Rroxscaffold_2G00091190

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003991
Physical Location & Seq
Reverse (-)
12795964 .. 12797752
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091190.1

Sequence Viewer

Length: 495 bp
ATGGACGAGGTGATGACGGCTGCCGATGCGACTGCCGGCGGCGCCACGACGTCGTCACCGGCATGGATCCCGGCAAACCTGGCTCTCATCTCCGCCTTCCTCGCCTGCGCCGTCGCTCAGTTCCTCAAGCTCTTCACGTCCTGGTATAAAGATAGGAGATGGGATTCGAAACGAATGCTGGATTCTGGAGGAATGCCGTCGTCGCATTCGGCGACGGTGACGGCGCTGACGGTGGCCGTTGGGCTAGACCAGGGCACCGGAGGATCGGCTTTTGCTCTTGCCCTGGTCTTAGCGGTAATGTATGACGCCACAGGAGTGAGACTTCATGCTGGTCGCCAAGCCGAATTGCTGAACCAAATTGTGTGTGAGCTTCCTCCGGAGCATCCTTTGTCCGCTGTTAGACCCTTACGTGATTCGCTTGGACATACTCCAGTACAGGTTGTTGCTGGTGCTATTTTGGGATGCATAGTAGCATATCTAATGAGGGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

164

Amino Acids

17.12

Weight (kDa)

