RchiOBHm_Chr2g0142741

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
60361923 .. 60362148
226 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51287

Sequence Viewer

Length: 168 bp
ATGAGTGGAGGACAGAAGCAGTGGATTCAGCTATCCCGAGCCATCTATAGTGATGCTGATATATATCTCCATGATGACCCCTTTAGTGCAGTGGATGCACACACAGCTGTAATTCTCTTTCGTGGTTGCGTCATGGAGGCTCAGGCAAAGAAAACTGAATTTTGGTGA

Protein Analysis

55

Amino Acids

6.25

Weight (kDa)

5.39

Isoelectric Point (pI)

28.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022264)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04124
malus_domestica MD17G1175600.v1.1
rosa_chinensis RchiOBHm_Chr2g0142741
rosa_roxburghii Rroxscaffold_3G00245780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 158
AluBI AGCT 2 cut(s) 31, 107
AluI AGCT 2 cut(s) 31, 107
Ama87I CYCGRG 1 cut(s) 36
ApoI RAATTY 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 36
BccI CCATC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 36
BmsI GCATC 2 cut(s) 43, 85
Bpu10I CCTNAGC 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 63
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 95, 104
BstSFI CTRYAG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 2 cut(s) 26, 96
BtsIMutI CAGTG 2 cut(s) 26, 96
CseI GACGC 1 cut(s) 118
CviAII CATG 2 cut(s) 71, 133
CviJI RGCY 4 cut(s) 31, 41, 107, 140
CviKI_1 RGCY 4 cut(s) 31, 41, 107, 140
DdeI CTNAG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 36
FaeI CATG 2 cut(s) 74, 136
FaiI YATR 5 cut(s) 48, 62, 64, 72, 134
FatI CATG 2 cut(s) 70, 132
FokI GGATG 1 cut(s) 107
HgaI GACGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 74, 136
HinfI GANTC 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 89, 98
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 104
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 2 cut(s) 74, 136
LpnPI CCDG 1 cut(s) 128
LweI GCATC 2 cut(s) 43, 85
MluCI AATT 2 cut(s) 111, 158
MnlI CCTC 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 95, 104
NlaIII CATG 2 cut(s) 74, 136
PfeI GAWTC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 107
SetI ASST 2 cut(s) 33, 109
SfaNI GCATC 2 cut(s) 43, 85
SfcI CTRYAG 1 cut(s) 46
SgeI CNNG 6 cut(s) 48, 50, 83, 134, 145, 155
Sse9I AATT 2 cut(s) 111, 158
TasI AATT 2 cut(s) 111, 158
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 2 cut(s) 26, 96
TspRI CASTG 2 cut(s) 26, 96
XapI RAATTY 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.