGACGTTACATTCACACCTGCAAAGAGATCCCTCTGGATGAAGAAGTCACTGTCTGAAACTCTGACTCGTTTCTACCCTTTTGCTGGAAGAATCAAAGAAAACATCTCAATCGAATGCTTCGATGATGGCGTTGACTATGTGGAAGCTCGTGTCCATGGCCTTCTCTCCACCCTTTTAGCACAACCTGATACCGAGGCACTGAGGCAGCTCCTTCCGGTAGAGATTGAGTCCCCGAAAGCAGGGACCGGGCCTCTGCTTCTTGTTCGGGAGAACTTTTTTGATTGTGGTGGATTGGCAATTGGTGTGTGCATGTCACGGAAGTTGGGTGATGCAGCCTCGCTGCGCACATTCATTATGTCATGGGCTGCTAGTGCTCTTGGATTTAGTCAAGCACTGCTTCCCGATTTCAACGCCTCATTTCGGTTCCCACCAATGGCAATTTCCTCTGCCCACAACTCTGCTGTGGATCATATCATCGAGAAGAGAACGAATGGTTGTGTCACAAAGAGGTTTGTGTTTTATGCATCAAAGATTGGCGCCCTTCAGACTAAAGCAGCCAGTGCAAATGTGAAACAGCCCACGATTTCGGAAGCTGTCACAGCTCTCATTTGGAGATGTGCAGTGGCTGCAGCCTCAAGATCAAGCTTACTGCACAAGTCTCCTCCTAAGCTCTCTGTGTTGTCCCAATCTGTGGATATTCGCAAAAGGGTCGTGCCCCCTTTGTCGGATGACTCTATAGGGAACCTTGTGGGATACTTTGCTGCACAGGCAAATGAGAGTGAGTTGGAGCTGCCAGGCTTGGTTGCTCAACTAAGGAAAGGGCTCAAAGAGGCGAGCAACTATTGTGCCGAAAGACTTAAAGGGAGTGATGGATCTCGGGTGATTATCGAATCTTTCAAAGAGTCAGATGATTTCATCCATAGAGATGACATTATGAATTTTCATGTCTGCACAGGTTTGAGTGATTATAAGGTATTGTATGAGGTGAATTTTGGGTGGGGAAGGCCAATTTGGGTGAGTAATATTCCTAGTGGTTTAAACAGAAATGTAGCATCATTGGTGAGCACAAGAGAGGATGATGGAACAGAGGCTTGGGTGACTTTGAGTGAGGGAGACATGGCAACTTTTGAACAGAACCAGGAGCTTCTTGCATTTGCTGTGGTGAATCCAAGTGTCTTGGAACCCATTGCATTGAAGTCTGCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

452

Amino Acids

49.77

Weight (kDa)

6.48

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 432 9.3e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1119
AarI CACCTGC 1 cut(s) 175
Acc16I TGCGCA 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 686
AccB7I CCANNNNNTGG 1 cut(s) 841
AclWI GGATC 3 cut(s) 171, 624, 1030
AcsI RAATTY 2 cut(s) 1087, 1138
AcuI CTGAAG 1 cut(s) 677
AcyI GRCGYC 1 cut(s) 687
AfiI CCNNNNNNNGG 6 cut(s) 233, 389, 570, 583, 841, 874
AgsI TTSAA 5 cut(s) 76, 559, 1048, 1280, 1345
AjnI CCWGG 2 cut(s) 943, 1287
AjuI GAANNNNNNNTTGG 6 cut(s) 574, 606, 1144, 1176, 1225, 1257
AluBI AGCT 9 cut(s) 79, 296, 358, 743, 752, 795, 820, 940, 1294
AluI AGCT 9 cut(s) 79, 296, 358, 743, 752, 795, 820, 940, 1294
Alw21I GWGCWC 2 cut(s) 526, 1217
Alw26I GTCTC 2 cut(s) 813, 1257
AlwI GGATC 3 cut(s) 171, 624, 1030
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 1 cut(s) 1026
AoxI GGCC 3 cut(s) 307, 398, 1154
ApeKI GCWGC 9 cut(s) 355, 482, 490, 515, 704, 776, 779, 911, 940
ApoI RAATTY 2 cut(s) 1087, 1138
AspLEI GCGC 2 cut(s) 495, 689
AspS9I GGNCC 2 cut(s) 393, 398
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 7 cut(s) 488, 1042, 1147, 1177, 1222, 1258, 1324
AvaI CYCGRG 1 cut(s) 1026
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 867
BanI GGYRCC 1 cut(s) 686
BanII GRGCYC 2 cut(s) 120, 975
BauI CACGAG 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 526, 1217
BbvI GCAGC 9 cut(s) 367, 477, 494, 502, 716, 763, 791, 898, 927
BccI CCATC 4 cut(s) 49, 269, 1013, 1223
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BciT130I CCWGG 2 cut(s) 945, 1289
BciVI GTATCC 1 cut(s) 896
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 813, 1257
BfaI CTAG 2 cut(s) 519, 1179
BfmI CTRYAG 2 cut(s) 777, 885
BfoI RGCGCY 1 cut(s) 690
