RchiOBHm_Chr2g0166121
NAC Family

NAC domain protein, IPR003441 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018468
Physical Location & Seq
Forward (+)
80876368 .. 80877877
1510 bp
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UTR
Exon/CDS
Intron
PRQ53404

Sequence Viewer

Length: 453 bp
ATGCCTTCTACTTGTCCTTGTCCACCTCCTGGTTTCAGGTTTCAGCCCTCTGATGCTGAGATTATTGGGTTTTACTTGATCAACAAGATACTGGGCAGACCGAATGCTTTTGATGTCATCAGCACCGTTGATGTCTACTCCAACAGCCCTGATCAGCTTCCACTCGGTAATGCTGGGCACTTTGAAGAGAATGAATGGTATTTCTACACAACTAGGCCAAACAGCAGCCATTTTCTAACGAAAGATGGCTACTTTGCCACTTCTATGGATGAGCAAATCTTTCATAACAATCAAGTGGTTGGTTTCAAGCAGATTCTGAGATTTTACCTTGGTAGACCACCAACAGGGATGAAAACCAATTGGGTCGTCCATGAATTTCGTGTTAACCCTAATATATTTCCAGCTGGGAAACTTGATAATGTTCTTCAGGTGAAGGTAATTACTTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

150

Amino Acids

17.19

Weight (kDa)

6.4

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 128 1.8e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018468)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46670 FvH4_6g47070
rosa_chinensis RchiOBHm_Chr2g0166121
rosa_laevigata RLG00000021587
rosa_rugosa Rorug02G0520400
rosa_samantha Rh2AG586500 Rh2BG598300 Rh2CG569000 Rh2DG608200
rosa_wichuraiana Rw2G048890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AccI GTMKAC 2 cut(s) 135, 334
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 29, 344
AgsI TTSAA 2 cut(s) 185, 307
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 157, 404
AluI AGCT 2 cut(s) 157, 404
AlwNI CAGNNNCTG 1 cut(s) 316
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 2 cut(s) 78, 151
BfaI CTAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 344
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 2 cut(s) 274, 354
BseLI CCNNNNNNNGG 2 cut(s) 29, 344
BseMII CTCAG 2 cut(s) 48, 308
BseNI ACTGG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 2 cut(s) 173, 404
BshFI GGCC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 29, 344
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 78, 151
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 2 cut(s) 49, 309
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 78, 151
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 57, 317
BstF5I GGATG 2 cut(s) 274, 354
BstKTI GATC 2 cut(s) 81, 154
BstMBI GATC 2 cut(s) 78, 151
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 265
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 274, 354
CaiI CAGNNNCTG 1 cut(s) 316
CviAII CATG 1 cut(s) 371
CviJI RGCY 7 cut(s) 46, 147, 157, 217, 228, 249, 404
CviKI_1 RGCY 7 cut(s) 46, 147, 157, 217, 228, 249, 404
DdeI CTNAG 2 cut(s) 57, 317
DpnI GATC 2 cut(s) 80, 153
DpnII GATC 2 cut(s) 78, 151
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 374
FaiI YATR 4 cut(s) 266, 285, 372, 395
FatI CATG 1 cut(s) 370
FbaI TGATCA 2 cut(s) 78, 151
FblI GTMKAC 2 cut(s) 135, 334
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 2 cut(s) 281, 361
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 226
GsaI CCCAGC 2 cut(s) 177, 408
HaeIII GGCC 1 cut(s) 217
Hin1II CATG 1 cut(s) 374
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 1 cut(s) 313
HpaI GTTAAC 1 cut(s) 385
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 4 cut(s) 23, 136, 335, 385
Hpy188I TCNGA 2 cut(s) 52, 318
Hpy8I GTNNAC 4 cut(s) 23, 136, 335, 385
HpyAV CCTTC 2 cut(s) 15, 427
HpyCH4III ACNGT 1 cut(s) 127
HpyF3I CTNAG 2 cut(s) 57, 317
Hsp92II CATG 1 cut(s) 374
Ksp22I TGATCA 2 cut(s) 78, 151
KspAI GTTAAC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 78, 151
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 213
MalI GATC 2 cut(s) 80, 153
MboI GATC 2 cut(s) 78, 151
MboII GAAGA 2 cut(s) 197, 416
MfeI CAATTG 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 3 cut(s) 358, 374, 438
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 36, 58
MseI TTAA 2 cut(s) 384, 451
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 30
MunI CAATTG 1 cut(s) 358
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 30
NdeII GATC 2 cut(s) 78, 151
NlaIII CATG 1 cut(s) 374
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 313
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 28
PspFI CCCAGC 2 cut(s) 173, 404
PspGI CCWGG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 384, 451
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 78, 151
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 28, 41, 159, 330, 406, 432, 438
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 3 cut(s) 358, 374, 438
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 127
TaqII GACCGA 1 cut(s) 115
TasI AATT 3 cut(s) 358, 374, 438
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 2 cut(s) 384, 451
Tru9I TTAA 2 cut(s) 384, 451
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 4 cut(s) 207, 272, 365, 387
Van91I CCANNNNNTGG 1 cut(s) 29
XapI RAATTY 1 cut(s) 374
XmiI GTMKAC 2 cut(s) 135, 334
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.