FvH4_6g46670
NAC Family

NAC domain protein, IPR003441 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018468
Physical Location & Seq
Reverse (-)
35527093 .. 35528818
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46670.t1

Sequence Viewer

Length: 606 bp
ATGGCTGCTCCTCCTTTTCCAGGTCTCAGGTTTTATCAGCCCACTGATGATGAGATTATTAGGAATTACTTGGTCCCCAAGATACTGGGTACGCCGAAACCTTATGATACAATCACCACCGAAGATGTCTACTCCACCAGCCCTGAGCATCTTCCACTCGAAGAAAATGTCGACCACTTCAATGATAATGAATGGTACTTCTACACAACTAGGACAAACAAAAACCATTATTTGACAAGAAATGGCTACTACCTTACCACCTCTATGGATGAGCAGATCTTTCGTAACAATAAAGTGGTTGGTTTCAAGAGGATTCTGAGGTTTTACCTTGGTAGCAGGCCAGAAACAGGAATCAAAACCGAGTGGTCCGTCCATGAGTTTCAAGCTAACCCTGGTGTATTTCCAGCAGCGAATCTACTTGGTAATGTTGTCCAGGAGAAGCTATCCAGTTTGGTAGTGTGCAAAATTCTTCGTACACAAGAACCTTCTGTCAATGAATCGGAGGAAAGAGGCAGGGATGAAGGCGATTCTTCGGGGGTTGATATGGAGGAGCTACCGAGTACAAGTAAGAATCTAAAAGGAACTAAGCTGCCTCAGGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

202

Amino Acids

23.08

Weight (kDa)