BfuAI ACCTGC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 896
BisI GCNGC 9 cut(s) 356, 483, 491, 516, 705, 777, 780, 912, 941
BlsI GCNGC 9 cut(s) 357, 484, 492, 517, 706, 778, 781, 913, 942
Bme1390I CCNGG 3 cut(s) 397, 945, 1289
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 1026
BmgT120I GGNCC 2 cut(s) 393, 398
BmiI GGNNCC 5 cut(s) 394, 575, 688, 893, 1332
BmrFI CCNGG 3 cut(s) 397, 945, 1289
BmsI GCATC 3 cut(s) 469, 683, 1211
Bpu10I CCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 769
BpuMI CCSGG 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 687
BsaJI CCNNGG 3 cut(s) 120, 304, 342
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 6 cut(s) 233, 389, 570, 583, 841, 874
Bse1I ACTGG 1 cut(s) 708
Bse3DI GCAATG 2 cut(s) 148, 1335
BseBI CCWGG 2 cut(s) 945, 1289
BseDI CCNNGG 3 cut(s) 120, 304, 342
BseGI GGATG 4 cut(s) 192, 883, 1065, 1231
BseLI CCNNNNNNNGG 6 cut(s) 233, 389, 570, 583, 841, 874
BseMI GCAATG 2 cut(s) 148, 1335
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 1 cut(s) 801
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 9 cut(s) 367, 477, 494, 502, 716, 763, 791, 898, 927
BsgI GTGCAG 4 cut(s) 785, 789, 897, 1084
BshFI GGCC 3 cut(s) 309, 400, 1156
BshNI GGYRCC 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 526, 1217
BsiHKCI CYCGRG 1 cut(s) 1026
BsiSI CCGG 2 cut(s) 365, 396
BslFI GGGAC 3 cut(s) 364, 406, 817
BslI CCNNNNNNNGG 6 cut(s) 233, 389, 570, 583, 841, 874
BsmAI GTCTC 2 cut(s) 813, 1257
BsmFI GGGAC 3 cut(s) 364, 406, 817
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 3 cut(s) 309, 400, 1156
BsoBI CYCGRG 1 cut(s) 1026
Bsp1286I GDGCHC 5 cut(s) 120, 526, 867, 975, 1217
Bsp143I GATC 5 cut(s) 145, 176, 616, 788, 1022
Bsp19I CCATGG 1 cut(s) 304
BspANI GGCC 3 cut(s) 309, 400, 1156
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 5 cut(s) 394, 575, 688, 893, 1332
BspMAI CTGCAG 1 cut(s) 781
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 171, 624, 1030
BspT107I GGYRCC 1 cut(s) 686
BsrDI GCAATG 2 cut(s) 148, 1335
BsrI ACTGG 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 120, 304, 342
BssMI GATC 5 cut(s) 145, 176, 616, 788, 1022
BssNI GRCGYC 1 cut(s) 687
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 120, 304
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 2 cut(s) 945, 1289
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 134, 626
BstACI GRCGYC 1 cut(s) 687
BstAPI GCANNNNNTGC 2 cut(s) 710, 776
BstC8I GCNNGC 1 cut(s) 985
BstDEI CTNAG 3 cut(s) 350, 816, 962
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 4 cut(s) 192, 883, 1065, 1231
BstH2I RGCGCY 1 cut(s) 690
BstHHI GCGC 2 cut(s) 495, 689
BstKTI GATC 5 cut(s) 148, 179, 619, 791, 1025
BstMAI GTCTC 2 cut(s) 813, 1257
BstMBI GATC 5 cut(s) 145, 176, 616, 788, 1022
BstMWI GCNNNNNNNGC 6 cut(s) 107, 521, 710, 749, 776, 917
BstNI CCWGG 2 cut(s) 945, 1289
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 395, 943, 1287
BstSFI CTRYAG 2 cut(s) 777, 885
BstSLI GKGCMC 1 cut(s) 867
BstV1I GCAGC 9 cut(s) 367, 477, 494, 502, 716, 763, 791, 898, 927
