Rorug05G0189700

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003991
Physical Location & Seq
Forward (+)
18422891 .. 18424280
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0189700.1

Sequence Viewer

Length: 1296 bp
ATGAAGGTTGAAATCATTGAGAGGAAAATAATTAAGCCATCCTCCCCAACTCCTCATCATCTTAGAAATTTTGAGCTGTCATTTTTCGATCAGATGGCAATTACAATTTACACTCCACTCCTTCTCTTCTTTCCAAATACTACTGCTAGTAAGCTTGAAATATGTGAGCATCTAACAGAATCATTAGGTAAAACTCTCACTCACTTCTACCCTTTAGCAGGAAGAATGAAAGGTAATACAGTGGTCGAATGTAATGATGATGGAGCTGAATTTGTCAAAGCGCAAGTCACCTGTTCCTTATCAGATTTTCTAGAAAATCCAGAAGCCGAGATATTAGAACAGTTCCTTCCAGCTGAGATTTTATCCAAAGAGGCAGGGACTGGTCCTTTGCTTCTTGTGCAAGTCAACTTGTTCGAGTGTGGTGGAATGGCAATTGGGTTTAGCATTTCACATAAGATTGCTGATGCCTCCACACTGTCCACATTCATCAATTGCTGGGCTCAAGTAACAAATACAACCAGTACTGATAGTGAGGTAATGCTACCAGAATTTGGTTCGGCATCTCTCTTTCCACCACAAGATTTCTCACAGCCACCAGCCCTAGTATACTCCAAAAAGAAAATCAATATAACAAGGAGGTATGTGTTTGATGCCTCAAACATTTCTGCTCTACAATCTAAAGTGGCTAGTTCAGCTGTGCCACAACCTACACGTGTAGAAGCGATTTCAGCACTCATTTGGAAATGTGCAGTCGAAGCATCAACATCAAAATCAGGATCTCAAAGGCCATCAGTGTTCAGCCAAGATGTGAACTTGCGTAAAAGGGTTGTGCCGCCCTTGCCTGAAAATTTTGCTGGGAATGTTGTAGGTTTTTATAGATCAAAGGCTGAAGTTGAAGACGGTACTAGTGTGGCCATAGATCTAAAAGACTTGGTTTCTAAATTCAGGGAAGGGATTGAAAACTATGCTGCTATAACAAAAACCATATTTGGTTCTGATGAAGCATGGCAAGGGATCAAAGATACGTACAAGAACCTGAAAAAAAGTGATGACATGGAGTTCTACAGCTGCACAAGTTGGTGTAGGTTTCCTTTTTATGAAGTAGATTTTGGATGGGGAAAGCCAAAATGGGTGAGCATTGCTAGTGTTTCAATTGAAAATATTATTGTTTTGTTGGATAAAAGAGATGGGAATGGAATAGAAGCATGGTTGACTATGAAACAAGAAAACATGGCCTTATTTGAGAGCAGTACAGAGCTGCTTGCATATGCTTCTGTAAATCCAAGTGTCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

431

Amino Acids

47.77

Weight (kDa)

