FvH4_6g47510

Domain of unknown function (DUF4336)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
35969411 .. 35972455
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47510.t1

Sequence Viewer

Length: 1362 bp
ATGGCAGCCATTACTATTTCTTCACCAAAATCCACCATTTTGCAAAACCATATCTCTCACAGAGAACCCAGTTCTAGCTTTCTTGGTGGTTCCTTTAAGGGTCTTTGTTTGCAATTCAAACCCAGAAACAAGAAAAAAGATGCCACCAATTTGGTGGTTGCTTCAGCAAAACTCACCACCAAAGAAAGCATCAGTAGCACTAGGTCAGGAGGTGACCGGTTTTACATAAACTTCACTGGTTTTCCTTTTCCTCTGGGACCTTTTCTCAATAGGAGCACTACTAGGACTGAGGCTGTGAAAGGTTCCATATGGTTATTTGAGCAAGAGCAAGCATTAGGCTTCAGCAGTGTGTCAACGAACATTAGAATGACAGTAGTGAAACTTAAATCTGGAGGATTATGGGTCCATGCACCCATTGCTCCAACCAAGGAGTGTATTCAGCTTCTGAAGGAGTTGGGGGCACCTGTAGAATACATAGTGCTGCCTACATTTGCTTATGAGCACAAAATATTTGTTGGTCCATTTTCTAGAGCGTTCCCTCGAGCTCAGGTATGGGTGGCACCAAGGCAGTGGAGTTGGCCTTTGAATCTGCCACTGGAGTTTTTTGGGATCTTTCGTGCTAAAACCTTACAAGATGAAGATTTGTCCACACCATGGGCTAATGAGATTGAGCAGAAAGTTCTAAGTTCTCCAGAAGTCGGTATTGGACCCTATGTGGAGGTAGCTTTCTATCATAAGCCTTCGAGAACTCTACTGGTGACAGATGCTGTAATTTTTGTGCCACGGCAGCCACCTGATTGTATTAGCAAGGAATCGTTGCTGGCATCTGCAAAGAATGGTTTGGCTGTGAAAATTCTAAGTAAAGGAAAAGAGGTATCAGATGAACCAGTCATAGACAACAAGATGAACCGTCAAAAAGGATGGGAAAGAATGGTTTTGCAAATTTTGTTTCTTGGTCCATCAAACCTGTTGGAACCTAAAGCTAGCTTCTCACAGATGTCACAAAAGCTGATTGTTTCACCCATTGTGAAGACTCTTGTCTTCAGCAAGGTTCCGGAAAAGGTCAGGGATTGGATTGACAGAATTTCACGGGACTGGAGGTTCAGGAGGATAATCCCTGCTCATTTTGCTGCACCAGTTAATGCAAGCAGGTCTGACTTCCTAGCTGCATTTGCCTTTTTGGATGATCTGTTGGATGAACGTTATGCCACTCGGCCTTCACTCTCTTCTCTCTTCACATCCCTAATGGGAAAGGCGGCTAGTTACTTTCCTCCCGATGACATGAAAACTTTATCATCTCTCGATCAGTTTTTGGTCTCAGTGGGAGCTGTGAAGAAGACTGTCTCAGGTCGGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

50.61

Weight (kDa)

9.82

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4336 PF14234 100 - 323 1.2e-84 Domain of unknown function (DUF4336)
DUF4336 PF14234 327 - 393 4.7e-19 Domain of unknown function (DUF4336)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01060 AT3G01060
fragaria_vesca FvH4_6g47510
malus_domestica MD17G1056600.v1.1
prunus_persica Prupe.3G258900_v2.0.a1
pyrus_communis pycom17g05560
rosa_chinensis RchiOBHm_Chr2g0166541
rosa_laevigata RLG00000021628
rosa_multiflora Rmu_sc0010842.1_g000007
rosa_roxburghii Rroxscaffold_2G00084760
rosa_rugosa Rorug02G0524100
rosa_samantha Rh2AG590000 Rh2BG602100 Rh2CG572800 Rh2DG612700
rosa_wichuraiana Rw2G049180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1140
AccB1I GGYRCC 2 cut(s) 460, 559
AccB7I CCANNNNNTGG 1 cut(s) 654
AccIII TCCGGA 1 cut(s) 1054
AciI CCGC 1 cut(s) 1256
AclI AACGTT 1 cut(s) 1201
AclWI GGATC 1 cut(s) 617
