Rorug02G0520400
NAC Family

NAC domain protein, IPR003441 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018468
Physical Location & Seq
Forward (+)
65237748 .. 65239326
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0520400.1

Sequence Viewer

Length: 1113 bp
ATGGCTCGTTGGTCCAAGAGCAATATTTCTCTCAATTGCTTGGCACATTCATTGAATCCGAAGTATTATAGTTCGGAATGGCTTAGTGAAGATACTAATCGGGTTGCTCCTCACAAACAATTAGAGATTACAAGGGAGAGGAAAAATTGTATCCTTAGATACTTTGCCAATGAAGATGATCGAAGGAAAGTTAACATAGAATTTGCCAATTTTTCTATGTGCATGCAAGAGTTTGGAAGTGGAGATGCTATGAAGGATATGTTTATTATGCAGCCTATAACATGGTGGGCTGTCCATGGAGCTTCGGCACCATCTCTCCAAGCCATAGCCTTCAAGGTTCTAGGTCAACCTTGTTCTTCTTCATGTTGTGAAAGAAATTGGAGTACTTACAATTTCATTCATTCTGTGAGGAGGAACAAGATAACACCACAAAGAGCGGAAGATTTGGTATTTGTGCATACCAATCTTCGCCTTTTAGCTAGAAGAAGCCCAAGTTACAATGAGAGTGCAACTCAAATGTGGGATGTTGGAGGTGATGACTTTGATTCTTTGGAAGAGACTAATGTTGGAAGGCTTGAGATTGCTAACCTTTCACTTGATGAACCACAATTAGAGGGGGTTTTGTTTAATGTTGATCATGAAGATGAAGACCTTGAGGATGTTGTCCAAATTTGCCGTTTCCACGTTTCCGATCGTATCGTATCCGGAAACTCGTACCCATTTTGGTGCTTCTTAGATAAATTCGGCAAAAATATCTTCTTTGTCACTGTTTCGAACAAGTATAGCTTAAATTCCATTGTAGAACAACTACATCGATCCAAGGGCTCTCGAGTTCCTACTTTCCAAAACGAAGTGGATGCAGTTCGGTGGTTGCAAACATTTTTGAAGGAAGAAGGAGAGAAACCTTCACTGTTGGTCTTGGATGATGTTTGGTCTGGATCAGAATCTCTTCTTGACAAATTTGAATGCAGAATGGCAAATATTAAGATTCTTGTGACATCAAGATATGAATTTCCCGCGTTCAGTCCTCTATATCGTTTAAACATGTTGGATAATGACGATGCAATGGAACTATTTCGTCATTCAGCATCATTGAATGATAAGATCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

370

Amino Acids

42.77

Weight (kDa)

