FvH4_6g53760

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014782
Physical Location & Seq
Reverse (-)
39353281 .. 39356291
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53760.t1

Sequence Viewer

Length: 1143 bp
ATGGAGTGGGACTACAAGGACTTTGCCTGGGATTCAACTGATGACGATCAGTTGGATCAGCCGCTAGAGGAAAATGACCTTGCTGCTTTGGTTGGTTCAAGCAGTATAATCAGAGGAGGTGAATCATCATCATCATTCAACTTAGTGGATTTGAAGCTTGGCAGTACTACAAGTGCTGAAGTAGTGGCTCCAATTGCAACAAAGCCCTCGGTTTTAGTATCATCATCATCTTTGTCCAGGACCAGAAGGGTTGATCATCATCAGAAACTCAAAGTATCTTCATCGTCTACGGCGACATGCTTGGTTGATGGTTGCAAGGCAGACCTGAGTCGTTGCAGGGAGTATCATCGCCGCCACAGAGTCTGCGAGCTCCACTCCAAGACCCCAATTGTGGTCATCAGAGGTCAACAAAAGCGATTCTGCCAGCAGTGCAGCAGATTCCATTCTCTGGTGGAGTTTGATGAGGTGAAGAGAAGCTGCAGAAAACGTCTCAATGGACACAACCAGCGCAGAAGGAAACCCAAACCAGAATCCTTCTACTTTACTTCCAAGAACTTCCTCTCCAATTTCAAAGGCCCCAGAATATTGCACTTTGGAAATCCACAGCTATGTGCAACCACCAATGTCAGAAGTCTGTGGCCTTTTGAGGCCAAAAATACTGCAGATCATCAACCGATGCTTTATAATCGTCACCAGCGGTTGCAAGCAGTTGATCACCTAAGAACACCTCCCAATTCCTTCACTAACAATGAGGGAGCTGATAAACAGTTTATTTTCTTGCAAACCAATGACTCTAAACGTTCAGCTTTCAACCAAGCAGCAATCCCTCAAGCTTTTATGCAAGAGCCGTTTCCAACATTAACTGCTGCTGCAGCCTTACCACCAAGCACAAGGGCTGCTGCAGGTTCTGCAATTTCTTTTGATGGTACAACTCGCAGCATTGATCCGAGTTGTGCTCTCTATCTTCTGTCATCTCCAAATCCAACACATAGTTTGGTGAACACCAGTCTAAGCCACATGGTTCAGCCCAATGTAGTCACCAGTACAGATTCAGGTCATCAGCAACTCCAAATGAAGAGTTTCTTTGAACTCCCATCATATTCCTTGAATAATCATGTGGAGGACAAGTACTGTCTATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

381

Amino Acids

42.62

Weight (kDa)