AcsI RAATTY 3 cut(s) 852, 942, 1083
AcuI CTGAAG 4 cut(s) 147, 325, 467, 1027
AfiI CCNNNNNNNGG 2 cut(s) 654, 698
AgeI ACCGGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 118, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 687, 719
AloI GAACNNNNNNTCC 2 cut(s) 1085, 1117
AluBI AGCT 9 cut(s) 78, 442, 545, 725, 983, 987, 1009, 1166, 1328
AluI AGCT 9 cut(s) 78, 442, 545, 725, 983, 987, 1009, 1166, 1328
Alw21I GWGCWC 3 cut(s) 278, 504, 547
Alw26I GTCTC 2 cut(s) 1321, 1348
AlwI GGATC 1 cut(s) 617
AlwNI CAGNNNCTG 2 cut(s) 445, 767
Ama87I CYCGRG 1 cut(s) 540
Aor13HI TCCGGA 1 cut(s) 1054
AoxI GGCC 2 cut(s) 578, 1214
ApeKI GCWGC 5 cut(s) 5, 481, 787, 1130, 1166
ApoI RAATTY 3 cut(s) 852, 942, 1083
AsiGI ACCGGT 1 cut(s) 216
AspS9I GGNCC 5 cut(s) 257, 403, 518, 707, 956
AsuHPI GGTGA 5 cut(s) 15, 166, 224, 769, 1011
AsuNHI GCTAGC 1 cut(s) 983
AvaI CYCGRG 1 cut(s) 540
AvaII GGWCC 5 cut(s) 257, 403, 518, 707, 956
BaeGI GKGCMC 1 cut(s) 463
BanI GGYRCC 2 cut(s) 460, 559
BanII GRGCYC 1 cut(s) 547
BbsI GAAGAC 3 cut(s) 1033, 1037, 1343
Bbv12I GWGCWC 3 cut(s) 278, 504, 547
BbvI GCAGC 5 cut(s) 17, 468, 799, 1117, 1153
BccI CCATC 2 cut(s) 915, 967
BceAI ACGGC 1 cut(s) 800
BcoDI GTCTC 2 cut(s) 1321, 1348
BfaI CTAG 7 cut(s) 75, 201, 282, 528, 984, 1163, 1260
BfmI CTRYAG 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 1140
BisI GCNGC 6 cut(s) 6, 482, 788, 1131, 1167, 1257
BlsI GCNGC 6 cut(s) 7, 483, 789, 1132, 1168, 1258
Bme18I GGWCC 5 cut(s) 257, 403, 518, 707, 956
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 5 cut(s) 257, 403, 518, 707, 956
BmiI GGNNCC 9 cut(s) 91, 258, 304, 404, 462, 561, 709, 975, 1053
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 4 cut(s) 130, 198, 754, 833
BmtI GCTAGC 1 cut(s) 987
BmuI ACTGGG 1 cut(s) 63
BoxI GACNNNNGTC 1 cut(s) 1037
BpiI GAAGAC 3 cut(s) 1033, 1037, 1343
BpmI CTGGAG 4 cut(s) 411, 617, 675, 1117
Bpu10I CCTNAGC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 1321
BsaJI CCNNGG 4 cut(s) 426, 563, 653, 782
BsaWI WCCGGW 2 cut(s) 216, 1054
Bsc4I CCNNNNNNNGG 2 cut(s) 654, 698
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 7 cut(s) 69, 241, 600, 759, 887, 1100, 1136
Bse3DI GCAATG 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 1054
BseDI CCNNGG 4 cut(s) 426, 563, 653, 782
BseGI GGATG 4 cut(s) 926, 1189, 1201, 1238
BseLI CCNNNNNNNGG 2 cut(s) 654, 698
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 4 cut(s) 279, 560, 1332, 1359
BseNI ACTGG 7 cut(s) 69, 241, 600, 759, 887, 1100, 1136
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 5 cut(s) 17, 468, 799, 1117, 1153
