Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0022264

Physical Location & Seq

Genomic Coordinates Forward (+)

19719830 .. 19720301

Gene Structure 472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1175600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTAGCTATACTTGTTGATGTATTTGAAACGATAGCCCACGTTTTTCAGACTTCTTGGATACAAAGCAGGACAATTTGTGAAAATATACTCTTTGGGAAGGCAACGGACAAGAATAAATATGAGAATACCATAAAAGCTTGTGCTCTGGATAAGGACATTAACAGTTTTGAGGATGGTGATCTTACAGAAATAGGCCAGAGGGGGGTTAACATGCGTGGAGGACAGAAGCATTGGATTCACTTGGCCCGAGCTGTCTATACTGATGCTGATATGTATTTCCTTGATGACCCCTTTAGCACAGTGGATGCACATACTGCCACAACTCTCTTTCATGTAAGAAAGACAAAGTCAAGGGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

122

Amino Acids

13.78

Weight (kDa)

6.17

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	11 - 99	4.7e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022264)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04124
malus_domestica	MD17G1175600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0142741
rosa_roxburghii	Rroxscaffold_3G00245780

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	3 cut(s)	8, 140, 254
AluI	AGCT	3 cut(s)	8, 140, 254
Alw21I	GWGCWC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	2 cut(s)	196, 246
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	1 cut(s)	170
BciVI	GTATCC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	247
BmsI	GCATC	2 cut(s)	256, 298
BmtI	GCTAGC	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	180
BseGI	GGATG	2 cut(s)	181, 313
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	198, 248
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	205
BsnI	GGCC	2 cut(s)	198, 248
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	198, 248
BspOI	GCTAGC	1 cut(s)	8
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	167, 304
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	181, 313
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	198, 248
BtsCI	GGATG	2 cut(s)	181, 313
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	2 cut(s)	214, 335
CviJI	RGCY	6 cut(s)	8, 38, 140, 198, 248, 254
CviKI_1	RGCY	6 cut(s)	8, 38, 140, 198, 248, 254
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	249
FaeI	CATG	2 cut(s)	217, 338
FatI	CATG	2 cut(s)	213, 334
FokI	GGATG	2 cut(s)	188, 320
FspBI	CTAG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	198, 248
Hin1II	CATG	2 cut(s)	217, 338
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	1 cut(s)	238
HpaI	GTTAAC	1 cut(s)	211
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	167, 304
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	217, 338
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	3 cut(s)	55, 134, 212
LweI	GCATC	2 cut(s)	256, 298
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	42
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	3 cut(s)	166, 195, 215
MseI	TTAA	2 cut(s)	162, 210
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	1 cut(s)	181
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	217, 338
NspI	RCATGY	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	238
PflFI	GACNNNGTC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	162, 210
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	4 cut(s)	10, 45, 142, 256
SfaNI	GCATC	2 cut(s)	256, 298
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	167, 304
TaiI	ACGT	1 cut(s)	45
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	162, 210
Tru9I	TTAA	2 cut(s)	162, 210
TscAI	CASTG	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.