5.23

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 420 5.1e-98 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 551
AccI GTMKAC 1 cut(s) 606
AciI CCGC 1 cut(s) 833
AclWI GGATC 2 cut(s) 784, 1022
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 5 cut(s) 67, 269, 548, 847, 941
AcuI CTGAAG 1 cut(s) 909
AcvI CACGTG 1 cut(s) 713
AfaI GTAC 4 cut(s) 523, 904, 1028, 1252
AfiI CCNNNNNNNGG 2 cut(s) 218, 551
AflIII ACRYGT 2 cut(s) 710, 712
AgsI TTSAA 6 cut(s) 11, 158, 896, 959, 1152, 1157
AhlI ACTAGT 1 cut(s) 905
AjuI GAANNNNNNNTTGG 2 cut(s) 1092, 1124
AluBI AGCT 7 cut(s) 76, 154, 266, 353, 695, 1068, 1258
AluI AGCT 7 cut(s) 76, 154, 266, 353, 695, 1068, 1258
AlwI GGATC 2 cut(s) 784, 1022
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 3 cut(s) 785, 912, 1233
ApeKI GCWGC 3 cut(s) 968, 1068, 1258
ApoI RAATTY 5 cut(s) 67, 269, 548, 847, 941
ArsI GACNNNNNNTTYG 4 cut(s) 270, 302, 370, 402
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 3 cut(s) 280, 1144, 1282
AvaII GGWCC 1 cut(s) 383
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BalI TGGCCA 1 cut(s) 914
BanII GRGCYC 1 cut(s) 502
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 903
BbvI GCAGC 3 cut(s) 955, 1055, 1245
BccI CCATC 6 cut(s) 46, 88, 254, 796, 1107, 1181
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 6 cut(s) 147, 311, 602, 687, 906, 1143
BfmI CTRYAG 1 cut(s) 1063
BglII AGATCT 1 cut(s) 919
BisI GCNGC 4 cut(s) 833, 969, 1069, 1259
BlsI GCNGC 4 cut(s) 834, 970, 1070, 1260
BmcAI AGTACT 1 cut(s) 523
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 383
BmsI GCATC 5 cut(s) 178, 454, 569, 640, 767
BpiI GAAGAC 1 cut(s) 903
BpuEI CTTGAG 1 cut(s) 486
BsaAI YACGTR 2 cut(s) 713, 1026
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 551
Bse1I ACTGG 2 cut(s) 385, 519
Bse3DI GCAATG 1 cut(s) 1137
BseGI GGATG 2 cut(s) 38, 1118
BseLI CCNNNNNNNGG 2 cut(s) 218, 551
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 385, 519
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 3 cut(s) 955, 1055, 1245
BseYI CCCAGC 2 cut(s) 495, 854
BsgI GTGCAG 2 cut(s) 768, 1054
BshFI GGCC 3 cut(s) 787, 914, 1235
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 218, 551
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 3 cut(s) 787, 914, 1235
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 5 cut(s) 88, 776, 878, 919, 1014
BspACI CCGC 1 cut(s) 833
BspANI GGCC 3 cut(s) 787, 914, 1235
BspCNI CTCAG 1 cut(s) 346
BspPI GGATC 2 cut(s) 784, 1022
BsrDI GCAATG 1 cut(s) 1137
BsrI ACTGG 2 cut(s) 385, 519
BssMI GATC 5 cut(s) 88, 776, 878, 919, 1014
BssNAI GTATAC 1 cut(s) 607
Bst1107I GTATAC 1 cut(s) 607
Bst4CI ACNGT 4 cut(s) 241, 342, 477, 902
Bst6I CTCTTC 1 cut(s) 131
BstBAI YACGTR 2 cut(s) 713, 1026
BstC8I GCNNGC 1 cut(s) 1263
BstDEI CTNAG 2 cut(s) 62, 354
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 38, 1118
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 5 cut(s) 91, 779, 881, 922, 1017
BstMBI GATC 5 cut(s) 88, 776, 878, 919, 1014
BstMWI GCNNNNNNNGC 5 cut(s) 397, 692, 728, 755, 838
BstSFI CTRYAG 1 cut(s) 1063
BstSNI TACGTA 1 cut(s) 1026
BstV1I GCAGC 3 cut(s) 955, 1055, 1245
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 2 cut(s) 776, 919
BstYI RGATCY 2 cut(s) 776, 919
BstZ17I GTATAC 1 cut(s) 607
BsuRI GGCC 3 cut(s) 787, 914, 1235
BtsCI GGATG 2 cut(s) 38, 1118
BtsIMutI CAGTG 3 cut(s) 246, 473, 798
Cac8I GCNNGC 1 cut(s) 1263
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 4 cut(s) 522, 903, 1027, 1251
CviAII CATG 4 cut(s) 1005, 1054, 1206, 1231
CviQI GTAC 4 cut(s) 522, 903, 1027, 1251
DdeI CTNAG 2 cut(s) 62, 354
DpnI GATC 5 cut(s) 90, 778, 880, 921, 1016
DpnII GATC 5 cut(s) 88, 776, 878, 919, 1014
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco105I TACGTA 1 cut(s) 1026
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 909
Eco72I CACGTG 1 cut(s) 713
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 502
FaeI CATG 4 cut(s) 1008, 1057, 1209, 1234
FaqI GGGAC 1 cut(s) 391