BsgI GTGCAG 1 cut(s) 1116
BshFI GGCC 2 cut(s) 580, 1216
BshNI GGYRCC 2 cut(s) 460, 559
BshTI ACCGGT 1 cut(s) 216
BsiHKAI GWGCWC 3 cut(s) 278, 504, 547
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 2 cut(s) 217, 1055
BslFI GGGAC 2 cut(s) 270, 1106
BslI CCNNNNNNNGG 2 cut(s) 654, 698
BsmAI GTCTC 2 cut(s) 1321, 1348
BsmFI GGGAC 2 cut(s) 270, 1106
BsnI GGCC 2 cut(s) 580, 1216
Bso31I GGTCTC 1 cut(s) 1321
BsoBI CYCGRG 1 cut(s) 540
Bsp1286I GDGCHC 4 cut(s) 278, 463, 504, 547
Bsp13I TCCGGA 1 cut(s) 1054
Bsp143I GATC 3 cut(s) 609, 1186, 1303
Bsp19I CCATGG 1 cut(s) 653
BspACI CCGC 1 cut(s) 1256
BspANI GGCC 2 cut(s) 580, 1216
BspCNI CTCAG 4 cut(s) 280, 559, 1331, 1358
BspEI TCCGGA 1 cut(s) 1054
BspLI GGNNCC 9 cut(s) 91, 258, 304, 404, 462, 561, 709, 975, 1053
BspMI ACCTGC 1 cut(s) 1140
BspOI GCTAGC 1 cut(s) 987
BspPI GGATC 1 cut(s) 617
BspT107I GGYRCC 2 cut(s) 460, 559
BspTNI GGTCTC 1 cut(s) 1321
BsrDI GCAATG 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 7 cut(s) 69, 241, 600, 759, 887, 1100, 1136
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 4 cut(s) 426, 563, 653, 782
BssMI GATC 3 cut(s) 609, 1186, 1303
BssT1I CCWWGG 3 cut(s) 426, 563, 653
Bst4CI ACNGT 3 cut(s) 373, 911, 1342
Bst6I CTCTTC 2 cut(s) 1231, 1238
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 4 cut(s) 330, 822, 985, 1147
BstDEI CTNAG 6 cut(s) 288, 546, 683, 857, 1318, 1345
BstDSI CCRYGG 2 cut(s) 653, 782
BstEII GGTNACC 1 cut(s) 212
BstF5I GGATG 4 cut(s) 926, 1189, 1201, 1238
BstKTI GATC 3 cut(s) 612, 1189, 1306
BstMAI GTCTC 2 cut(s) 1321, 1348
BstMBI GATC 3 cut(s) 609, 1186, 1303
BstMWI GCNNNNNNNGC 5 cut(s) 195, 416, 787, 1127, 1172
BstPAI GACNNNNGTC 1 cut(s) 1037
BstPI GGTNACC 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 463
BstV1I GCAGC 5 cut(s) 17, 468, 799, 1117, 1153
BstV2I GAAGAC 3 cut(s) 1033, 1037, 1343
BstX2I RGATCY 1 cut(s) 609
BstXI CCANNNNNNTGG 3 cut(s) 151, 154, 570
BstYI RGATCY 1 cut(s) 609
BsuRI GGCC 2 cut(s) 580, 1216
BtgI CCRYGG 2 cut(s) 653, 782
BtsCI GGATG 4 cut(s) 926, 1189, 1201, 1238
BtsI GCAGTG 2 cut(s) 352, 575
BtsIMutI CAGTG 5 cut(s) 234, 352, 575, 593, 1326
BveI ACCTGC 1 cut(s) 1140
Cac8I GCNNGC 4 cut(s) 330, 822, 985, 1147
CaiI CAGNNNCTG 2 cut(s) 445, 767
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 5 cut(s) 257, 403, 518, 707, 956
CspAI ACCGGT 1 cut(s) 216
CviAII CATG 3 cut(s) 407, 654, 1282
DdeI CTNAG 6 cut(s) 288, 546, 683, 857, 1318, 1345
DpnI GATC 3 cut(s) 611, 1188, 1305
DpnII GATC 3 cut(s) 609, 1186, 1303
Eam1104I CTCTTC 2 cut(s) 1231, 1238
