Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014798

Physical Location & Seq

Genomic Coordinates Reverse (-)

20840328 .. 20840972

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G154800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCAGACCCAGCGCTACACCCAGAGACCCCAACCCACCACCAAACCCAACCCCTCAAGCAAATCGCCATAGACTACACCCCGGAGGCCTGTACACACTGCCCAGACGCCAACACCATCACCCTCACCTACGACCACCGCGGCGGTGCACGGTGGCGCACCACCACAAGGTTCCTCTACGGCACCTTCAGCTCCCTCATTCAGTGCCCACGTGGCAACACCAGCGGCCTCAACTTCAACATCTACCTCTCGTCCCTGGAAGGTGACAAGTCACAGGACGAGATTGACTTCGAGTTTTTGGGCAAGGACAGGACAATTGTGCAGACTAACTATTACACTGGCGGCACAGGTAACAAAGAGGAGTTTCATGATCTGGGTTTTGATTGTTCTGATGGGTTTCATTTGTATGTGATCAAATGGGGTCAGGATTTGATTGAGTGGTTGGTTGATGGGAAATTGGTGAGGGTAGAGAGGAAAAAGGGTGAGGCTTTTCCTCACAAGCCTATGTATTTGTATGCTTCTGTTTGGGATGCTAGTTATATTGAGGAGGGGAGGTGGACTGGCAAGTACATTGGGTGTGATGCGCCTTATGTTTGCCTCTATAAGGACATTCATGTTCCTGTTGGAAGTGCTGTGGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009888 GO:0010087 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0032502 GO:0046527 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16

Protein Analysis

215

Amino Acids

24.27

Weight (kDa)