FatI CATG 4 cut(s) 1004, 1053, 1205, 1230
FauNDI CATATG 1 cut(s) 1267
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 4 cut(s) 833, 969, 1069, 1259
FokI GGATG 2 cut(s) 25, 1125
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 4 cut(s) 833, 969, 1069, 1259
FspBI CTAG 6 cut(s) 147, 311, 602, 687, 906, 1143
GlaI GCGC 1 cut(s) 282
GluI GCNGC 4 cut(s) 833, 969, 1069, 1259
GsaI CCCAGC 2 cut(s) 499, 858
HaeIII GGCC 3 cut(s) 787, 914, 1235
HhaI GCGC 1 cut(s) 283
Hin1II CATG 4 cut(s) 1008, 1057, 1209, 1234
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 406, 1212
HindII GTYRAC 2 cut(s) 406, 1212
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 179
HphI GGTGA 3 cut(s) 280, 1144, 1282
Hpy166II GTNNAC 5 cut(s) 406, 480, 607, 811, 1212
Hpy188I TCNGA 3 cut(s) 93, 304, 997
Hpy188III TCNNGA 3 cut(s) 311, 320, 774
Hpy8I GTNNAC 5 cut(s) 406, 480, 607, 811, 1212
HpyAV CCTTC 3 cut(s) 131, 356, 944
HpyCH4III ACNGT 4 cut(s) 241, 342, 477, 902
HpyCH4IV ACGT 2 cut(s) 712, 1025
HpyCH4V TGCA 4 cut(s) 400, 749, 1071, 1265
HpyF10VI GCNNNNNNNGC 5 cut(s) 397, 692, 728, 755, 838
HpyF3I CTNAG 2 cut(s) 62, 354
HpySE526I ACGT 2 cut(s) 712, 1025
Hsp92II CATG 4 cut(s) 1008, 1057, 1209, 1234
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 5 cut(s) 88, 776, 878, 919, 1014
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 3 cut(s) 955, 1055, 1245
LweI GCATC 5 cut(s) 178, 454, 569, 640, 767
MaeI CTAG 6 cut(s) 147, 311, 602, 687, 906, 1143
MaeII ACGT 2 cut(s) 712, 1025
MaeIII GTNAC 3 cut(s) 286, 505, 1288
MalI GATC 5 cut(s) 90, 778, 880, 921, 1016
MboI GATC 5 cut(s) 88, 776, 878, 919, 1014
MboII GAAGA 3 cut(s) 118, 234, 908
MfeI CAATTG 3 cut(s) 432, 490, 1152
MflI RGATCY 2 cut(s) 776, 919
MhlI GDGCHC 1 cut(s) 502
MlsI TGGCCA 1 cut(s) 914
MluNI TGGCCA 1 cut(s) 914
MmeI TCCRAC 1 cut(s) 1155
MnlI CCTC 8 cut(s) 15, 52, 63, 364, 478, 526, 630, 664
Mox20I TGGCCA 1 cut(s) 914
MscI TGGCCA 1 cut(s) 914
MseI TTAA 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 914
MspA1I CMGCKG 3 cut(s) 353, 695, 1068
MunI CAATTG 3 cut(s) 432, 490, 1152
MwoI GCNNNNNNNGC 5 cut(s) 397, 692, 728, 755, 838
NdeI CATATG 1 cut(s) 1267
NdeII GATC 5 cut(s) 88, 776, 878, 919, 1014
NlaIII CATG 4 cut(s) 1008, 1057, 1209, 1234
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 286, 1288
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 551
PkrI GCNGC 4 cut(s) 834, 970, 1070, 1260
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
Ppu21I YACGTR 2 cut(s) 713, 1026
PspCI CACGTG 1 cut(s) 713
PspFI CCCAGC 2 cut(s) 495, 854
PspPI GGNCC 1 cut(s) 383
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 776, 919
PvuII CAGCTG 3 cut(s) 353, 695, 1068
RsaI GTAC 4 cut(s) 523, 904, 1028, 1252
RsaNI GTAC 4 cut(s) 522, 903, 1027, 1251
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 4 cut(s) 833, 969, 1069, 1259
Sau3AI GATC 5 cut(s) 88, 776, 878, 919, 1014
Sau96I GGNCC 1 cut(s) 383
ScaI AGTACT 1 cut(s) 523
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 5 cut(s) 178, 454, 569, 640, 767
SfcI CTRYAG 1 cut(s) 1063
SinI GGWCC 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
SnaBI TACGTA 1 cut(s) 1026
SpeI ACTAGT 1 cut(s) 905
SsiI CCGC 1 cut(s) 833
SspI AATATT 1 cut(s) 1162
SspMI CTAG 6 cut(s) 147, 311, 602, 687, 906, 1143
TaaI ACNGT 4 cut(s) 241, 342, 477, 902
TaiI ACGT 2 cut(s) 715, 1028
TaqI TCGA 4 cut(s) 87, 246, 414, 753
TatI WGTACW 2 cut(s) 521, 1250
TauI GCSGC 1 cut(s) 835
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 246, 480, 798
TseFI GTSAC 2 cut(s) 286, 1288
TseI GCWGC 3 cut(s) 968, 1068, 1258
Tsp45I GTSAC 2 cut(s) 286, 1288
TspDTI ATGAA 6 cut(s) 17, 242, 475, 1014, 1113, 1232
TspRI CASTG 3 cut(s) 246, 480, 798
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 383
XagI CCTNNNNNAGG 1 cut(s) 216
XapI RAATTY 5 cut(s) 67, 269, 548, 847, 941
XbaI TCTAGA 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 606
XspI CTAG 6 cut(s) 147, 311, 602, 687, 906, 1143
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.