EarI CTCTTC 2 cut(s) 1231, 1238
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 3 cut(s) 426, 563, 653
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 1321
Eco47I GGWCC 5 cut(s) 257, 403, 518, 707, 956
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 4 cut(s) 147, 325, 467, 1027
Eco88I CYCGRG 1 cut(s) 540
Eco91I GGTNACC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 545
EcoO109I RGGNCCY 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 212
EcoT14I CCWWGG 3 cut(s) 426, 563, 653
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 3 cut(s) 426, 563, 653
FaeI CATG 3 cut(s) 410, 657, 1285
FaqI GGGAC 2 cut(s) 270, 1106
FatI CATG 3 cut(s) 406, 653, 1281
FauNDI CATATG 1 cut(s) 308
Fnu4HI GCNGC 6 cut(s) 6, 482, 788, 1131, 1167, 1257
FokI GGATG 4 cut(s) 933, 1196, 1208, 1225
FriOI GRGCYC 1 cut(s) 547
Fsp4HI GCNGC 6 cut(s) 6, 482, 788, 1131, 1167, 1257
FspBI CTAG 7 cut(s) 75, 201, 282, 528, 984, 1163, 1260
GluI GCNGC 6 cut(s) 6, 482, 788, 1131, 1167, 1257
GsuI CTGGAG 4 cut(s) 411, 617, 675, 1117
HaeIII GGCC 2 cut(s) 580, 1216
HapII CCGG 2 cut(s) 217, 1055
Hin1II CATG 3 cut(s) 410, 657, 1285
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 3 cut(s) 586, 812, 1033
HpaII CCGG 2 cut(s) 217, 1055
HphI GGTGA 5 cut(s) 15, 166, 224, 769, 1011
Hpy166II GTNNAC 2 cut(s) 354, 648
Hpy188I TCNGA 4 cut(s) 447, 880, 1156, 1353
Hpy188III TCNNGA 9 cut(s) 207, 390, 528, 692, 744, 1055, 1105, 1274, 1301
Hpy8I GTNNAC 2 cut(s) 354, 648
HpyAV CCTTC 3 cut(s) 442, 750, 1227
HpyCH4III ACNGT 3 cut(s) 373, 911, 1342
HpyCH4IV ACGT 1 cut(s) 1201
HpyCH4V TGCA 8 cut(s) 43, 112, 410, 830, 940, 1133, 1145, 1169
HpyF10VI GCNNNNNNNGC 5 cut(s) 195, 416, 787, 1127, 1172
HpyF3I CTNAG 6 cut(s) 288, 546, 683, 857, 1318, 1345
HpySE526I ACGT 1 cut(s) 1201
Hsp92II CATG 3 cut(s) 410, 657, 1285
Kpn2I TCCGGA 1 cut(s) 1054
Kzo9I GATC 3 cut(s) 609, 1186, 1303
LmnI GCTCC 3 cut(s) 273, 424, 1325
Lsp1109I GCAGC 5 cut(s) 17, 468, 799, 1117, 1153
LweI GCATC 4 cut(s) 130, 198, 754, 833
MaeI CTAG 7 cut(s) 75, 201, 282, 528, 984, 1163, 1260
MaeII ACGT 1 cut(s) 1201
MaeIII GTNAC 4 cut(s) 212, 757, 999, 1262
MalI GATC 3 cut(s) 611, 1188, 1305
MboI GATC 3 cut(s) 609, 1186, 1303
MboII GAAGA 8 cut(s) 12, 650, 1033, 1042, 1218, 1225, 1345, 1348
MflI RGATCY 1 cut(s) 609
MhlI GDGCHC 4 cut(s) 278, 463, 504, 547
MluCI AATT 6 cut(s) 113, 148, 771, 852, 942, 1083
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 4 cut(s) 446, 951, 1173, 1331
MroI TCCGGA 1 cut(s) 1054
MseI TTAA 3 cut(s) 96, 384, 1140
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 2 cut(s) 217, 1055