5.39

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 90 - 156 6e-12 hAT family C-terminal dimerisation region
NB-ARC PF00931 252 - 363 1e-05 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46670 FvH4_6g47070
rosa_chinensis RchiOBHm_Chr2g0166121
rosa_laevigata RLG00000021587
rosa_rugosa Rorug02G0520400
rosa_samantha Rh2AG586500 Rh2BG598300 Rh2CG569000 Rh2DG608200
rosa_wichuraiana Rw2G048890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 437
AccII CGCG 1 cut(s) 1019
AccIII TCCGGA 1 cut(s) 704
AciI CCGC 2 cut(s) 437, 1017
AclWI GGATC 2 cut(s) 810, 946
AcsI RAATTY 6 cut(s) 200, 669, 740, 790, 959, 1010
AfaI GTAC 2 cut(s) 385, 716
AflIII ACRYGT 1 cut(s) 1044
AgsI TTSAA 5 cut(s) 55, 334, 886, 965, 1096
AluBI AGCT 3 cut(s) 302, 479, 786
AluI AGCT 3 cut(s) 302, 479, 786
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 2 cut(s) 810, 946
Ama87I CYCGRG 1 cut(s) 828
Aor13HI TCCGGA 1 cut(s) 704
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 6 cut(s) 200, 669, 740, 790, 959, 1010
Asp700I GAANNNNTTC 2 cut(s) 948, 1074
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 545
AsuII TTCGAA 1 cut(s) 773
AvaI CYCGRG 1 cut(s) 828
AvaII GGWCC 1 cut(s) 12
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 827
BbsI GAAGAC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 660
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciVI GTATCC 2 cut(s) 161, 712
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 2 cut(s) 341, 480
BfuI GTATCC 2 cut(s) 161, 712
BglII AGATCT 1 cut(s) 1104
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmcAI AGTACT 1 cut(s) 385
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 828
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 4 cut(s) 235, 847, 1051, 1097
BpiI GAAGAC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 496, 528
Bpu14I TTCGAA 1 cut(s) 773
BpuEI CTTGAG 2 cut(s) 596, 674
Bsa29I ATCGAT 1 cut(s) 814
BsaBI GATNNNNATC 2 cut(s) 96, 943
BsaJI CCNNGG 2 cut(s) 295, 819
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bse3DI GCAATG 1 cut(s) 1071
Bse8I GATNNNNATC 2 cut(s) 96, 943
BseAI TCCGGA 1 cut(s) 704
BseCI ATCGAT 1 cut(s) 814
BseDI CCNNGG 2 cut(s) 295, 819
BseGI GGATG 4 cut(s) 529, 664, 862, 928
BseJI GATNNNNATC 2 cut(s) 96, 943
BseMI GCAATG 1 cut(s) 1071
BseRI GAGGAG 2 cut(s) 99, 424
BseXI GCAGC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 1019
Bsh1285I CGRYCG 1 cut(s) 694
BshNI GGYRCC 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 814
BsiEI CGRYCG 1 cut(s) 694
BsiHKCI CYCGRG 1 cut(s) 828
BsiSI CCGG 1 cut(s) 705
BsmAI GTCTC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 971
BsoBI CYCGRG 1 cut(s) 828
Bsp119I TTCGAA 1 cut(s) 773
Bsp1286I GDGCHC 1 cut(s) 827
Bsp13I TCCGGA 1 cut(s) 704
Bsp143I GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 2 cut(s) 437, 1017
BspDI ATCGAT 1 cut(s) 814
BspEI TCCGGA 1 cut(s) 704
BspFNI CGCG 1 cut(s) 1019
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 810, 946
BspT104I TTCGAA 1 cut(s) 773
BspT107I GGYRCC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 1071
BssECI CCNNGG 2 cut(s) 295, 819
BssMI GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
BssT1I CCWWGG 2 cut(s) 295, 819
Bst4CI ACNGT 2 cut(s) 769, 912
Bst6I CTCTTC 2 cut(s) 549, 954
BstBI TTCGAA 1 cut(s) 773
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 4 cut(s) 83, 155, 733, 1110
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 4 cut(s) 529, 664, 862, 928
BstFNI CGCG 1 cut(s) 1019
BstKTI GATC 6 cut(s) 181, 637, 694, 818, 941, 1107
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
BstMCI CGRYCG 1 cut(s) 694
BstNSI RCATGY 2 cut(s) 226, 1048
BstUI CGCG 1 cut(s) 1019
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 1104
BstYI RGATCY 1 cut(s) 1104
Bsu15I ATCGAT 1 cut(s) 814
BsuI GTATCC 2 cut(s) 161, 712
BsuTUI ATCGAT 1 cut(s) 814
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 4 cut(s) 529, 664, 862, 928
BtsIMutI CAGTG 2 cut(s) 765, 908
Cac8I GCNNGC 1 cut(s) 224
CciI TCATGA 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 12
ClaI ATCGAT 1 cut(s) 814
Csp6I GTAC 2 cut(s) 384, 715
CviAII CATG 6 cut(s) 223, 282, 296, 363, 638, 1045
CviQI GTAC 2 cut(s) 384, 715
DdeI CTNAG 4 cut(s) 83, 155, 733, 1110
DpnI GATC 6 cut(s) 180, 636, 693, 817, 940, 1106
DpnII GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
DraI TTTAAA 1 cut(s) 1041
Eam1104I CTCTTC 2 cut(s) 549, 954