9.06

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 100 - 173 3.5e-30 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014782)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53760
malus_domestica MD09G1008900.v1.1 MD17G1001400.v1.1
prunus_persica Prupe.3G308100_v2.0.a1 Prupe.3G308100_v2.0.a1
pyrus_communis pycom111g00720 pycom17g00760
rosa_chinensis RchiOBHm_Chr2g0175901
rosa_laevigata RLG00000022362
rosa_multiflora Rmu_ssc0000114.1_g000004
rosa_roxburghii Rroxscaffold_2G00076970
rosa_rugosa Rorug02G0588300
rosa_samantha Rh2AG667600 Rh2BG679100 Rh2CG641900 Rh2DG692600
rosa_wichuraiana Rw2G054720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
Acc36I ACCTGC 1 cut(s) 893
AccB7I CCANNNNNTGG 1 cut(s) 448
AccI GTMKAC 1 cut(s) 287
AciI CCGC 3 cut(s) 62, 352, 697
AclI AACGTT 1 cut(s) 799
AclWI GGATC 2 cut(s) 63, 938
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 4 cut(s) 166, 928, 1045, 1130
AfiI CCNNNNNNNGG 2 cut(s) 391, 448
AgsI TTSAA 8 cut(s) 36, 99, 139, 154, 571, 811, 1088, 1108
AjnI CCWGG 2 cut(s) 26, 236
AloI GAACNNNNNNTCC 2 cut(s) 545, 577
AluBI AGCT 7 cut(s) 157, 370, 477, 607, 758, 806, 833
AluI AGCT 7 cut(s) 157, 370, 477, 607, 758, 806, 833
Alw21I GWGCWC 2 cut(s) 372, 958
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 2 cut(s) 63, 938
AlwNI CAGNNNCTG 2 cut(s) 363, 908
AoxI GGCC 3 cut(s) 574, 638, 648
Asp700I GAANNNNTTC 1 cut(s) 1079
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 240, 575
AsuHPI GGTGA 6 cut(s) 131, 478, 683, 707, 1009, 1030
AvaII GGWCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 372, 958
BccI CCATC 3 cut(s) 302, 917, 1102
BceAI ACGGC 2 cut(s) 306, 832
BciT130I CCWGG 2 cut(s) 28, 238
BclI TGATCA 2 cut(s) 253, 712
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 4 cut(s) 478, 660, 870, 900
BfuAI ACCTGC 1 cut(s) 893
BmcAI AGTACT 2 cut(s) 166, 1130
Bme1390I CCNGG 2 cut(s) 28, 238
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 240, 575
BmiI GGNNCC 2 cut(s) 189, 577
BmrFI CCNGG 2 cut(s) 28, 238
BmsI GCATC 1 cut(s) 666
BoxI GACNNNNGTC 1 cut(s) 327
BplI GAGNNNNNCTC 4 cut(s) 359, 391, 940, 972
BpuEI CTTGAG 1 cut(s) 813
BsaBI GATNNNNATC 2 cut(s) 45, 258
BsaJI CCNNGG 2 cut(s) 27, 207
BsaXI ACNNNNNCTCC 4 cut(s) 545, 575, 1112, 1142
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 448
Bse1I ACTGG 2 cut(s) 1005, 1041
Bse8I GATNNNNATC 2 cut(s) 45, 258
BseBI CCWGG 2 cut(s) 28, 238
BseDI CCNNGG 2 cut(s) 27, 207
BseJI GATNNNNATC 2 cut(s) 45, 258
BseLI CCNNNNNNNGG 2 cut(s) 391, 448
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 1005, 1041
BseRI GAGGAG 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 451
BshFI GGCC 3 cut(s) 576, 640, 650
BsiHKAI GWGCWC 2 cut(s) 372, 958
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 391, 448
BsmAI GTCTC 1 cut(s) 494
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 3 cut(s) 576, 640, 650
Bsp1286I GDGCHC 2 cut(s) 372, 958
Bsp143I GATC 6 cut(s) 46, 55, 253, 664, 712, 943
BspACI CCGC 3 cut(s) 62, 352, 697
BspANI GGCC 3 cut(s) 576, 640, 650
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 189, 577
BspMAI CTGCAG 4 cut(s) 482, 664, 874, 904
BspMI ACCTGC 1 cut(s) 893
BspPI GGATC 2 cut(s) 63, 938
BsrI ACTGG 2 cut(s) 1005, 1041
BssECI CCNNGG 2 cut(s) 27, 207
BssMI GATC 6 cut(s) 46, 55, 253, 664, 712, 943
Bst2UI CCWGG 2 cut(s) 28, 238
Bst4CI ACNGT 2 cut(s) 768, 1133
Bst6I CTCTTC 2 cut(s) 464, 1070
BstAPI GCANNNNNTGC 1 cut(s) 908
BstC8I GCNNGC 3 cut(s) 368, 425, 705
BstDEI CTNAG 4 cut(s) 142, 326, 719, 1010
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 6 cut(s) 49, 58, 256, 667, 715, 946
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 6 cut(s) 46, 55, 253, 664, 712, 943
BstMWI GCNNNNNNNGC 4 cut(s) 194, 429, 872, 908
BstNI CCWGG 2 cut(s) 28, 238
BstNSI RCATGY 1 cut(s) 300
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 26, 236
BstSFI CTRYAG 4 cut(s) 478, 660, 870, 900
BsuRI GGCC 3 cut(s) 576, 640, 650
BtgZI GCGATG 1 cut(s) 332
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 3 cut(s) 368, 425, 705
CaiI CAGNNNCTG 2 cut(s) 363, 908
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 2 cut(s) 240, 575
Csp6I GTAC 4 cut(s) 165, 927, 1044, 1129
CviAII CATG 3 cut(s) 297, 1018, 1115