MwoI GCNNNNNNNGC 5 cut(s) 195, 416, 787, 1127, 1172
NcoI CCATGG 1 cut(s) 653
NdeI CATATG 1 cut(s) 308
NdeII GATC 3 cut(s) 609, 1186, 1303
NheI GCTAGC 1 cut(s) 983
NlaIII CATG 3 cut(s) 410, 657, 1285
NlaIV GGNNCC 9 cut(s) 91, 258, 304, 404, 462, 561, 709, 975, 1053
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 3 cut(s) 212, 757, 999
PaeR7I CTCGAG 1 cut(s) 540
PfeI GAWTC 2 cut(s) 586, 812
PflMI CCANNNNNTGG 1 cut(s) 654
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 6 cut(s) 7, 483, 789, 1132, 1168, 1258
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
PpuMI RGGWCCY 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 1037
Psp124BI GAGCTC 1 cut(s) 547
Psp1406I AACGTT 1 cut(s) 1201
Psp5II RGGWCCY 1 cut(s) 257
PspEI GGTNACC 1 cut(s) 212
PspN4I GGNNCC 9 cut(s) 91, 258, 304, 404, 462, 561, 709, 975, 1053
PspPI GGNCC 5 cut(s) 257, 403, 518, 707, 956
PspPPI RGGWCCY 1 cut(s) 257
PspXI VCTCGAGB 1 cut(s) 540
PstNI CAGNNNCTG 2 cut(s) 445, 767
PsuI RGATCY 1 cut(s) 609
RseI CAYNNNNRTG 1 cut(s) 365
SacI GAGCTC 1 cut(s) 547
SaqAI TTAA 3 cut(s) 96, 384, 1140
SatI GCNGC 6 cut(s) 6, 482, 788, 1131, 1167, 1257
Sau3AI GATC 3 cut(s) 609, 1186, 1303
Sau96I GGNCC 5 cut(s) 257, 403, 518, 707, 956
SchI GAGTC 1 cut(s) 1027
SduI GDGCHC 4 cut(s) 278, 463, 504, 547
SfaNI GCATC 4 cut(s) 130, 198, 754, 833
SfcI CTRYAG 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 540
SinI GGWCC 5 cut(s) 257, 403, 518, 707, 956
SlaI CTCGAG 1 cut(s) 540
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
Sse9I AATT 6 cut(s) 113, 148, 771, 852, 942, 1083
SsiI CCGC 1 cut(s) 1256
SspI AATATT 1 cut(s) 510
SspMI CTAG 7 cut(s) 75, 201, 282, 528, 984, 1163, 1260
SstI GAGCTC 1 cut(s) 547
StyI CCWWGG 3 cut(s) 426, 563, 653
TaaI ACNGT 3 cut(s) 373, 911, 1342
TaiI ACGT 1 cut(s) 1204
TaqI TCGA 3 cut(s) 541, 743, 1302
TasI AATT 6 cut(s) 113, 148, 771, 852, 942, 1083
TauI GCSGC 1 cut(s) 1259
TfiI GAWTC 2 cut(s) 586, 812
Tru1I TTAA 3 cut(s) 96, 384, 1140
Tru9I TTAA 3 cut(s) 96, 384, 1140
TscAI CASTG 5 cut(s) 241, 352, 575, 600, 1326
TseFI GTSAC 3 cut(s) 212, 757, 999
TseI GCWGC 5 cut(s) 5, 481, 787, 1130, 1166
Tsp45I GTSAC 3 cut(s) 212, 757, 999
TspDTI ATGAA 5 cut(s) 651, 897, 920, 1212, 1298
TspRI CASTG 5 cut(s) 241, 352, 575, 600, 1326
Van91I CCANNNNNTGG 1 cut(s) 654
VpaK11BI GGWCC 5 cut(s) 257, 403, 518, 707, 956
XapI RAATTY 3 cut(s) 852, 942, 1083
XbaI TCTAGA 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 540
XspI CTAG 7 cut(s) 75, 201, 282, 528, 984, 1163, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.