Rh2CG641900

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014782
Physical Location & Seq
Reverse (-)
81190926 .. 81194000
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG641900.1

Sequence Viewer

Length: 1197 bp
ATGGAGTGGGACTTCAAGGACTTTGCTTGGGATTCAAATGATGATGACCAGTTGGATCAGCAGAAAGAGGAAAATGACCTTGCTGCTTTGGTTGGTTCAAGTAGTACTAGTAGCAGAGGAGGTGAATTATCATCCTTCAGTTTAGTGGATTTGAAGCTTGGCAGTACTAGTGCTGAAGTTGTGGCTCCAATTGCAATAAAGCCCTCGGTTTTAGTATCATCATCACCTTTGTCGACAACCAGAAGAGTTGATCATCATCAGAAACTCAAAGTATCATCATCGTCTAAGTCGACATGCTTGGTTGATGGTTGCAAGGCAGACCTGAGTGGCTGCAGGGAGTATCATCGCCGGCATAGAGTCTGCGAGCTCCACTCCAAGACCCCAATTGTGGTGATCAGAGGTCAACAGAAGCGATTCTGCCAGCAGTGCAGCAGATTCCATTCTCTGGTGGAGTTTGATGAGGTGAAGAGAAGCTGCAGAAAACGTCTCAATGGACACAACCAGCGCCGGAGGAAACCTAAACCAGAATCCTTCTACTTTACTTCCAAGAGCTTCCTCTCCAATTACAAAGGCCCCAGAATCTTGCACTTTGGAACTCCACAGCTATGTGCAACCACCAATGCTAGAAGTCTGTGGCCTTTCGAGGCCAAAAGTACAGCAGTTCATCAACCCGTGCTTTACAATCGTCACCAGCGGTTGCACGCAGTTGAACACCAACAAATTCCTCCCAATTCCTTCACTAACAATGGAGGAGCTGATAAACAGTTCATTTTCTTGCAGACCAATGACCCTAAAATTGCAACTTTTAAGCAAGCAGCAACCCCTCAAGCTTTTATGCAAGAGCCGTTTCCAACATTAACTGCTGCTGCAGCCTTACCGCATAGCACAAGGGCTGCTGCTGGTCCTGCAGTTTCTTTTGATGGTACAACTCGAGGCATTGATTCGAGTTGTGCTCTCTATCTTCTGTCATCATCAAATCCAAAACAAAGTATGGTGAACAACAGTCTAAGCCACTTGGTTCAGTCCAATGTGGTCACCAATACTGATTCAGGTCATCAGCAACTCCAAATGAAGAGTTTCTCTGAATTCCCATCATATTGCTCAAATAATCATGTGGAGGACAAGTATTTTCTGAGGCCTGATCCTGATGGCTTGTTGGACACTGGGGCTCAAATGCTTCCAATTTTATTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

398

Amino Acids

44.34

Weight (kDa)