BstX2I RGATCY 2 cut(s) 176, 1022
BstYI RGATCY 2 cut(s) 176, 1022
BsuI GTATCC 1 cut(s) 896
BsuRI GGCC 3 cut(s) 309, 400, 1156
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 4 cut(s) 192, 883, 1065, 1231
BtsI GCAGTG 2 cut(s) 542, 777
BtsIMutI CAGTG 5 cut(s) 197, 347, 542, 715, 777
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 985
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 2 cut(s) 495, 689
Cfr13I GGNCC 2 cut(s) 393, 398
CviAII CATG 5 cut(s) 305, 460, 510, 1094, 1267
DdeI CTNAG 3 cut(s) 350, 816, 962
DinI GGCGCC 1 cut(s) 688
DpnI GATC 5 cut(s) 147, 178, 618, 790, 1024
DpnII GATC 5 cut(s) 145, 176, 616, 788, 1022
DraI TTTAAA 1 cut(s) 1188
Eam1104I CTCTTC 2 cut(s) 134, 626
EarI CTCTTC 2 cut(s) 134, 626
Eco130I CCWWGG 2 cut(s) 120, 304
Eco24I GRGCYC 2 cut(s) 120, 975
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 1026
EcoRII CCWGG 2 cut(s) 943, 1287
EcoT14I CCWWGG 2 cut(s) 120, 304
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 120, 975
EgeI GGCGCC 1 cut(s) 688
EheI GGCGCC 1 cut(s) 688
ErhI CCWWGG 2 cut(s) 120, 304
FaeI CATG 5 cut(s) 308, 463, 513, 1097, 1270
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 3 cut(s) 364, 406, 817
FatI CATG 5 cut(s) 304, 459, 509, 1093, 1266
Fnu4HI GCNGC 9 cut(s) 356, 483, 491, 516, 705, 777, 780, 912, 941
FokI GGATG 4 cut(s) 199, 890, 1052, 1238
FriOI GRGCYC 2 cut(s) 120, 975
Fsp4HI GCNGC 9 cut(s) 356, 483, 491, 516, 705, 777, 780, 912, 941
FspBI CTAG 2 cut(s) 519, 1179
FspI TGCGCA 1 cut(s) 494
GlaI GCGC 2 cut(s) 494, 688
GluI GCNGC 9 cut(s) 356, 483, 491, 516, 705, 777, 780, 912, 941
HaeII RGCGCY 1 cut(s) 690
HaeIII GGCC 3 cut(s) 309, 400, 1156
HapII CCGG 2 cut(s) 365, 396
HhaI GCGC 2 cut(s) 495, 689
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 5 cut(s) 308, 463, 513, 1097, 1270
Hin6I GCGC 2 cut(s) 493, 687
HinP1I GCGC 2 cut(s) 493, 687
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 77, 793
HinfI GANTC 7 cut(s) 214, 240, 377, 881, 1040, 1052, 1315
HpaII CCGG 2 cut(s) 365, 396
HphI GGTGA 7 cut(s) 488, 1042, 1147, 1177, 1222, 1258, 1324
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 7 cut(s) 23, 205, 213, 696, 739, 877, 1057
Hpy188III TCNNGA 6 cut(s) 149, 184, 416, 551, 628, 786
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 4 cut(s) 320, 371, 701, 1146
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 521, 710, 749, 776, 917
HpyF3I CTNAG 3 cut(s) 350, 816, 962
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 5 cut(s) 308, 463, 513, 1097, 1270
HspAI GCGC 2 cut(s) 493, 687
KasI GGCGCC 1 cut(s) 686
Kzo9I GATC 5 cut(s) 145, 176, 616, 788, 1022
LmnI GCTCC 4 cut(s) 106, 363, 937, 1291
Lsp1109I GCAGC 9 cut(s) 367, 477, 494, 502, 716, 763, 791, 898, 927
LweI GCATC 3 cut(s) 469, 683, 1211
MaeI CTAG 2 cut(s) 519, 1179
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 7 cut(s) 149, 154, 195, 462, 649, 745, 1246
MalI GATC 5 cut(s) 147, 178, 618, 790, 1024
MboI GATC 5 cut(s) 145, 176, 616, 788, 1022
MboII GAAGA 5 cut(s) 36, 121, 202, 249, 643