5.41

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014798)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13150
prunus_persica	Prupe.2G154800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352281
rosa_laevigata	RLG00000028344 RLG00000032851
rosa_multiflora	Rmu_sc0003774.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434490 Rroxscaffold_3G00222460
rosa_rugosa	Rorug01G0211800 Rorug01G0226400
rosa_samantha	Rh1AG240900 Rh1BG211700 Rh1CG224700 Rh1DG238100 Rh5CG506400 Rh5CG506600
rosa_wichuraiana	Rw1G020860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	1 cut(s)	141
AciI	CCGC	5 cut(s)	139, 141, 144, 225, 342
AcuI	CTGAAG	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	2 cut(s)	94, 569
AfeI	AGCGCT	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	168, 604
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	15
AoxI	GGCC	2 cut(s)	87, 226
ApaLI	GTGCAC	1 cut(s)	147
AspLEI	GCGC	3 cut(s)	16, 159, 586
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	5 cut(s)	112, 118, 275, 472, 494
BaeGI	GKGCMC	2 cut(s)	151, 209
BanI	GGYRCC	1 cut(s)	182
BbrPI	CACGTG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	151
BccI	CCATC	3 cut(s)	125, 386, 443
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	142, 226, 343
BlsI	GCNGC	3 cut(s)	143, 227, 344
Bme1390I	CCNGG	2 cut(s)	83, 257
BmiI	GGNNCC	2 cut(s)	173, 184
BmrFI	CCNGG	2 cut(s)	83, 257
BmsI	GCATC	2 cut(s)	520, 571
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	81, 139, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 604
Bse1I	ACTGG	2 cut(s)	343, 565
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	81, 139, 255
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	2 cut(s)	168, 604
BseNI	ACTGG	2 cut(s)	343, 565
BseRI	GAGGAG	2 cut(s)	374, 560
BseSI	GKGCMC	2 cut(s)	151, 209
BseYI	CCCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	89, 228
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	168, 604
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	89, 228
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	151, 209
Bsp1407I	TGTACA	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	370, 411
BspACI	CCGC	5 cut(s)	139, 141, 144, 225, 342
BspANI	GGCC	2 cut(s)	89, 228
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	173, 184
BspT107I	GGYRCC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	343, 565
BssECI	CCNNGG	3 cut(s)	81, 139, 255
BssMI	GATC	2 cut(s)	370, 411
BssNI	GRCGYC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	3 cut(s)	16, 159, 586
BstKTI	GATC	2 cut(s)	373, 414
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	370, 411
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 189, 213, 222
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	81, 255
BstSLI	GKGCMC	2 cut(s)	151, 209
BstUI	CGCG	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	89, 228
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	3 cut(s)	97, 209, 336
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	3 cut(s)	16, 159, 586
Cfr42I	CCGCGG	1 cut(s)	142
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	93, 568
CviAII	CATG	2 cut(s)	368, 614
CviJI	RGCY	5 cut(s)	89, 192, 228, 488, 502
CviKI_1	RGCY	5 cut(s)	89, 192, 228, 488, 502
CviQI	GTAC	2 cut(s)	93, 568
DpnI	GATC	2 cut(s)	372, 413
DpnII	GATC	2 cut(s)	370, 411
Eco147I	AGGCCT	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	172
Eco72I	CACGTG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	371, 617
FaiI	YATR	9 cut(s)	71, 369, 408, 506, 516, 540, 591, 603, 615
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	367, 613
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	142, 226, 343
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	3 cut(s)	142, 226, 343
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	3 cut(s)	15, 158, 585
GluI	GCNGC	3 cut(s)	142, 226, 343
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	89, 228
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	3 cut(s)	16, 159, 586
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	371, 617
Hin6I	GCGC	3 cut(s)	14, 157, 584
HinP1I	GCGC	3 cut(s)	14, 157, 584
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	5 cut(s)	112, 118, 275, 472, 494
Hpy166II	GTNNAC	3 cut(s)	95, 149, 558
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	2 cut(s)	368, 425
Hpy8I	GTNNAC	3 cut(s)	95, 149, 558
HpyAV	CCTTC	2 cut(s)	196, 254
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	149, 322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 189, 213, 222
HpySE526I	ACGT	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	371, 617
HspAI	GCGC	3 cut(s)	14, 157, 584
Ksp22I	TGATCA	1 cut(s)	411
KspI	CCGCGG	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	370, 411
LmnI	GCTCC	1 cut(s)	197
LweI	GCATC	2 cut(s)	520, 571
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	3 cut(s)	263, 270, 350
MalI	GATC	2 cut(s)	372, 413
MboI	GATC	2 cut(s)	370, 411
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	151, 209
MluCI	AATT	2 cut(s)	315, 455
MmeI	TCCRAC	1 cut(s)	604
MseI	TTAA	1 cut(s)	643
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	141, 225
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	83, 257
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	11, 189, 213, 222
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	370, 411
NlaIII	CATG	2 cut(s)	371, 617
NlaIV	GGNNCC	2 cut(s)	173, 184
NmuCI	GTSAC	2 cut(s)	263, 270
PagI	TCATGA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	143, 227, 344
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	173, 184
RsaI	GTAC	2 cut(s)	94, 569
RsaNI	GTAC	2 cut(s)	93, 568
RseI	CAYNNNNRTG	1 cut(s)	405
SacII	CCGCGG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	643
SatI	GCNGC	3 cut(s)	142, 226, 343
Sau3AI	GATC	2 cut(s)	370, 411
ScrFI	CCNGG	2 cut(s)	83, 257
SduI	GDGCHC	2 cut(s)	151, 209
SetI	ASST	9 cut(s)	131, 173, 188, 194, 214, 249, 265, 352, 557
SfaNI	GCATC	2 cut(s)	520, 571
Sfr303I	CCGCGG	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	315, 455
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	5 cut(s)	139, 141, 144, 225, 342
SspMI	CTAG	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	81, 255
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	315, 455
TatI	WGTACW	2 cut(s)	92, 567
TauI	GCSGC	3 cut(s)	144, 228, 345
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	3 cut(s)	104, 209, 343
TseFI	GTSAC	2 cut(s)	263, 270
Tsp45I	GTSAC	2 cut(s)	263, 270
TspDTI	ATGAA	3 cut(s)	356, 389, 602
TspRI	CASTG	3 cut(s)	104, 209, 343
VneI	GTGCAC	1 cut(s)	147
XagI	CCTNNNNNAGG	1 cut(s)	602
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.