8.94

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 99 - 172 1e-30 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014782)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53760
malus_domestica MD09G1008900.v1.1 MD17G1001400.v1.1
prunus_persica Prupe.3G308100_v2.0.a1 Prupe.3G308100_v2.0.a1
pyrus_communis pycom111g00720 pycom17g00760
rosa_chinensis RchiOBHm_Chr2g0175901
rosa_laevigata RLG00000022362
rosa_multiflora Rmu_ssc0000114.1_g000004
rosa_roxburghii Rroxscaffold_2G00076970
rosa_rugosa Rorug02G0588300
rosa_samantha Rh2AG667600 Rh2BG679100 Rh2CG641900 Rh2DG692600
rosa_wichuraiana Rw2G054720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 445
AccI GTMKAC 2 cut(s) 233, 290
AciI CCGC 2 cut(s) 694, 878
AclWI GGATC 2 cut(s) 63, 1136
AcsI RAATTY 2 cut(s) 720, 1085
AcuI CTGAAG 2 cut(s) 121, 195
AfaI GTAC 4 cut(s) 106, 166, 655, 925
AfiI CCNNNNNNNGG 2 cut(s) 388, 445
AgsI TTSAA 5 cut(s) 16, 36, 99, 154, 710
AhlI ACTAGT 2 cut(s) 107, 167
AluBI AGCT 7 cut(s) 157, 367, 474, 552, 604, 755, 830
AluI AGCT 7 cut(s) 157, 367, 474, 552, 604, 755, 830
Alw21I GWGCWC 2 cut(s) 369, 955
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 2 cut(s) 63, 1136
Ama87I CYCGRG 1 cut(s) 930
AoxI GGCC 4 cut(s) 571, 635, 645, 1136
ApoI RAATTY 2 cut(s) 720, 1085
Asp700I GAANNNNTTC 2 cut(s) 413, 1076
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 2 cut(s) 572, 902
AsuHPI GGTGA 7 cut(s) 134, 216, 403, 475, 680, 1006, 1027
AvaI CYCGRG 1 cut(s) 930
AvaII GGWCC 1 cut(s) 902
BanII GRGCYC 2 cut(s) 369, 1171
Bbv12I GWGCWC 2 cut(s) 369, 955
BccI CCATC 4 cut(s) 299, 914, 1099, 1142
BceAI ACGGC 1 cut(s) 829
BclI TGATCA 2 cut(s) 250, 393
BcoDI GTCTC 1 cut(s) 491
BcuI ACTAGT 2 cut(s) 107, 167
BfaI CTAG 3 cut(s) 108, 168, 624
BfmI CTRYAG 4 cut(s) 331, 475, 867, 906
BfoI RGCGCY 1 cut(s) 508
BmcAI AGTACT 2 cut(s) 106, 166
Bme18I GGWCC 1 cut(s) 902
BmeT110I CYCGRG 1 cut(s) 930
BmgT120I GGNCC 2 cut(s) 572, 902
BmiI GGNNCC 2 cut(s) 186, 574
BmrI ACTGGG 1 cut(s) 1173
BmuI ACTGGG 1 cut(s) 1173
BplI GAGNNNNNCTC 4 cut(s) 356, 388, 937, 969
BpuEI CTTGAG 1 cut(s) 810
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 1109, 1139
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 445
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 2 cut(s) 49, 1168
Bse8I GATNNNNATC 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 388, 445
BseMII CTCAG 2 cut(s) 314, 1124
BseNI ACTGG 2 cut(s) 49, 1168
BseRI GAGGAG 2 cut(s) 132, 765
BsgI GTGCAG 1 cut(s) 448
BshFI GGCC 4 cut(s) 573, 637, 647, 1138
BsiHKAI GWGCWC 2 cut(s) 369, 955
BsiHKCI CYCGRG 1 cut(s) 930
BsiSI CCGG 2 cut(s) 349, 508
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 388, 445
BsmAI GTCTC 1 cut(s) 491
BsmBI CGTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 4 cut(s) 573, 637, 647, 1138
BsoBI CYCGRG 1 cut(s) 930
Bsp1286I GDGCHC 3 cut(s) 369, 955, 1171
Bsp143I GATC 4 cut(s) 55, 250, 393, 1141
BspACI CCGC 2 cut(s) 694, 878
BspANI GGCC 4 cut(s) 573, 637, 647, 1138
BspCNI CTCAG 2 cut(s) 315, 1125
BspLI GGNNCC 2 cut(s) 186, 574