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 176, 1022
MhlI GDGCHC 5 cut(s) 120, 526, 867, 975, 1217
MluCI AATT 5 cut(s) 447, 588, 1087, 1138, 1158
Mly113I GGCGCC 1 cut(s) 687
MlyI GAGTC 4 cut(s) 208, 386, 875, 1061
MmeI TCCRAC 3 cut(s) 74, 855, 915
Mph1103I ATGCAT 1 cut(s) 676
MseI TTAA 3 cut(s) 36, 1008, 1187
MslI CAYNNNNRTG 1 cut(s) 1074
MspI CCGG 2 cut(s) 365, 396
MspR9I CCNGG 3 cut(s) 397, 945, 1289
MssI GTTTAAAC 1 cut(s) 1188
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 945, 1289
MwoI GCNNNNNNNGC 6 cut(s) 107, 521, 710, 749, 776, 917
NarI GGCGCC 1 cut(s) 687
NciI CCSGG 1 cut(s) 397
NcoI CCATGG 1 cut(s) 304
NdeII GATC 5 cut(s) 145, 176, 616, 788, 1022
NlaIII CATG 5 cut(s) 308, 463, 513, 1097, 1270
NlaIV GGNNCC 5 cut(s) 394, 575, 688, 893, 1332
NmuCI GTSAC 6 cut(s) 149, 195, 462, 649, 745, 1246
NsbI TGCGCA 1 cut(s) 494
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 463
PaqCI CACCTGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 276
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 240, 1040, 1315
PflMI CCANNNNNTGG 1 cut(s) 841
PkrI GCNGC 9 cut(s) 357, 484, 492, 517, 706, 778, 781, 913, 942
PleI GAGTC 4 cut(s) 208, 385, 875, 1060
PluTI GGCGCC 1 cut(s) 690
PmeI GTTTAAAC 1 cut(s) 1188
PpsI GAGTC 4 cut(s) 208, 385, 875, 1060
PsiI TTATAA 1 cut(s) 1119
Psp6I CCWGG 2 cut(s) 943, 1287
PspGI CCWGG 2 cut(s) 943, 1287
PspN4I GGNNCC 5 cut(s) 394, 575, 688, 893, 1332
PspPI GGNCC 2 cut(s) 393, 398
PstI CTGCAG 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 2 cut(s) 176, 1022
RseI CAYNNNNRTG 1 cut(s) 1074
SaqAI TTAA 3 cut(s) 36, 1008, 1187
SatI GCNGC 9 cut(s) 356, 483, 491, 516, 705, 777, 780, 912, 941
Sau3AI GATC 5 cut(s) 145, 176, 616, 788, 1022
Sau96I GGNCC 2 cut(s) 393, 398
SchI GAGTC 4 cut(s) 208, 386, 875, 1061
ScrFI CCNGG 3 cut(s) 397, 945, 1289
SduI GDGCHC 5 cut(s) 120, 526, 867, 975, 1217
SfaNI GCATC 3 cut(s) 469, 683, 1211
SfcI CTRYAG 2 cut(s) 777, 885
SfoI GGCGCC 1 cut(s) 688
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 1 cut(s) 784
SmoI CTYRAG 1 cut(s) 784
Sse9I AATT 5 cut(s) 447, 588, 1087, 1138, 1158
SspDI GGCGCC 1 cut(s) 686
SspI AATATT 1 cut(s) 1174
SspMI CTAG 2 cut(s) 519, 1179
StyD4I CCNGG 3 cut(s) 395, 943, 1287
StyI CCWWGG 2 cut(s) 120, 304
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 261, 270, 627, 1038
TasI AATT 5 cut(s) 447, 588, 1087, 1138, 1158
TfiI GAWTC 3 cut(s) 240, 1040, 1315
Tru1I TTAA 3 cut(s) 36, 1008, 1187
Tru9I TTAA 3 cut(s) 36, 1008, 1187
TscAI CASTG 5 cut(s) 204, 354, 549, 715, 777
TseFI GTSAC 6 cut(s) 149, 195, 462, 649, 745, 1246
TseI GCWGC 9 cut(s) 355, 482, 490, 515, 704, 776, 779, 911, 940
Tsp45I GTSAC 6 cut(s) 149, 195, 462, 649, 745, 1246
TspDTI ATGAA 6 cut(s) 20, 203, 490, 1054, 1082, 1100
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 5 cut(s) 204, 354, 549, 715, 777
Van91I CCANNNNNTGG 1 cut(s) 841
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 2 cut(s) 1087, 1138
XceI RCATGY 1 cut(s) 463
XspI CTAG 2 cut(s) 519, 1179
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.