6.39

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 26 - 157 9.3e-47 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AccB1I GGYRCC 2 cut(s) 41, 254
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 4 cut(s) 39, 93, 293, 393
AclWI GGATC 3 cut(s) 61, 74, 271
AcoI YGGCCR 1 cut(s) 234
AcyI GRCGYC 3 cut(s) 42, 50, 306
AfaI GTAC 1 cut(s) 435
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 4 cut(s) 78, 140, 249, 282
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 2 cut(s) 130, 370
AluI AGCT 2 cut(s) 130, 370
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 3 cut(s) 61, 74, 271
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 20, 488
AspLEI GCGC 3 cut(s) 44, 110, 226
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 22, 48, 229
AsuII TTCGAA 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 257
BamHI GGATCC 1 cut(s) 66
BanI GGYRCC 2 cut(s) 41, 254
BbvI GCAGC 2 cut(s) 7, 475
BccI CCATC 1 cut(s) 153
BceAI ACGGC 5 cut(s) 33, 95, 181, 221, 237
BcgI CGANNNNNNTGC 4 cut(s) 14, 48, 157, 191
BciT130I CCWGG 4 cut(s) 80, 142, 251, 284
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 245
BfoI RGCGCY 2 cut(s) 45, 227
BisI GCNGC 3 cut(s) 21, 40, 489
BlsI GCNGC 3 cut(s) 22, 41, 490
Bme1390I CCNGG 5 cut(s) 71, 80, 142, 251, 284
BmgBI CACGTC 1 cut(s) 138
BmiI GGNNCC 3 cut(s) 43, 68, 256
BmrFI CCNGG 5 cut(s) 71, 80, 142, 251, 284
BmsI GCATC 3 cut(s) 16, 391, 452
BpmI CTGGAG 2 cut(s) 207, 414
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 410
BsaHI GRCGYC 3 cut(s) 42, 50, 306
BsaJI CCNNGG 2 cut(s) 250, 282
BsaWI WCCGGW 2 cut(s) 257, 376
Bse118I RCCGGY 2 cut(s) 35, 58
Bse1I ACTGG 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 4 cut(s) 80, 142, 251, 284
BseDI CCNNGG 2 cut(s) 250, 282
BseGI GGATG 2 cut(s) 382, 467
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 2 cut(s) 7, 475
BshFI GGCC 1 cut(s) 236
BshNI GGYRCC 2 cut(s) 41, 254
BsiSI CCGG 5 cut(s) 36, 59, 71, 258, 377
BsmAI GTCTC 1 cut(s) 313
BsmI GAATGC 3 cut(s) 180, 198, 205
BsnI GGCC 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 257
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 2 cut(s) 66, 263
BspACI CCGC 4 cut(s) 39, 93, 293, 393
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 130
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 43, 68, 256
BspPI GGATC 3 cut(s) 61, 74, 271
BspQI GCTCTTC 1 cut(s) 137
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 2 cut(s) 41, 254
BsrFI RCCGGY 2 cut(s) 35, 58
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 2 cut(s) 35, 58
BssECI CCNNGG 2 cut(s) 250, 282
BssMI GATC 2 cut(s) 66, 263
BssNI GRCGYC 3 cut(s) 42, 50, 306
Bst2UI CCWGG 4 cut(s) 80, 142, 251, 284
Bst4CI ACNGT 2 cut(s) 217, 232
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 3 cut(s) 42, 50, 306
BstBAI YACGTR 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 37, 106
BstDEI CTNAG 3 cut(s) 117, 289, 492
BstF5I GGATG 2 cut(s) 382, 467
BstH2I RGCGCY 2 cut(s) 45, 227
BstHHI GCGC 3 cut(s) 44, 110, 226
BstKTI GATC 2 cut(s) 69, 266
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 66, 263
BstMWI GCNNNNNNNGC 5 cut(s) 26, 41, 80, 101, 202
BstNI CCWGG 4 cut(s) 80, 142, 251, 284
BstSCI CCNGG 5 cut(s) 69, 78, 140, 249, 282
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 7, 475
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 236
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 382, 467
Cac8I GCNNGC 2 cut(s) 37, 106
CfoI GCGC 3 cut(s) 44, 110, 226
Cfr10I RCCGGY 2 cut(s) 35, 58
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 434
CviAII CATG 2 cut(s) 63, 326
CviJI RGCY 9 cut(s) 20, 83, 130, 236, 244, 269, 341, 370, 488
CviKI_1 RGCY 9 cut(s) 20, 83, 130, 236, 244, 269, 341, 370, 488
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 3 cut(s) 117, 289, 492
DinI GGCGCC 1 cut(s) 43
DpnI GATC 2 cut(s) 68, 265
DpnII GATC 2 cut(s) 66, 263
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 82