CviQI GTAC 4 cut(s) 165, 927, 1044, 1129
DdeI CTNAG 4 cut(s) 142, 326, 719, 1010
DpnI GATC 6 cut(s) 48, 57, 255, 666, 714, 945
DpnII GATC 6 cut(s) 46, 55, 253, 664, 712, 943
Eam1104I CTCTTC 2 cut(s) 464, 1070
EarI CTCTTC 2 cut(s) 464, 1070
Ecl136II GAGCTC 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 26, 236
EcoT38I GRGCYC 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 3 cut(s) 300, 1021, 1118
FaiI YATR 9 cut(s) 107, 298, 610, 684, 839, 990, 1019, 1099, 1116
FalI AAGNNNNNCTT 2 cut(s) 1067, 1099
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 296, 1017, 1114
FbaI TGATCA 2 cut(s) 253, 712
FblI GTMKAC 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 372
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 509
HaeIII GGCC 3 cut(s) 576, 640, 650
HhaI GCGC 1 cut(s) 510
Hin1II CATG 3 cut(s) 300, 1021, 1118
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HindIII AAGCTT 2 cut(s) 155, 831
HinfI GANTC 9 cut(s) 32, 122, 328, 360, 417, 438, 530, 791, 1049
HphI GGTGA 6 cut(s) 131, 478, 683, 707, 1009, 1030
Hpy166II GTNNAC 3 cut(s) 288, 407, 1000
Hpy188I TCNGA 5 cut(s) 113, 264, 401, 629, 948
Hpy188III TCNNGA 1 cut(s) 1140
Hpy8I GTNNAC 3 cut(s) 288, 407, 1000
HpyAV CCTTC 4 cut(s) 240, 507, 544, 748
HpyCH4III ACNGT 2 cut(s) 768, 1133
HpyCH4IV ACGT 2 cut(s) 487, 799
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 429, 872, 908
HpyF3I CTNAG 4 cut(s) 142, 326, 719, 1010
HpySE526I ACGT 2 cut(s) 487, 799
Hsp92II CATG 3 cut(s) 300, 1021, 1118
HspAI GCGC 1 cut(s) 508
Ksp22I TGATCA 2 cut(s) 253, 712
Kzo9I GATC 6 cut(s) 46, 55, 253, 664, 712, 943
LmnI GCTCC 3 cut(s) 193, 375, 755
LweI GCATC 1 cut(s) 666
MaeI CTAG 1 cut(s) 65
MaeII ACGT 2 cut(s) 487, 799
MaeIII GTNAC 2 cut(s) 689, 1036
MalI GATC 6 cut(s) 48, 57, 255, 666, 714, 945
MboI GATC 6 cut(s) 46, 55, 253, 664, 712, 943
MboII GAAGA 4 cut(s) 270, 481, 956, 1087
MfeI CAATTG 2 cut(s) 192, 387
MhlI GDGCHC 2 cut(s) 372, 958
MluCI AATT 5 cut(s) 192, 387, 565, 733, 912
MlyI GAGTC 3 cut(s) 337, 369, 785
MmeI TCCRAC 3 cut(s) 33, 878, 1007
MroXI GAANNNNTTC 1 cut(s) 1079
MseI TTAA 1 cut(s) 860
MslI CAYNNNNRTG 1 cut(s) 607
MspA1I CMGCKG 1 cut(s) 697
MspR9I CCNGG 2 cut(s) 28, 238
MunI CAATTG 2 cut(s) 192, 387
MvaI CCWGG 2 cut(s) 28, 238
MwoI GCNNNNNNNGC 4 cut(s) 194, 429, 872, 908
NdeII GATC 6 cut(s) 46, 55, 253, 664, 712, 943
NlaIII CATG 3 cut(s) 300, 1021, 1118
NlaIV GGNNCC 2 cut(s) 189, 577
NmuCI GTSAC 2 cut(s) 689, 1036
NspI RCATGY 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 6 cut(s) 32, 122, 417, 438, 530, 1049
PflMI CCANNNNNTGG 1 cut(s) 448
PfoI TCCNGGA 1 cut(s) 236
PleI GAGTC 3 cut(s) 336, 368, 785
PpsI GAGTC 3 cut(s) 336, 368, 785
PshAI GACNNNNGTC 1 cut(s) 327
PsiI TTATAA 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 26, 236
PspGI CCWGG 2 cut(s) 26, 236
PspN4I GGNNCC 2 cut(s) 189, 577
PspPI GGNCC 2 cut(s) 240, 575
PstI CTGCAG 4 cut(s) 482, 664, 874, 904
PstNI CAGNNNCTG 2 cut(s) 363, 908
RsaI GTAC 4 cut(s) 166, 928, 1045, 1130
RsaNI GTAC 4 cut(s) 165, 927, 1044, 1129
RseI CAYNNNNRTG 1 cut(s) 607
SacI GAGCTC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 860
Sau3AI GATC 6 cut(s) 46, 55, 253, 664, 712, 943
Sau96I GGNCC 2 cut(s) 240, 575
ScaI AGTACT 2 cut(s) 166, 1130
SchI GAGTC 3 cut(s) 337, 369, 785
ScrFI CCNGG 2 cut(s) 28, 238
SduI GDGCHC 2 cut(s) 372, 958
SfaNI GCATC 1 cut(s) 666
SfcI CTRYAG 4 cut(s) 478, 660, 870, 900
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 607
SmlI CTYRAG 1 cut(s) 828
SmoI CTYRAG 1 cut(s) 828
Sse9I AATT 5 cut(s) 192, 387, 565, 733, 912
SsiI CCGC 3 cut(s) 62, 352, 697
SspI AATATT 1 cut(s) 585
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 26, 236
TaaI ACNGT 2 cut(s) 768, 1133
TaiI ACGT 2 cut(s) 490, 802
TasI AATT 5 cut(s) 192, 387, 565, 733, 912
TatI WGTACW 3 cut(s) 164, 1043, 1128
TauI GCSGC 2 cut(s) 64, 354
TfiI GAWTC 6 cut(s) 32, 122, 417, 438, 530, 1049
Tru1I TTAA 1 cut(s) 860
Tru9I TTAA 1 cut(s) 860
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 2 cut(s) 689, 1036
Tsp45I GTSAC 2 cut(s) 689, 1036
TspDTI ATGAA 2 cut(s) 270, 1088
TspRI CASTG 1 cut(s) 434
Van91I CCANNNNNTGG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 2 cut(s) 166, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.