DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g13150 |
| prunus_persica | Prupe.2G154800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0352281 |
| rosa_laevigata | RLG00000028344 RLG00000032851 |
| rosa_multiflora | Rmu_sc0003774.1_g000002 |
| rosa_roxburghii | Rroxscaffold_152G00434490 Rroxscaffold_3G00222460 |
| rosa_rugosa | Rorug01G0211800 Rorug01G0226400 |
| rosa_samantha | Rh1AG240900 Rh1BG211700 Rh1CG224700 Rh1DG238100 Rh5CG506400 Rh5CG506600 |
| rosa_wichuraiana | Rw1G020860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 13 |
| AcsI | RAATTY | 1 cut(s) | 245 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 189 |
| AgsI | TTSAA | 2 cut(s) | 29, 169 |
| AhlI | ACTAGT | 1 cut(s) | 196 |
| AluBI | AGCT | 2 cut(s) | 8, 293 |
| AluI | AGCT | 2 cut(s) | 8, 293 |
| Alw26I | GTCTC | 1 cut(s) | 150 |
| ApoI | RAATTY | 1 cut(s) | 245 |
| AsuC2I | CCSGG | 1 cut(s) | 153 |
| AsuHPI | GGTGA | 1 cut(s) | 62 |
| BcnI | CCSGG | 1 cut(s) | 153 |
| BcoDI | GTCTC | 1 cut(s) | 150 |
| BcuI | ACTAGT | 1 cut(s) | 196 |
| BfaI | CTAG | 2 cut(s) | 189, 197 |
| Bme1390I | CCNGG | 1 cut(s) | 153 |
| BmiI | GGNNCC | 1 cut(s) | 180 |
| BmrFI | CCNGG | 1 cut(s) | 153 |
| BmrI | ACTGGG | 1 cut(s) | 255 |
| BmsI | GCATC | 2 cut(s) | 52, 98 |
| BmuI | ACTGGG | 1 cut(s) | 255 |
| BpuEI | CTTGAG | 1 cut(s) | 90 |
| BpuMI | CCSGG | 1 cut(s) | 153 |
| BsaI | GGTCTC | 1 cut(s) | 150 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 189 |
| Bse1I | ACTGG | 1 cut(s) | 261 |
| BseGI | GGATG | 2 cut(s) | 89, 315 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 189 |
| BseNI | ACTGG | 1 cut(s) | 261 |
| BsiSI | CCGG | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 189 |
| BsmAI | GTCTC | 1 cut(s) | 150 |
| Bso31I | GGTCTC | 1 cut(s) | 150 |
| BspLI | GGNNCC | 1 cut(s) | 180 |
| BspQI | GCTCTTC | 1 cut(s) | 119 |
| BspTNI | GGTCTC | 1 cut(s) | 150 |
| BsrI | ACTGG | 1 cut(s) | 261 |
| Bst6I | CTCTTC | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 67 |
| BstDEI | CTNAG | 2 cut(s) | 289, 315 |
| BstF5I | GGATG | 2 cut(s) | 89, 315 |
| BstMAI | GTCTC | 1 cut(s) | 150 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 290 |
| BstSCI | CCNGG | 1 cut(s) | 151 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 268 |
| BtsCI | GGATG | 2 cut(s) | 89, 315 |
| BtsIMutI | CAGTG | 1 cut(s) | 268 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 67 |
| CviAII | CATG | 2 cut(s) | 185, 235 |
| CviJI | RGCY | 3 cut(s) | 8, 272, 293 |
| CviKI_1 | RGCY | 3 cut(s) | 8, 272, 293 |
| DdeI | CTNAG | 2 cut(s) | 289, 315 |
| Eam1104I | CTCTTC | 1 cut(s) | 119 |
| EarI | CTCTTC | 1 cut(s) | 119 |
