FvH4_7g13150

Xyloglucan endotransglucosylase hydrolase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014798
Physical Location & Seq
Reverse (-)
11846415 .. 11847933
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13150.t1

Sequence Viewer

Length: 648 bp
ATGGCAGACCCAGCACTCCACCCCGAGACTCCCTCTCACCACAAAACCCAACCCCTCAAGCAGATCGCCATAGACTACACCCCAGACGCCTGCACACACTTCACCGACTCCAACACCATCACAGTCACCTTCGACCACCGCGGCGGCGCCAGGTGGCGCACCCCCACCCGTTTCCTCTATGGCACCTTCAGCGCCCTCATCCAGTGCCCAAGTGGCAACACCAGCGGCCTCAACTTCAACCTCTACCTCTCCTCCCTAGAAGGTGACAAGTCCCAGGACGAGATCGACTTCGAGTTTCTAGGTAAAGACATGACCATTGTCCAGACCAACTACTACACTGAAGGGGCTGGAAACAAAGAAGCGATCCATGACCTAGGGTTCAACTGTTCCGAAGGGTTCCATGAGTATGTGATTAAGTGGAGTAAGGATGTGATCGAGTGGTTTATAAATGGGAAAATGGTGAGGAGGGTTGAGAGAAAAGAGGGTGAGGGTTTTCCAAACAAGCCTATGTATTTGTATTCTTCGGTTTGGGATGCTAGCTATATTGATAAGGGGAGGTGGACTGGGAAGTACGTTGGATGCGATGTGCCTTATGTTTGTGTTTATAAGGATATTCATGTCCCTCTTGAGACTGCTGTGGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0009888 GO:0010087 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0032502 GO:0046527 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16

Protein Analysis

216

Amino Acids

24.5

Weight (kDa)

