FvH4_6g47070
NAC Family

NAC domain protein, IPR003441 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018468
Physical Location & Seq
Forward (+)
35770540 .. 35772792
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47070.t1

Sequence Viewer

Length: 582 bp
ATGGCTGCTCCTCCTGTTCCAGGTCTCAGGTTTCAGCCCAGTGATGAAGAGATTGTTAGGGTTTACTTGATCCCCAAGATACTGGGTAGGCTGAACCCTTATGACGTAGTCACCACCGAAGATGTCTACTCCACCAGCCCTGAGCAACTTCCACTCGGTAATGATGCTGGACACTTCATAGACAATGAATGGTACTTCTACACAACTAGGCCAATCAGCAGCCATTATAGAACAAGAAATGGCTTCTACTTTGCCACCTCTATGAATGAGCCAATCTTACATAACAATAACGTGGTTGGTTTCAGAAGGTTTCTGAGGTTTTACCTTGGTAGCAGGCCAGAAACAGGAATCGAAACTGAATGGACTGTCCATGAGTTTCGAGCTAACCCTGCTGTATTTCCAGCAGCGAATCTACTTGGTAGTGTTGTTCAGGAGAAGCTATCCAGTATGGTAATGTGCAAAATTGTTCGTATACAAGAACTTTCTGACAATTCATCGGAGGAAGGAGTCAAGGATGAAAGCGGTTCTTCTAGGATTAATCTGCTGCAGAATACAAGACTGAATCTACAAAGTAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

194

Amino Acids

21.95

Weight (kDa)

5.59

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 127 2.7e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46670 FvH4_6g47070
rosa_chinensis RchiOBHm_Chr2g0166121
rosa_laevigata RLG00000021587
rosa_rugosa Rorug02G0520400
rosa_samantha Rh2AG586500 Rh2BG598300 Rh2CG569000 Rh2DG608200
rosa_wichuraiana Rw2G048890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 126, 472
AciI CCGC 1 cut(s) 522
AclWI GGATC 1 cut(s) 64
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 20, 344
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 2 cut(s) 383, 439
AluI AGCT 2 cut(s) 383, 439
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 64
AoxI GGCC 2 cut(s) 209, 335
ApeKI GCWGC 4 cut(s) 5, 219, 404, 544
AseI ATTAAT 1 cut(s) 537
AsuHPI GGTGA 1 cut(s) 103
BbvI GCAGC 3 cut(s) 231, 416, 531
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 207, 531
BfmI CTRYAG 1 cut(s) 545
BisI GCNGC 4 cut(s) 6, 220, 405, 545
BlsI GCNGC 4 cut(s) 7, 221, 406, 546
Bme1390I CCNGG 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 21
BmrI ACTGGG 2 cut(s) 33, 92
BmsI GCATC 1 cut(s) 154
BmuI ACTGGG 2 cut(s) 33, 92
Bpu10I CCTNAGC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 325
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 344
Bse1I ACTGG 3 cut(s) 39, 87, 444
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 2 cut(s) 20, 344
BseMII CTCAG 3 cut(s) 40, 132, 305
BseNI ACTGG 3 cut(s) 39, 87, 444
BseXI GCAGC 3 cut(s) 231, 416, 531
BshFI GGCC 2 cut(s) 211, 337
BslI CCNNNNNNNGG 2 cut(s) 20, 344
BsmAI GTCTC 1 cut(s) 29
BsnI GGCC 2 cut(s) 211, 337
Bso31I GGTCTC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 1 cut(s) 522
BspANI GGCC 2 cut(s) 211, 337
BspCNI CTCAG 3 cut(s) 39, 133, 306
BspMAI CTGCAG 1 cut(s) 549
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 29
BsrI ACTGG 3 cut(s) 39, 87, 444
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 1 cut(s) 69
BssNAI GTATAC 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 325
Bst1107I GTATAC 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 3 cut(s) 26, 141, 314
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 520
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 545
BstV1I GCAGC 3 cut(s) 231, 416, 531
BstXI CCANNNNNNTGG 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 473
BsuRI GGCC 2 cut(s) 211, 337
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 371
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 3 cut(s) 26, 141, 314
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 29
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 1 cut(s) 374
FaiI YATR 8 cut(s) 102, 179, 228, 263, 282, 372, 449, 473
FalI AAGNNNNNCTT 2 cut(s) 511, 543
FatI CATG 1 cut(s) 370
FblI GTMKAC 2 cut(s) 126, 472
Fnu4HI GCNGC 4 cut(s) 6, 220, 405, 545
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 4 cut(s) 6, 220, 405, 545
FspBI CTAG 2 cut(s) 207, 531
GluI GCNGC 4 cut(s) 6, 220, 405, 545
HaeIII GGCC 2 cut(s) 211, 337
Hin1II CATG 1 cut(s) 374
HinfI GANTC 4 cut(s) 348, 409, 507, 562
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 3 cut(s) 64, 127, 473
Hpy188I TCNGA 4 cut(s) 305, 315, 487, 499
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 3 cut(s) 64, 127, 473
HpyAV CCTTC 2 cut(s) 300, 497
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 105, 291
HpyCH4V TGCA 2 cut(s) 459, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 3 cut(s) 26, 141, 314
HpySE526I ACGT 2 cut(s) 105, 291
Hsp92II CATG 1 cut(s) 374
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 3 cut(s) 231, 416, 531
LweI GCATC 1 cut(s) 154
MaeI CTAG 2 cut(s) 207, 531
MaeII ACGT 2 cut(s) 105, 291
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 3 cut(s) 59, 131, 519
MluCI AATT 2 cut(s) 462, 490
MlyI GAGTC 1 cut(s) 516
MnlI CCTC 4 cut(s) 21, 268, 309, 493
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 109
PfeI GAWTC 3 cut(s) 348, 409, 562
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 4 cut(s) 7, 221, 406, 546
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PstI CTGCAG 1 cut(s) 549
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 4 cut(s) 6, 220, 405, 545
Sau3AI GATC 1 cut(s) 69
SchI GAGTC 1 cut(s) 516
ScrFI CCNGG 1 cut(s) 21
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 2 cut(s) 462, 490
SsiI CCGC 1 cut(s) 522
SspMI CTAG 2 cut(s) 207, 531
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 108, 294
TaqI TCGA 2 cut(s) 351, 379
TasI AATT 2 cut(s) 462, 490
TfiI GAWTC 3 cut(s) 348, 409, 562
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 4 cut(s) 5, 219, 404, 544
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 6 cut(s) 60, 166, 201, 278, 483, 531
TspRI CASTG 1 cut(s) 46
Tth111I GACNNNGTC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 537
XagI CCTNNNNNAGG 1 cut(s) 18
XmiI GTMKAC 2 cut(s) 126, 472
XspI CTAG 2 cut(s) 207, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.