AT3G21610

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003991
Physical Location & Seq
Reverse (-)
7608942 .. 7610803
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21610.2

Sequence Viewer

Length: 525 bp
ATGGACGAGGTGATGACAGCGGCGGACGTTGGTTCGTTAGGTGGCGGCAATAGGGCGTTGTACGGATCTCCTCCGTCGCATAATCTGTTTCCTCACAATCTCCCAATCTTCTCCGCTTTTCTTGCCTTCGCTCTTGCTCAGTTCCTCAAAGTCTTCACTAATTGGTACAAAGAAAAGAGGTGGGACTCTAAACGTATGATTAGTTCTGGTGGAATGCCTTCTTCTCATTCTGCTACTGTCACTGCCTTAGCTGTTGCCATTGGCTTTGAAGAAGGAGCTGGAGCACCAGCTTTTGCTATTGCAGTTGTCTTGGCTTGCGTTGTTATGTATGATGCCTCTGGTGTCAGGCTTCATGCTGGTCGTCAAGCCGAGCTGCTGAATCAAATTGTTTGTGAGTTTCCTCCGGAGCATCCATTATCAACAGTTAGACCATTGCGTGAACTGCTTGGCCACACTCCTATCCAGGTTGCAGCAGGTGGGATTTTAGGATGCGTGGTAGCTTACTTAATGAGGAGCTCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

174

Amino Acids

18.47

Weight (kDa)

7.01

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 4 - 114 1.1e-42 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 464
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 4 cut(s) 20, 23, 45, 114
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 448
AfaI GTAC 2 cut(s) 62, 167
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 7 cut(s) 251, 278, 290, 373, 500, 516, 522
AluI AGCT 7 cut(s) 251, 278, 290, 373, 500, 516, 522
Alw21I GWGCWC 2 cut(s) 286, 518
AlwI GGATC 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 373, 470
Asp700I GAANNNNTTC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 22
BalI TGGCCA 1 cut(s) 450
BanII GRGCYC 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 2 cut(s) 286, 518
BbvI GCAGC 2 cut(s) 360, 482
BciT130I CCWGG 1 cut(s) 464
BfaI CTAG 1 cut(s) 523
BfuAI ACCTGC 1 cut(s) 464
BisI GCNGC 4 cut(s) 21, 46, 374, 471
BlsI GCNGC 4 cut(s) 22, 47, 375, 472
Bme1390I CCNGG 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 3 cut(s) 322, 418, 479
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 502
BsaWI WCCGGW 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 1 cut(s) 464
BseGI GGATG 2 cut(s) 409, 494
BseMI GCAATG 1 cut(s) 431
BseMII CTCAG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 360, 482
BshFI GGCC 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 286, 518
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 286, 518
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 4 cut(s) 20, 23, 45, 114
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 431
BssMI GATC 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 238, 424
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 138, 247
BstF5I GGATG 2 cut(s) 409, 494
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 122, 442
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 462
BstV1I GCAGC 2 cut(s) 360, 482
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 450
BtsCI GGATG 2 cut(s) 409, 494
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 61, 166
CviAII CATG 1 cut(s) 353
CviQI GTAC 2 cut(s) 61, 166
DdeI CTNAG 2 cut(s) 138, 247
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 448
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 516
Eco24I GRGCYC 1 cut(s) 518
Eco53kI GAGCTC 1 cut(s) 516
EcoICRI GAGCTC 1 cut(s) 516
EcoRII CCWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 518
FaeI CATG 1 cut(s) 356
FaiI YATR 5 cut(s) 81, 197, 326, 330, 354
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 21, 46, 374, 471
FokI GGATG 2 cut(s) 396, 501
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 4 cut(s) 21, 46, 374, 471
FspBI CTAG 1 cut(s) 523
GluI GCNGC 4 cut(s) 21, 46, 374, 471
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 404
Hin1II CATG 1 cut(s) 356
HinfI GANTC 2 cut(s) 185, 379
HpaII CCGG 1 cut(s) 404
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 440
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 1 cut(s) 440
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 136, 228, 266
HpyCH4III ACNGT 2 cut(s) 238, 424
HpyCH4IV ACGT 2 cut(s) 27, 193
HpyCH4V TGCA 2 cut(s) 302, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 442
HpyF3I CTNAG 2 cut(s) 138, 247
HpySE526I ACGT 2 cut(s) 27, 193
Hsp92II CATG 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 403
Kzo9I GATC 1 cut(s) 65
LmnI GCTCC 4 cut(s) 275, 281, 406, 513
Lsp1109I GCAGC 2 cut(s) 360, 482
LweI GCATC 3 cut(s) 322, 418, 479
MaeI CTAG 1 cut(s) 523
MaeII ACGT 2 cut(s) 27, 193
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 4 cut(s) 100, 145, 213, 281
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 286, 518
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 2 cut(s) 160, 384
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 7 cut(s) 81, 102, 155, 171, 346, 411, 504
Mox20I TGGCCA 1 cut(s) 450
MroI TCCGGA 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 217
MscI TGGCCA 1 cut(s) 450
MseI TTAA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 464
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 122, 442
NdeII GATC 1 cut(s) 65
NlaIII CATG 1 cut(s) 356
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 464
PctI GAATGC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 4 cut(s) 22, 47, 375, 472
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PsrI GAACNNNNNNTAC 2 cut(s) 187, 219
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 2 cut(s) 62, 167
RsaNI GTAC 2 cut(s) 61, 166
SacI GAGCTC 1 cut(s) 518
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 4 cut(s) 21, 46, 374, 471
Sau3AI GATC 1 cut(s) 65
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 286, 518
SfaNI GCATC 3 cut(s) 322, 418, 479
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 2 cut(s) 160, 384
SsiI CCGC 4 cut(s) 20, 23, 45, 114
SspMI CTAG 1 cut(s) 523
SstI GAGCTC 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 238, 424
TaiI ACGT 2 cut(s) 30, 196
TasI AATT 2 cut(s) 160, 384
TauI GCSGC 2 cut(s) 23, 48
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 2 cut(s) 373, 470
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 2 cut(s) 63, 78
TspRI CASTG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.