EcoRII CCWGG 4 cut(s) 78, 140, 249, 282
EcoT22I ATGCAT 1 cut(s) 467
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 2 cut(s) 66, 329
FaiI YATR 7 cut(s) 64, 147, 303, 327, 426, 467, 475
FatI CATG 2 cut(s) 62, 325
Fnu4HI GCNGC 3 cut(s) 21, 40, 489
FokI GGATG 2 cut(s) 369, 474
Fsp4HI GCNGC 3 cut(s) 21, 40, 489
FspBI CTAG 1 cut(s) 245
GlaI GCGC 3 cut(s) 43, 109, 225
GluI GCNGC 3 cut(s) 21, 40, 489
GsuI CTGGAG 2 cut(s) 207, 414
HaeII RGCGCY 2 cut(s) 45, 227
HaeIII GGCC 1 cut(s) 236
HapII CCGG 5 cut(s) 36, 59, 71, 258, 377
HgaI GACGC 1 cut(s) 314
HhaI GCGC 3 cut(s) 44, 110, 226
Hin1I GRCGYC 3 cut(s) 42, 50, 306
Hin1II CATG 2 cut(s) 66, 329
Hin6I GCGC 3 cut(s) 42, 108, 224
HinP1I GCGC 3 cut(s) 42, 108, 224
HinfI GANTC 3 cut(s) 164, 182, 413
HpaII CCGG 5 cut(s) 36, 59, 71, 258, 377
HphI GGTGA 3 cut(s) 22, 48, 229
Hpy188III TCNNGA 2 cut(s) 186, 377
Hpy99I CGWCG 6 cut(s) 52, 55, 116, 202, 205, 217
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 217, 232
HpyCH4IV ACGT 3 cut(s) 50, 137, 409
HpyCH4V TGCA 1 cut(s) 465
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 41, 80, 101, 202
HpyF3I CTNAG 3 cut(s) 117, 289, 492
HpySE526I ACGT 3 cut(s) 50, 137, 409
Hsp92I GRCGYC 3 cut(s) 42, 50, 306
Hsp92II CATG 2 cut(s) 66, 329
HspAI GCGC 3 cut(s) 42, 108, 224
KasI GGCGCC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 376
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 66, 263
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 2 cut(s) 7, 475
LweI GCATC 3 cut(s) 16, 391, 452
MaeI CTAG 1 cut(s) 245
MaeII ACGT 3 cut(s) 50, 137, 409
MaeIII GTNAC 2 cut(s) 54, 217
MalI GATC 2 cut(s) 68, 265
MboI GATC 2 cut(s) 66, 263
MboII GAAGA 1 cut(s) 124
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 2 cut(s) 344, 357
Mly113I GGCGCC 1 cut(s) 42
MnlI CCTC 6 cut(s) 110, 134, 182, 254, 384, 477
Mph1103I ATGCAT 1 cut(s) 467
MroI TCCGGA 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 35
MslI CAYNNNNRTG 2 cut(s) 61, 314
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 5 cut(s) 36, 59, 71, 258, 377
MspR9I CCNGG 5 cut(s) 71, 80, 142, 251, 284
Mva1269I GAATGC 3 cut(s) 180, 198, 205
MvaI CCWGG 4 cut(s) 80, 142, 251, 284
MwoI GCNNNNNNNGC 5 cut(s) 26, 41, 80, 101, 202
NaeI GCCGGC 1 cut(s) 37
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 1 cut(s) 71
NdeII GATC 2 cut(s) 66, 263
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 66, 329
NlaIV GGNNCC 3 cut(s) 43, 68, 256
NmuCI GTSAC 2 cut(s) 54, 217
NsiI ATGCAT 1 cut(s) 467
NspV TTCGAA 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 209
PctI GAATGC 3 cut(s) 180, 198, 205
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 3 cut(s) 164, 182, 413
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 3 cut(s) 22, 41, 490
PluTI GGCGCC 1 cut(s) 45
Ppu21I YACGTR 1 cut(s) 410
Psp6I CCWGG 4 cut(s) 78, 140, 249, 282
PspGI CCWGG 4 cut(s) 78, 140, 249, 282
PspN4I GGNNCC 3 cut(s) 43, 68, 256
PsuI RGATCY 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 2 cut(s) 61, 314
SapI GCTCTTC 1 cut(s) 137
SatI GCNGC 3 cut(s) 21, 40, 489
Sau3AI GATC 2 cut(s) 66, 263
ScrFI CCNGG 5 cut(s) 71, 80, 142, 251, 284
SduI GDGCHC 1 cut(s) 257
SetI ASST 8 cut(s) 12, 53, 81, 132, 140, 372, 412, 441
SfaNI GCATC 3 cut(s) 16, 391, 452
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 61, 314
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 344, 357
SsiI CCGC 4 cut(s) 39, 93, 293, 393
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 5 cut(s) 69, 78, 140, 249, 282
TaaI ACNGT 2 cut(s) 217, 232
TaiI ACGT 3 cut(s) 53, 140, 412
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 344, 357
TatI WGTACW 1 cut(s) 433
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 3 cut(s) 164, 182, 413
TseFI GTSAC 2 cut(s) 54, 217
TseI GCWGC 2 cut(s) 20, 488
Tsp45I GTSAC 2 cut(s) 54, 217
TspDTI ATGAA 1 cut(s) 314
Tth111I GACNNNGTC 1 cut(s) 52
XspI CTAG 1 cut(s) 245
ZraI GACGTC 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.