5.34

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 26 - 183 2.3e-41 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 446, 606
AccB1I GGYRCC 2 cut(s) 146, 182
AccII CGCG 1 cut(s) 141
AciI CCGC 4 cut(s) 139, 141, 144, 225
AclWI GGATC 1 cut(s) 358
AcuI CTGAAG 2 cut(s) 172, 360
AcyI GRCGYC 2 cut(s) 87, 147
AfaI GTAC 1 cut(s) 572
AgsI TTSAA 2 cut(s) 238, 382
AjnI CCWGG 2 cut(s) 149, 273
AluBI AGCT 1 cut(s) 540
AluI AGCT 1 cut(s) 540
Alw26I GTCTC 2 cut(s) 20, 623
AlwI GGATC 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 226
AspA2I CCTAGG 1 cut(s) 373
AspLEI GCGC 3 cut(s) 149, 159, 194
AsuHPI GGTGA 6 cut(s) 29, 94, 118, 275, 472, 497
AsuNHI GCTAGC 1 cut(s) 536
AvaI CYCGRG 1 cut(s) 23
AvrII CCTAGG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 2 cut(s) 146, 182
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 2 cut(s) 151, 275
BcoDI GTCTC 2 cut(s) 20, 623
BfaI CTAG 4 cut(s) 257, 299, 374, 537
BfoI RGCGCY 2 cut(s) 150, 195
BglI GCCNNNNNGGC 1 cut(s) 213
BisI GCNGC 3 cut(s) 142, 145, 226
BlnI CCTAGG 1 cut(s) 373
BlsI GCNGC 3 cut(s) 143, 146, 227
Bme1390I CCNGG 2 cut(s) 151, 275
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 148, 184, 398
BmrFI CCNGG 2 cut(s) 151, 275
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 523, 569
BmtI GCTAGC 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 573
BoxI GACNNNNGTC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpuEI CTTGAG 2 cut(s) 41, 647
BsaHI GRCGYC 2 cut(s) 87, 147
BsaJI CCNNGG 3 cut(s) 139, 273, 373
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse1I ACTGG 2 cut(s) 202, 568
BseBI CCWGG 2 cut(s) 151, 275
BseDI CCNNGG 3 cut(s) 139, 273, 373
BseGI GGATG 4 cut(s) 198, 433, 538, 584
BseNI ACTGG 2 cut(s) 202, 568
BseRI GAGGAG 2 cut(s) 241, 478
BseSI GKGCMC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 2 cut(s) 146, 182
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 256, 605
BsmAI GTCTC 2 cut(s) 20, 623
BsmFI GGGAC 2 cut(s) 256, 605
BsnI GGCC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 63, 282, 363, 432
BspACI CCGC 4 cut(s) 139, 141, 144, 225
BspANI GGCC 1 cut(s) 228
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 148, 184, 398
BspOI GCTAGC 1 cut(s) 540
BspPI GGATC 1 cut(s) 358
BspT107I GGYRCC 2 cut(s) 146, 182
BsrI ACTGG 2 cut(s) 202, 568
BssECI CCNNGG 3 cut(s) 139, 273, 373
BssMI GATC 4 cut(s) 63, 282, 363, 432
BssNI GRCGYC 2 cut(s) 87, 147
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 2 cut(s) 151, 275
Bst4CI ACNGT 2 cut(s) 124, 386
BstACI GRCGYC 2 cut(s) 87, 147
BstC8I GCNNGC 2 cut(s) 91, 538
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 4 cut(s) 198, 433, 538, 584
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 2 cut(s) 150, 195
BstHHI GCGC 3 cut(s) 149, 159, 194
BstKTI GATC 4 cut(s) 66, 285, 366, 435
BstMAI GTCTC 2 cut(s) 20, 623
BstMBI GATC 4 cut(s) 63, 282, 363, 432
BstMWI GCNNNNNNNGC 4 cut(s) 11, 189, 213, 222
BstNI CCWGG 2 cut(s) 151, 275
BstPAI GACNNNNGTC 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 149, 273
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 597
BtsCI GGATG 4 cut(s) 198, 433, 538, 584
BtsIMutI CAGTG 2 cut(s) 209, 336
Cac8I GCNNGC 2 cut(s) 91, 538
CfoI GCGC 3 cut(s) 149, 159, 194
Cfr42I CCGCGG 1 cut(s) 142
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 571
CviAII CATG 4 cut(s) 310, 368, 401, 617
CviJI RGCY 4 cut(s) 228, 347, 505, 540
CviKI_1 RGCY 4 cut(s) 228, 347, 505, 540
CviQI GTAC 1 cut(s) 571
DinI GGCGCC 1 cut(s) 148
DpnI GATC 4 cut(s) 65, 284, 365, 434
DpnII GATC 4 cut(s) 63, 282, 363, 432
Eco130I CCWWGG 1 cut(s) 373
Eco57I CTGAAG 2 cut(s) 172, 360