EarI CTCTTC 2 cut(s) 549, 954
Eco130I CCWWGG 2 cut(s) 295, 819
Eco24I GRGCYC 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 828
EcoT14I CCWWGG 2 cut(s) 295, 819
EcoT38I GRGCYC 1 cut(s) 827
ErhI CCWWGG 2 cut(s) 295, 819
FaeI CATG 6 cut(s) 226, 285, 299, 366, 641, 1048
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FatI CATG 6 cut(s) 222, 281, 295, 362, 637, 1044
FauI CCCGC 1 cut(s) 1024
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 4 cut(s) 536, 671, 869, 935
FriOI GRGCYC 1 cut(s) 827
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 2 cut(s) 341, 480
GluI GCNGC 1 cut(s) 272
HapII CCGG 1 cut(s) 705
Hin1II CATG 6 cut(s) 226, 285, 299, 366, 641, 1048
HincII GTYRAC 2 cut(s) 193, 347
HindII GTYRAC 2 cut(s) 193, 347
HinfI GANTC 4 cut(s) 55, 545, 944, 988
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 1 cut(s) 705
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 2 cut(s) 193, 347
Hpy188I TCNGA 4 cut(s) 60, 76, 691, 943
Hpy188III TCNNGA 6 cut(s) 638, 705, 828, 936, 953, 1002
Hpy8I GTNNAC 2 cut(s) 193, 347
HpyAV CCTTC 7 cut(s) 177, 247, 340, 564, 880, 887, 915
HpyCH4III ACNGT 2 cut(s) 769, 912
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 9 cut(s) 222, 226, 271, 457, 509, 860, 874, 969, 1064
HpyF3I CTNAG 4 cut(s) 83, 155, 733, 1110
HpySE526I ACGT 1 cut(s) 684
Hsp92II CATG 6 cut(s) 226, 285, 299, 366, 641, 1048
Kpn2I TCCGGA 1 cut(s) 704
Ksp22I TGATCA 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
LmnI GCTCC 2 cut(s) 112, 299
LpnPI CCDG 2 cut(s) 718, 921
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 4 cut(s) 235, 847, 1051, 1097
MaeI CTAG 2 cut(s) 341, 480
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 3 cut(s) 494, 763, 994
MalI GATC 6 cut(s) 180, 636, 693, 817, 940, 1106
MbiI CCGCTC 1 cut(s) 437
MboI GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
MfeI CAATTG 1 cut(s) 34
MflI RGATCY 1 cut(s) 1104
MhlI GDGCHC 1 cut(s) 827
MmeI TCCRAC 3 cut(s) 508, 547, 1029
MnlI CCTC 8 cut(s) 120, 132, 402, 405, 524, 607, 649, 1038
MroI TCCGGA 1 cut(s) 704
MroXI GAANNNNTTC 2 cut(s) 948, 1074
MseI TTAA 5 cut(s) 192, 627, 788, 984, 1040
MslI CAYNNNNRTG 2 cut(s) 642, 724
MspI CCGG 1 cut(s) 705
MssI GTTTAAAC 1 cut(s) 1041
MunI CAATTG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 971
MvnI CGCG 1 cut(s) 1019
NcoI CCATGG 1 cut(s) 295
NdeII GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
NlaIII CATG 6 cut(s) 226, 285, 299, 366, 641, 1048
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 2 cut(s) 763, 994
NspI RCATGY 2 cut(s) 226, 1048
NspV TTCGAA 1 cut(s) 773
PaeI GCATGC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 828
PagI TCATGA 1 cut(s) 637
PciI ACATGT 1 cut(s) 1044
PctI GAATGC 1 cut(s) 971
PdmI GAANNNNTTC 2 cut(s) 948, 1074
PfeI GAWTC 4 cut(s) 55, 545, 944, 988
PkrI GCNGC 1 cut(s) 273
Ple19I CGATCG 1 cut(s) 694
PmeI GTTTAAAC 1 cut(s) 1041
PscI ACATGT 1 cut(s) 1044
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 1104
PvuI CGATCG 1 cut(s) 694
RsaI GTAC 2 cut(s) 385, 716
RsaNI GTAC 2 cut(s) 384, 715
RseI CAYNNNNRTG 2 cut(s) 642, 724
SaqAI TTAA 5 cut(s) 192, 627, 788, 984, 1040
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 6 cut(s) 178, 634, 691, 815, 938, 1104
Sau96I GGNCC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 385
SduI GDGCHC 1 cut(s) 827
SfaNI GCATC 4 cut(s) 235, 847, 1051, 1097
Sfr274I CTCGAG 1 cut(s) 828
SfuI TTCGAA 1 cut(s) 773
SinI GGWCC 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 828
SmiMI CAYNNNNRTG 2 cut(s) 642, 724
SmlI CTYRAG 3 cut(s) 575, 653, 828
SmoI CTYRAG 3 cut(s) 575, 653, 828
SphI GCATGC 1 cut(s) 226
SsiI CCGC 2 cut(s) 437, 1017
SspI AATATT 2 cut(s) 25, 982
SspMI CTAG 2 cut(s) 341, 480
StyI CCWWGG 2 cut(s) 295, 819
TaaI ACNGT 2 cut(s) 769, 912
TaiI ACGT 1 cut(s) 687
TaqI TCGA 4 cut(s) 181, 773, 814, 829
TatI WGTACW 1 cut(s) 383
TfiI GAWTC 4 cut(s) 55, 545, 944, 988
Tru1I TTAA 5 cut(s) 192, 627, 788, 984, 1040
Tru9I TTAA 5 cut(s) 192, 627, 788, 984, 1040
TscAI CASTG 2 cut(s) 772, 915
TseFI GTSAC 2 cut(s) 763, 994
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 763, 994
TspRI CASTG 2 cut(s) 772, 915
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 6 cut(s) 200, 669, 740, 790, 959, 1010
XceI RCATGY 2 cut(s) 226, 1048
XhoI CTCGAG 1 cut(s) 828
XmnI GAANNNNTTC 2 cut(s) 948, 1074
XspI CTAG 2 cut(s) 341, 480
ZrmI AGTACT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.