FvH4_7g04124

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0022264
Physical Location & Seq
Reverse (-)
4728629 .. 4730547
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04124.t1

Sequence Viewer

Length: 666 bp
ATGCCAGAGCCAACAAATTTAAAAGCATTGAGAAGCCTCCAAGGAAAACTCGCATTCATCTCAATCCTCGCGGGTCGATGCCAACCTTTAAGTCAACTCATGAAGAAGAATGTGCCTTTCGTATGGGATGAACTCAAGAAAGATGAGGTGGCATGGGAGATGGCCTTGTACTATTTAAGTCAAACTCTCACAGATTGGGAGATTTCAGATGACTTGCCAGACGAGGAAGTATTTCTTGCGGAGGTCCTCTCCACTTGGAAGATGTTATTCGATGGATCTTCGAGAGTAGATGGAGTAGGGGCTAGCGTTGTCTTTGTCACCCCACAAAGGCAAATATTGCCATATGCATTCACTCTTGTGATCGCGCCTTTATACGAAAGTTCCAATGTTGTGTTCGTCTATGCTATTGACGTTGAGGATTGGAGGCATCCTCTGATCGACTATCTTGAACACAACAAGTTGTCTGATGATCCGAAGCAACATGCTATGCAAAAACTTAGCAAGAGGTATCACTTCAAGCTACACTTTTCTTCGATGTATAATACCCCAGCAAATGGTTTGGTGGAGGCATTTAATAAGACGTTCTGCAACATCTTGAAGAAGACCGTCAGCAAGTCACGAAGAGACTGGCATGAGAAGATGGGCGAAAGCACTGTGAGCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

222

Amino Acids

25.48

Weight (kDa)

6.08

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022264)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04124
malus_domestica MD17G1175600.v1.1
rosa_chinensis RchiOBHm_Chr2g0142741
rosa_roxburghii Rroxscaffold_3G00245780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 554
AccII CGCG 2 cut(s) 71, 365
AciI CCGC 2 cut(s) 71, 239
AclWI GGATC 2 cut(s) 283, 464
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 327, 554
AgsI TTSAA 3 cut(s) 449, 517, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 1 cut(s) 520
AluI AGCT 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 2 cut(s) 283, 464
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 310
AsuNHI GCTAGC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 608
BccI CCATC 4 cut(s) 154, 266, 284, 634
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmsI GCATC 2 cut(s) 68, 436
BmtI GCTAGC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 608
BplI GAGNNNNNCTC 4 cut(s) 233, 265, 415, 447
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 554
Bse1I ACTGG 1 cut(s) 632
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 133, 427
BseLI CCNNNNNNNGG 2 cut(s) 327, 554
BseNI ACTGG 1 cut(s) 632
BseYI CCCAGC 1 cut(s) 547
Bsh1236I CGCG 2 cut(s) 71, 365
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 327, 554
BsmAI GTCTC 1 cut(s) 618
BsmI GAATGC 2 cut(s) 53, 347
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 275, 360, 435, 469
BspACI CCGC 2 cut(s) 71, 239
BspANI GGCC 1 cut(s) 164
BspFNI CGCG 2 cut(s) 71, 365
BspHI TCATGA 1 cut(s) 99
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 283, 464
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 4 cut(s) 275, 360, 435, 469
BssT1I CCWWGG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 607, 655
Bst6I CTCTTC 1 cut(s) 616
BstAPI GCANNNNNTGC 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 133, 427
BstFNI CGCG 2 cut(s) 71, 365
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 4 cut(s) 278, 363, 438, 472
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 4 cut(s) 275, 360, 435, 469
BstMWI GCNNNNNNNGC 2 cut(s) 337, 657
BstNSI RCATGY 1 cut(s) 485
BstUI CGCG 2 cut(s) 71, 365
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 133, 427
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 304
CciI TCATGA 1 cut(s) 99
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 169
CviAII CATG 4 cut(s) 100, 153, 482, 632
CviJI RGCY 5 cut(s) 10, 36, 164, 302, 520
CviKI_1 RGCY 5 cut(s) 10, 36, 164, 302, 520
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 497
DpnI GATC 4 cut(s) 277, 362, 437, 471
DpnII GATC 4 cut(s) 275, 360, 435, 469
DraI TTTAAA 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 4 cut(s) 103, 156, 485, 635
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 509, 541
FatI CATG 4 cut(s) 99, 152, 481, 631
FauI CCCGC 1 cut(s) 64
FauNDI CATATG 1 cut(s) 343
FokI GGATG 2 cut(s) 140, 414
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 551
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 1 cut(s) 367
Hin1II CATG 4 cut(s) 103, 156, 485, 635
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 4 cut(s) 208, 435, 466, 474
Hpy188III TCNNGA 6 cut(s) 100, 136, 282, 446, 595, 618
Hpy8I GTNNAC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 607, 655
HpyCH4IV ACGT 2 cut(s) 411, 581
HpyCH4V TGCA 3 cut(s) 347, 490, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 657
HpyF3I CTNAG 1 cut(s) 497
HpySE526I ACGT 2 cut(s) 411, 581
Hsp92II CATG 4 cut(s) 103, 156, 485, 635
HspAI GCGC 1 cut(s) 365
Kzo9I GATC 4 cut(s) 275, 360, 435, 469
LpnPI CCDG 4 cut(s) 18, 231, 561, 613
LweI GCATC 2 cut(s) 68, 436
MaeI CTAG 1 cut(s) 303
MaeII ACGT 2 cut(s) 411, 581
MaeIII GTNAC 2 cut(s) 316, 615
MalI GATC 4 cut(s) 277, 362, 437, 471
MboI GATC 4 cut(s) 275, 360, 435, 469
MboII GAAGA 9 cut(s) 115, 118, 270, 271, 522, 610, 613, 633, 649
MflI RGATCY 1 cut(s) 275
MluCI AATT 1 cut(s) 16
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 4 cut(s) 20, 89, 176, 573
MslI CAYNNNNRTG 1 cut(s) 356
Mva1269I GAATGC 2 cut(s) 53, 347
MvnI CGCG 2 cut(s) 71, 365
MwoI GCNNNNNNNGC 2 cut(s) 337, 657
NdeI CATATG 1 cut(s) 343
NdeII GATC 4 cut(s) 275, 360, 435, 469
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 4 cut(s) 103, 156, 485, 635
NmuCI GTSAC 2 cut(s) 316, 615
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 485
OliI CACNNNNGTG 1 cut(s) 356
PagI TCATGA 1 cut(s) 99
PctI GAATGC 2 cut(s) 53, 347
PdmI GAANNNNTTC 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 547
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 4 cut(s) 20, 89, 176, 573
Sau3AI GATC 4 cut(s) 275, 360, 435, 469
Sau96I GGNCC 1 cut(s) 244
SetI ASST 7 cut(s) 88, 150, 246, 414, 509, 522, 584
SfaNI GCATC 2 cut(s) 68, 436
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 71, 239
SspI AATATT 1 cut(s) 336
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 607, 655
TaiI ACGT 2 cut(s) 414, 584
TaqI TCGA 5 cut(s) 76, 270, 281, 438, 533
TasI AATT 1 cut(s) 16
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 4 cut(s) 20, 89, 176, 573
Tru9I TTAA 4 cut(s) 20, 89, 176, 573
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 2 cut(s) 316, 615
Tsp45I GTSAC 2 cut(s) 316, 615
TspDTI ATGAA 3 cut(s) 46, 116, 144
TspRI CASTG 1 cut(s) 658
Van91I CCANNNNNTGG 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 16
XceI RCATGY 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.