Rorug02G0588300

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014782
Physical Location & Seq
Reverse (-)
71052409 .. 71052912
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0588300.1

Sequence Viewer

Length: 504 bp
ATGTCTAGTTGCCAAGCATATGATGATCAAATGTCCTCATCTGGCTATTTCTTGGACCAACAGAGGACAGAGAATAATCAAATACTAGATTTCCTAAGCGCAGTAGCCAATCTTGATTTAGGAGCAGCATCCCTAGCCTACGACGAGCTCATGTCTACCCAATCAGAGATCTCAGGCTCTTCCTCCTCCAAAGAATTCAGTTTCCTTGACTCTCAAGCAACACCCCAAGCGTACAGTACATGCATGCCCCAATCAGAATCTGTCGACCAATTTTGTTTTAGTTCTGGCAAGCTATCCCGTGTCCCTCCGGCAGGAGCGGAGCGCGGTAACTGCTTGAAGGTTGTTGCGGAAGCCAAGGAGATGCCTTGTGAGCGTTGGTTTCAGTTGCCCTTTATTGAAAAGCGGCTGGACAAGAGCACCTACTTCCTGCCGTTGATGTTTACTGTGCCTGTAATGGTATTGGCGATGTCGTTGTTGATCATGAAGACACGCTCGAAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

4.74

Isoelectric Point (pI)