BspMAI CTGCAG 4 cut(s) 335, 479, 871, 910
BspPI GGATC 2 cut(s) 63, 1136
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 2 cut(s) 49, 1168
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 4 cut(s) 55, 250, 393, 1141
Bst4CI ACNGT 2 cut(s) 765, 1004
Bst6I CTCTTC 3 cut(s) 238, 461, 1067
BstC8I GCNNGC 5 cut(s) 350, 365, 422, 702, 813
BstDEI CTNAG 4 cut(s) 285, 323, 1007, 1133
BstEII GGTNACC 1 cut(s) 1033
BstF5I GGATG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 4 cut(s) 58, 253, 396, 1144
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 4 cut(s) 55, 250, 393, 1141
BstMWI GCNNNNNNNGC 4 cut(s) 191, 426, 869, 905
BstNSI RCATGY 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 1033
BstSFI CTRYAG 4 cut(s) 331, 475, 867, 906
BsuRI GGCC 4 cut(s) 573, 637, 647, 1138
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 431, 1161
Cac8I GCNNGC 5 cut(s) 350, 365, 422, 702, 813
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 572, 902
Csp6I GTAC 4 cut(s) 105, 165, 654, 924
CviAII CATG 2 cut(s) 294, 1112
CviQI GTAC 4 cut(s) 105, 165, 654, 924
DdeI CTNAG 4 cut(s) 285, 323, 1007, 1133
DpnI GATC 4 cut(s) 57, 252, 395, 1143
DpnII GATC 4 cut(s) 55, 250, 393, 1141
Eam1104I CTCTTC 3 cut(s) 238, 461, 1067
EarI CTCTTC 3 cut(s) 238, 461, 1067
Ecl136II GAGCTC 1 cut(s) 367
Eco147I AGGCCT 1 cut(s) 1138
Eco24I GRGCYC 2 cut(s) 369, 1171
Eco47I GGWCC 1 cut(s) 902
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 2 cut(s) 121, 195
Eco88I CYCGRG 1 cut(s) 930
Eco91I GGTNACC 1 cut(s) 1033
EcoICRI GAGCTC 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 1033
EcoRI GAATTC 1 cut(s) 1085
EcoT38I GRGCYC 2 cut(s) 369, 1171
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 2 cut(s) 297, 1115
FaiI YATR 8 cut(s) 295, 354, 607, 836, 882, 992, 1096, 1113
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 293, 1111
FbaI TGATCA 2 cut(s) 250, 393
FblI GTMKAC 2 cut(s) 233, 290
FokI GGATG 1 cut(s) 118
FriOI GRGCYC 2 cut(s) 369, 1171
FspBI CTAG 3 cut(s) 108, 168, 624
GlaI GCGC 1 cut(s) 506
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 4 cut(s) 573, 637, 647, 1138
HapII CCGG 2 cut(s) 349, 508
HhaI GCGC 1 cut(s) 507
Hin1II CATG 2 cut(s) 297, 1115
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 3 cut(s) 234, 291, 404
HindII GTYRAC 3 cut(s) 234, 291, 404
HindIII AAGCTT 2 cut(s) 155, 828
HinfI GANTC 8 cut(s) 32, 357, 414, 435, 527, 579, 941, 1046
HpaII CCGG 2 cut(s) 349, 508
HphI GGTGA 7 cut(s) 134, 216, 403, 475, 680, 1006, 1027
Hpy166II GTNNAC 4 cut(s) 234, 291, 404, 997
Hpy188I TCNGA 4 cut(s) 261, 398, 1084, 1134
Hpy188III TCNNGA 1 cut(s) 1145
Hpy8I GTNNAC 4 cut(s) 234, 291, 404, 997
HpyAV CCTTC 3 cut(s) 145, 541, 745
HpyCH4III ACNGT 2 cut(s) 765, 1004
HpyCH4IV ACGT 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 426, 869, 905
HpyF3I CTNAG 4 cut(s) 285, 323, 1007, 1133
HpySE526I ACGT 1 cut(s) 484
Hsp92II CATG 2 cut(s) 297, 1115
HspAI GCGC 1 cut(s) 505
KroI GCCGGC 1 cut(s) 348
KroNI GCCGGC 1 cut(s) 350
Ksp22I TGATCA 2 cut(s) 250, 393