5.13

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 128 5.6e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46670 FvH4_6g47070
rosa_chinensis RchiOBHm_Chr2g0166121
rosa_laevigata RLG00000021587
rosa_rugosa Rorug02G0520400
rosa_samantha Rh2AG586500 Rh2BG598300 Rh2CG569000 Rh2DG608200
rosa_wichuraiana Rw2G048890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 129, 171
AcsI RAATTY 1 cut(s) 465
AfaI GTAC 4 cut(s) 91, 197, 475, 562
AfiI CCNNNNNNNGG 2 cut(s) 20, 347
AgsI TTSAA 3 cut(s) 181, 307, 383
AjnI CCWGG 3 cut(s) 19, 391, 432
AluBI AGCT 4 cut(s) 386, 442, 553, 589
AluI AGCT 4 cut(s) 386, 442, 553, 589
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 3 cut(s) 5, 407, 589
ApoI RAATTY 1 cut(s) 465
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspS9I GGNCC 2 cut(s) 73, 366
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 73, 366
AxyI CCTNAGG 1 cut(s) 594
BbvI GCAGC 2 cut(s) 419, 576
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 3 cut(s) 21, 393, 434
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 210
BglII AGATCT 1 cut(s) 276
BisI GCNGC 3 cut(s) 6, 408, 590
BlsI GCNGC 3 cut(s) 7, 409, 591
Bme1390I CCNGG 3 cut(s) 21, 393, 434
Bme18I GGWCC 2 cut(s) 73, 366
BmgT120I GGNCC 2 cut(s) 73, 366
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 3 cut(s) 21, 393, 434
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 328, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 347
Bse1I ACTGG 2 cut(s) 90, 447
Bse21I CCTNAGG 1 cut(s) 594
BseBI CCWGG 3 cut(s) 21, 393, 434
BseDI CCNNGG 2 cut(s) 328, 391
BseGI GGATG 2 cut(s) 274, 523
BseLI CCNNNNNNNGG 2 cut(s) 20, 347
BseMII CTCAG 3 cut(s) 40, 135, 308
BseNI ACTGG 2 cut(s) 90, 447
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 2 cut(s) 419, 576
BshFI GGCC 1 cut(s) 340
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 20, 347
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 340
Bso31I GGTCTC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 3 cut(s) 39, 136, 309
BspLI GGNNCC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 29
BsrI ACTGG 2 cut(s) 90, 447
BssECI CCNNGG 2 cut(s) 328, 391
BssMI GATC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 3 cut(s) 21, 393, 434
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 5 cut(s) 26, 144, 317, 585, 594
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 274, 523
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 276
BstNI CCWGG 3 cut(s) 21, 393, 434
BstSCI CCNGG 3 cut(s) 19, 391, 432
BstV1I GCAGC 2 cut(s) 419, 576
BstX2I RGATCY 1 cut(s) 276
BstXI CCANNNNNNTGG 2 cut(s) 85, 265
BstYI RGATCY 1 cut(s) 276
Bsu36I CCTNAGG 1 cut(s) 594
BsuRI GGCC 1 cut(s) 340
BtsCI GGATG 2 cut(s) 274, 523
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 73, 366
Csp6I GTAC 4 cut(s) 90, 196, 474, 561
CviAII CATG 1 cut(s) 374
CviJI RGCY 9 cut(s) 5, 40, 141, 246, 340, 386, 442, 553, 589
CviKI_1 RGCY 9 cut(s) 5, 40, 141, 246, 340, 386, 442, 553, 589
CviQI GTAC 4 cut(s) 90, 196, 474, 561
DdeI CTNAG 5 cut(s) 26, 144, 317, 585, 594
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 73, 366
Eco81I CCTNAGG 1 cut(s) 594
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 19, 391, 432
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 377
FaiI YATR 4 cut(s) 105, 266, 375, 545
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 373
FblI GTMKAC 2 cut(s) 129, 171
Fnu4HI GCNGC 3 cut(s) 6, 408, 590
FokI GGATG 2 cut(s) 281, 530
Fsp4HI GCNGC 3 cut(s) 6, 408, 590
FspBI CTAG 1 cut(s) 210
GluI GCNGC 3 cut(s) 6, 408, 590
HaeIII GGCC 1 cut(s) 340
Hin1II CATG 1 cut(s) 377
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 6 cut(s) 313, 351, 412, 497, 527, 571
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 130, 172, 476
Hpy188I TCNGA 2 cut(s) 318, 502
Hpy188III TCNNGA 2 cut(s) 307, 596
Hpy8I GTNNAC 3 cut(s) 130, 172, 476
HpyAV CCTTC 2 cut(s) 495, 515
HpyCH4V TGCA 1 cut(s) 462
HpyF3I CTNAG 5 cut(s) 26, 144, 317, 585, 594
Hsp92II CATG 1 cut(s) 377
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 13, 550
Lsp1109I GCAGC 2 cut(s) 419, 576
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 5 cut(s) 134, 143, 173, 461, 522
MflI RGATCY 1 cut(s) 276
MluCI AATT 2 cut(s) 64, 465
MnlI CCTC 8 cut(s) 21, 271, 303, 312, 496, 503, 541, 603
MslI CAYNNNNRTG 2 cut(s) 180, 263
MspR9I CCNGG 3 cut(s) 21, 393, 434
MvaI CCWGG 3 cut(s) 21, 393, 434
NdeII GATC 1 cut(s) 276
NlaIII CATG 1 cut(s) 377
NlaIV GGNNCC 1 cut(s) 75
PfeI GAWTC 6 cut(s) 313, 351, 412, 497, 527, 571
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 3 cut(s) 7, 409, 591
Psp6I CCWGG 3 cut(s) 19, 391, 432
PspGI CCWGG 3 cut(s) 19, 391, 432
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 73, 366
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 4 cut(s) 91, 197, 475, 562
RsaNI GTAC 4 cut(s) 90, 196, 474, 561
RseI CAYNNNNRTG 2 cut(s) 180, 263
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 3 cut(s) 6, 408, 590
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 73, 366
ScrFI CCNGG 3 cut(s) 21, 393, 434
SfaNI GCATC 1 cut(s) 157
SinI GGWCC 2 cut(s) 73, 366
SmiMI CAYNNNNRTG 2 cut(s) 180, 263
Sse9I AATT 2 cut(s) 64, 465
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 19, 391, 432
StyI CCWWGG 1 cut(s) 328
TaqI TCGA 2 cut(s) 159, 171
TasI AATT 2 cut(s) 64, 465
TatI WGTACW 1 cut(s) 560
TfiI GAWTC 6 cut(s) 313, 351, 412, 497, 527, 571
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 5, 407, 589
TspDTI ATGAA 3 cut(s) 204, 510, 534
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 73, 366
XagI CCTNNNNNAGG 1 cut(s) 18
XapI RAATTY 1 cut(s) 465
XmiI GTMKAC 2 cut(s) 129, 171
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.