71.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014782)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53760
malus_domestica MD09G1008900.v1.1 MD17G1001400.v1.1
prunus_persica Prupe.3G308100_v2.0.a1 Prupe.3G308100_v2.0.a1
pyrus_communis pycom111g00720 pycom17g00760
rosa_chinensis RchiOBHm_Chr2g0175901
rosa_laevigata RLG00000022362
rosa_multiflora Rmu_ssc0000114.1_g000004
rosa_roxburghii Rroxscaffold_2G00076970
rosa_rugosa Rorug02G0588300
rosa_samantha Rh2AG667600 Rh2BG679100 Rh2CG641900 Rh2DG692600
rosa_wichuraiana Rw2G054720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 2 cut(s) 155, 264
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 317, 324, 347, 403
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 2 cut(s) 233, 238
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 337, 398
AluBI AGCT 2 cut(s) 148, 292
AluI AGCT 2 cut(s) 148, 292
Alw21I GWGCWC 2 cut(s) 150, 419
AlwNI CAGNNNCTG 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 2 cut(s) 101, 324
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 150, 419
BbvI GCAGC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 415
BclI TGATCA 2 cut(s) 25, 477
BfaI CTAG 4 cut(s) 6, 86, 134, 502
BglII AGATCT 1 cut(s) 168
BisI GCNGC 2 cut(s) 126, 404
BlsI GCNGC 2 cut(s) 127, 405
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmsI GCATC 2 cut(s) 137, 351
BpiI GAAGAC 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 150, 419
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 150, 419
Bsp143I GATC 3 cut(s) 25, 168, 477
BspACI CCGC 4 cut(s) 317, 324, 347, 403
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 1 cut(s) 324
BspHI TCATGA 1 cut(s) 480
BspQI GCTCTTC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 3 cut(s) 25, 168, 477
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 236, 445
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 245, 290
BstDEI CTNAG 2 cut(s) 95, 172
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 2 cut(s) 101, 324
BstKTI GATC 3 cut(s) 28, 171, 480
BstMBI GATC 3 cut(s) 25, 168, 477
BstMWI GCNNNNNNNGC 3 cut(s) 134, 330, 370
BstNSI RCATGY 2 cut(s) 243, 247
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 479
BtsCI GGATG 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 245, 290
CaiI CAGNNNCTG 1 cut(s) 260
CciI TCATGA 1 cut(s) 480
CfoI GCGC 2 cut(s) 101, 324
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 232, 237
CviAII CATG 4 cut(s) 151, 240, 244, 481
CviJI RGCY 8 cut(s) 45, 107, 137, 148, 177, 292, 353, 406
CviKI_1 RGCY 8 cut(s) 45, 107, 137, 148, 177, 292, 353, 406
CviQI GTAC 2 cut(s) 232, 237
DdeI CTNAG 2 cut(s) 95, 172
DpnI GATC 3 cut(s) 27, 170, 479
DpnII GATC 3 cut(s) 25, 168, 477
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 4 cut(s) 154, 243, 247, 484
FaiI YATR 6 cut(s) 19, 21, 152, 241, 245, 482
FaqI GGGAC 1 cut(s) 287
FatI CATG 4 cut(s) 150, 239, 243, 480
FauNDI CATATG 1 cut(s) 19
FbaI TGATCA 2 cut(s) 25, 477
FblI GTMKAC 2 cut(s) 155, 264
Fnu4HI GCNGC 2 cut(s) 126, 404
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 126, 404
FspBI CTAG 4 cut(s) 6, 86, 134, 502
GlaI GCGC 2 cut(s) 100, 323
GluI GCNGC 2 cut(s) 126, 404
HapII CCGG 1 cut(s) 308
HhaI GCGC 2 cut(s) 101, 324
Hin1II CATG 4 cut(s) 154, 243, 247, 484
Hin6I GCGC 2 cut(s) 99, 322
HinP1I GCGC 2 cut(s) 99, 322
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 2 cut(s) 209, 257
HpaII CCGG 1 cut(s) 308
Hpy166II GTNNAC 3 cut(s) 156, 265, 441
Hpy188I TCNGA 2 cut(s) 166, 256
Hpy188III TCNNGA 2 cut(s) 113, 481
Hpy8I GTNNAC 3 cut(s) 156, 265, 441
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 236, 445
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 330, 370
HpyF3I CTNAG 2 cut(s) 95, 172
Hsp92II CATG 4 cut(s) 154, 243, 247, 484
HspAI GCGC 2 cut(s) 99, 322
Ksp22I TGATCA 2 cut(s) 25, 477
Kzo9I GATC 3 cut(s) 25, 168, 477
LguI GCTCTTC 1 cut(s) 184
LmnI GCTCC 3 cut(s) 122, 314, 319
LpnPI CCDG 8 cut(s) 27, 159, 270, 297, 321, 392, 440, 462
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 137, 351
MaeI CTAG 4 cut(s) 6, 86, 134, 502
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 27, 170, 479
MbiI CCGCTC 1 cut(s) 317
MboI GATC 3 cut(s) 25, 168, 477
MboII GAAGA 2 cut(s) 171, 496
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 2 cut(s) 150, 419
MluCI AATT 2 cut(s) 194, 269
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 5 cut(s) 46, 57, 193, 196, 315
Mph1103I ATGCAT 1 cut(s) 245
MspI CCGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 134, 330, 370
NdeI CATATG 1 cut(s) 19
NdeII GATC 3 cut(s) 25, 168, 477
NlaIII CATG 4 cut(s) 154, 243, 247, 484
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 2 cut(s) 243, 247
PaeI GCATGC 1 cut(s) 247
PagI TCATGA 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 127, 405
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 2 cut(s) 233, 238
RsaNI GTAC 2 cut(s) 232, 237
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 184
SatI GCNGC 2 cut(s) 126, 404
Sau3AI GATC 3 cut(s) 25, 168, 477
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 150, 419
SetI ASST 5 cut(s) 150, 294, 342, 422, 503
SfaNI GCATC 2 cut(s) 137, 351
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
SphI GCATGC 1 cut(s) 247
Sse9I AATT 2 cut(s) 194, 269
SsiI CCGC 4 cut(s) 317, 324, 347, 403
SspMI CTAG 4 cut(s) 6, 86, 134, 502
SstI GAGCTC 1 cut(s) 150
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 236, 445
TaqI TCGA 2 cut(s) 264, 494
TasI AATT 2 cut(s) 194, 269
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 1 cut(s) 257
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 1 cut(s) 194
XceI RCATGY 2 cut(s) 243, 247
XmiI GTMKAC 2 cut(s) 155, 264
XspI CTAG 4 cut(s) 6, 86, 134, 502
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.