Kzo9I GATC 4 cut(s) 55, 250, 393, 1141
LmnI GCTCC 3 cut(s) 190, 372, 752
MaeI CTAG 3 cut(s) 108, 168, 624
MaeII ACGT 1 cut(s) 484
MaeIII GTNAC 2 cut(s) 686, 1033
MalI GATC 4 cut(s) 57, 252, 395, 1143
MboI GATC 4 cut(s) 55, 250, 393, 1141
MboII GAAGA 4 cut(s) 255, 478, 953, 1084
MfeI CAATTG 2 cut(s) 189, 384
MhlI GDGCHC 3 cut(s) 369, 955, 1171
MluCI AATT 9 cut(s) 125, 189, 384, 562, 720, 730, 795, 1085, 1182
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 3 cut(s) 33, 875, 1137
MroNI GCCGGC 1 cut(s) 348
MroXI GAANNNNTTC 2 cut(s) 413, 1076
MseI TTAA 2 cut(s) 807, 857
MslI CAYNNNNRTG 1 cut(s) 604
MspA1I CMGCKG 1 cut(s) 694
MspI CCGG 2 cut(s) 349, 508
MunI CAATTG 2 cut(s) 189, 384
MwoI GCNNNNNNNGC 4 cut(s) 191, 426, 869, 905
NaeI GCCGGC 1 cut(s) 350
NdeII GATC 4 cut(s) 55, 250, 393, 1141
NgoMIV GCCGGC 1 cut(s) 348
NlaIII CATG 2 cut(s) 297, 1115
NlaIV GGNNCC 2 cut(s) 186, 574
NmuCI GTSAC 2 cut(s) 686, 1033
NspI RCATGY 1 cut(s) 297
PaeR7I CTCGAG 1 cut(s) 930
PceI AGGCCT 1 cut(s) 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PdiI GCCGGC 1 cut(s) 350
PdmI GAANNNNTTC 2 cut(s) 413, 1076
PfeI GAWTC 7 cut(s) 32, 414, 435, 527, 579, 941, 1046
PflMI CCANNNNNTGG 1 cut(s) 445
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 1033
PspN4I GGNNCC 2 cut(s) 186, 574
PspPI GGNCC 2 cut(s) 572, 902
PspXI VCTCGAGB 1 cut(s) 930
PstI CTGCAG 4 cut(s) 335, 479, 871, 910
RsaI GTAC 4 cut(s) 106, 166, 655, 925
RsaNI GTAC 4 cut(s) 105, 165, 654, 924
RseI CAYNNNNRTG 1 cut(s) 604
SacI GAGCTC 1 cut(s) 369
SalI GTCGAC 2 cut(s) 232, 289
SaqAI TTAA 2 cut(s) 807, 857
Sau3AI GATC 4 cut(s) 55, 250, 393, 1141
Sau96I GGNCC 2 cut(s) 572, 902
ScaI AGTACT 2 cut(s) 106, 166
SchI GAGTC 1 cut(s) 366
SduI GDGCHC 3 cut(s) 369, 955, 1171
SfcI CTRYAG 4 cut(s) 331, 475, 867, 906
Sfr274I CTCGAG 1 cut(s) 930
SinI GGWCC 1 cut(s) 902
SlaI CTCGAG 1 cut(s) 930
SmiMI CAYNNNNRTG 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 825, 930
SmoI CTYRAG 2 cut(s) 825, 930
SpeI ACTAGT 2 cut(s) 107, 167
Sse9I AATT 9 cut(s) 125, 189, 384, 562, 720, 730, 795, 1085, 1182
SseBI AGGCCT 1 cut(s) 1138
SsiI CCGC 2 cut(s) 694, 878
SspMI CTAG 3 cut(s) 108, 168, 624
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 1138
TaaI ACNGT 2 cut(s) 765, 1004
TaiI ACGT 1 cut(s) 487
TaqI TCGA 5 cut(s) 233, 290, 642, 931, 944
TasI AATT 9 cut(s) 125, 189, 384, 562, 720, 730, 795, 1085, 1182
TatI WGTACW 3 cut(s) 104, 164, 653
TfiI GAWTC 7 cut(s) 32, 414, 435, 527, 579, 941, 1046
Tru1I TTAA 2 cut(s) 807, 857
Tru9I TTAA 2 cut(s) 807, 857
TscAI CASTG 2 cut(s) 431, 1168
TseFI GTSAC 2 cut(s) 686, 1033
Tsp45I GTSAC 2 cut(s) 686, 1033
TspDTI ATGAA 3 cut(s) 653, 757, 1085
TspRI CASTG 2 cut(s) 431, 1168
Van91I CCANNNNNTGG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 902
XapI RAATTY 2 cut(s) 720, 1085
XceI RCATGY 1 cut(s) 297
XhoI CTCGAG 1 cut(s) 930
XmiI GTMKAC 2 cut(s) 233, 290
XmnI GAANNNNTTC 2 cut(s) 413, 1076
XspI CTAG 3 cut(s) 108, 168, 624
ZrmI AGTACT 2 cut(s) 106, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.