| Eco31I | GGTCTC | 1 cut(s) | 150 |
| FaeI | CATG | 2 cut(s) | 188, 238 |
| FaiI | YATR | 5 cut(s) | 71, 80, 146, 186, 236 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 298 |
| FatI | CATG | 2 cut(s) | 184, 234 |
| FblI | GTMKAC | 1 cut(s) | 13 |
| FokI | GGATG | 1 cut(s) | 76 |
| FspBI | CTAG | 2 cut(s) | 189, 197 |
| HapII | CCGG | 1 cut(s) | 152 |
| Hin1II | CATG | 2 cut(s) | 188, 238 |
| HinfI | GANTC | 2 cut(s) | 41, 103 |
| HpaII | CCGG | 1 cut(s) | 152 |
| HphI | GGTGA | 1 cut(s) | 62 |
| Hpy166II | GTNNAC | 1 cut(s) | 14 |
| Hpy188I | TCNGA | 1 cut(s) | 76 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 107 |
| Hpy8I | GTNNAC | 1 cut(s) | 14 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 65, 89, 116, 284 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 290 |
| HpyF3I | CTNAG | 2 cut(s) | 289, 315 |
| Hsp92II | CATG | 2 cut(s) | 188, 238 |
| LguI | GCTCTTC | 1 cut(s) | 119 |
| LpnPI | CCDG | 5 cut(s) | 20, 51, 97, 165, 274 |
| LweI | GCATC | 2 cut(s) | 52, 98 |
| MaeI | CTAG | 2 cut(s) | 189, 197 |
| MaeIII | GTNAC | 2 cut(s) | 50, 100 |
| MboII | GAAGA | 4 cut(s) | 133, 136, 181, 230 |
| MluCI | AATT | 2 cut(s) | 239, 245 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MnlI | CCTC | 1 cut(s) | 103 |
| MseI | TTAA | 2 cut(s) | 20, 249 |
| MspI | CCGG | 1 cut(s) | 152 |
| MspR9I | CCNGG | 1 cut(s) | 153 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 290 |
| NciI | CCSGG | 1 cut(s) | 153 |
| NlaIII | CATG | 2 cut(s) | 188, 238 |
| NlaIV | GGNNCC | 1 cut(s) | 180 |
| NmuCI | GTSAC | 2 cut(s) | 50, 100 |
| PciSI | GCTCTTC | 1 cut(s) | 119 |
| PfeI | GAWTC | 1 cut(s) | 41 |
| PleI | GAGTC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 97 |
| PspN4I | GGNNCC | 1 cut(s) | 180 |
| SapI | GCTCTTC | 1 cut(s) | 119 |
| SaqAI | TTAA | 2 cut(s) | 20, 249 |
| SchI | GAGTC | 1 cut(s) | 97 |
| ScrFI | CCNGG | 1 cut(s) | 153 |
| SetI | ASST | 3 cut(s) | 10, 19, 295 |
| SfaNI | GCATC | 2 cut(s) | 52, 98 |
| SmlI | CTYRAG | 1 cut(s) | 105 |
| SmoI | CTYRAG | 1 cut(s) | 105 |
| SpeI | ACTAGT | 1 cut(s) | 196 |
| Sse9I | AATT | 2 cut(s) | 239, 245 |
| SspMI | CTAG | 2 cut(s) | 189, 197 |
| StyD4I | CCNGG | 1 cut(s) | 151 |
| TaqI | TCGA | 1 cut(s) | 209 |
| TasI | AATT | 2 cut(s) | 239, 245 |
| TfiI | GAWTC | 1 cut(s) | 41 |
| Tru1I | TTAA | 2 cut(s) | 20, 249 |
| Tru9I | TTAA | 2 cut(s) | 20, 249 |
| TscAI | CASTG | 1 cut(s) | 268 |
| TseFI | GTSAC | 2 cut(s) | 50, 100 |
| Tsp45I | GTSAC | 2 cut(s) | 50, 100 |
| TspRI | CASTG | 1 cut(s) | 268 |
| XapI | RAATTY | 1 cut(s) | 245 |
| XmiI | GTMKAC | 1 cut(s) | 13 |
| XspI | CTAG | 2 cut(s) | 189, 197 |