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 149, 273
EcoT14I CCWWGG 1 cut(s) 373
EgeI GGCGCC 1 cut(s) 148
EheI GGCGCC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 4 cut(s) 313, 371, 404, 620
FaqI GGGAC 2 cut(s) 256, 605
FatI CATG 4 cut(s) 309, 367, 400, 616
Fnu4HI GCNGC 3 cut(s) 142, 145, 226
FokI GGATG 4 cut(s) 185, 440, 545, 591
Fsp4HI GCNGC 3 cut(s) 142, 145, 226
FspBI CTAG 4 cut(s) 257, 299, 374, 537
GlaI GCGC 3 cut(s) 148, 158, 193
GluI GCNGC 3 cut(s) 142, 145, 226
GsaI CCCAGC 1 cut(s) 14
HaeII RGCGCY 2 cut(s) 150, 195
HaeIII GGCC 1 cut(s) 228
HgaI GACGC 1 cut(s) 95
HhaI GCGC 3 cut(s) 149, 159, 194
Hin1I GRCGYC 2 cut(s) 87, 147
Hin1II CATG 4 cut(s) 313, 371, 404, 620
Hin6I GCGC 3 cut(s) 147, 157, 192
HinP1I GCGC 3 cut(s) 147, 157, 192
HinfI GANTC 2 cut(s) 28, 107
HphI GGTGA 6 cut(s) 29, 94, 118, 275, 472, 497
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 2 cut(s) 322, 626
Hpy8I GTNNAC 1 cut(s) 561
HpyAV CCTTC 5 cut(s) 139, 196, 254, 335, 386
HpyCH4III ACNGT 2 cut(s) 124, 386
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 189, 213, 222
HpySE526I ACGT 1 cut(s) 573
Hsp92I GRCGYC 2 cut(s) 87, 147
Hsp92II CATG 4 cut(s) 313, 371, 404, 620
HspAI GCGC 3 cut(s) 147, 157, 192
KasI GGCGCC 1 cut(s) 146
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 4 cut(s) 63, 282, 363, 432
LweI GCATC 2 cut(s) 523, 569
MaeI CTAG 4 cut(s) 257, 299, 374, 537
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 2 cut(s) 124, 263
MalI GATC 4 cut(s) 65, 284, 365, 434
MboI GATC 4 cut(s) 63, 282, 363, 432
MboII GAAGA 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 209
Mly113I GGCGCC 1 cut(s) 147
MlyI GAGTC 2 cut(s) 22, 101
MmeI TCCRAC 2 cut(s) 135, 556
MseI TTAA 2 cut(s) 414, 646
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 2 cut(s) 141, 225
MspR9I CCNGG 2 cut(s) 151, 275
MvaI CCWGG 2 cut(s) 151, 275
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 11, 189, 213, 222
NarI GGCGCC 1 cut(s) 147
NdeII GATC 4 cut(s) 63, 282, 363, 432
NheI GCTAGC 1 cut(s) 536
NlaIII CATG 4 cut(s) 313, 371, 404, 620
NlaIV GGNNCC 3 cut(s) 148, 184, 398
NmuCI GTSAC 2 cut(s) 124, 263
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PkrI GCNGC 3 cut(s) 143, 146, 227
PleI GAGTC 2 cut(s) 22, 101
PluTI GGCGCC 1 cut(s) 150
PpsI GAGTC 2 cut(s) 22, 101
PshAI GACNNNNGTC 1 cut(s) 317
PsiI TTATAA 2 cut(s) 446, 606
Psp6I CCWGG 2 cut(s) 149, 273
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 2 cut(s) 149, 273
PspN4I GGNNCC 3 cut(s) 148, 184, 398
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 405
SacII CCGCGG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 414, 646
SatI GCNGC 3 cut(s) 142, 145, 226
Sau3AI GATC 4 cut(s) 63, 282, 363, 432
SchI GAGTC 2 cut(s) 22, 101
ScrFI CCNGG 2 cut(s) 151, 275
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 2 cut(s) 523, 569
SfoI GGCGCC 1 cut(s) 148
Sfr303I CCGCGG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 56, 626
SmoI CTYRAG 2 cut(s) 56, 626
SsiI CCGC 4 cut(s) 139, 141, 144, 225
SspDI GGCGCC 1 cut(s) 146
SspMI CTAG 4 cut(s) 257, 299, 374, 537
StyD4I CCNGG 2 cut(s) 149, 273
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 124, 386
TaiI ACGT 1 cut(s) 576
TaqI TCGA 4 cut(s) 132, 285, 291, 435
TauI GCSGC 3 cut(s) 144, 147, 228
Tru1I TTAA 2 cut(s) 414, 646
Tru9I TTAA 2 cut(s) 414, 646
TscAI CASTG 2 cut(s) 209, 343
TseFI GTSAC 2 cut(s) 124, 263
Tsp45I GTSAC 2 cut(s) 124, 263
TspDTI ATGAA 1 cut(s) 605
TspRI CASTG 2 cut(s) 209, 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 373
XspI CTAG 4 cut(s) 257, 299, 374, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.