Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0014798

Physical Location & Seq

Genomic Coordinates Reverse (-)

4506 .. 13016

Gene Structure 8511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGAGTGAATAGTCAAACAAAACAAAGGCAAAGAGAGTTTGGGAATTTCGATATATTGATCTTCTTCAAAGACGAAGTATATGTACAAAGTATACACAATCCTAATAGAAAACTAATGACACCTTCCGGCTACTCCTCACCACGCACCTTCGACGGTGAACTCGGAGGGAGTCGATCTGTCCAATTTCCGGTTCGAAACCCCAAAGTGCGGCTTCGTGGATCACTACGTAGCTCTGCCCCGGATTTCCGGGCTGCTCAAGTAGACAATTCTATACCTTTTCTTGATGCTATATTGACGAGGGGAGGTGGTGGGAAGTACGTTGGGTGCGATGTGCCTTATGTTTGTGTGTATAAGGATATTCATGTCCCTGCTGAGAGTGTTGTGGAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0009888 GO:0010087 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0032502 GO:0046527 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16

Protein Analysis

131

Amino Acids

14.64

Weight (kDa)

9.46

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014798)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13150
prunus_persica	Prupe.2G154800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352281
rosa_laevigata	RLG00000028344 RLG00000032851
rosa_multiflora	Rmu_sc0003774.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434490 Rroxscaffold_3G00222460
rosa_rugosa	Rorug01G0211800 Rorug01G0226400
rosa_samantha	Rh1AG240900 Rh1BG211700 Rh1CG224700 Rh1DG238100 Rh5CG506400 Rh5CG506600
rosa_wichuraiana	Rw1G020860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	94, 264
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	2 cut(s)	87, 320
AfiI	CCNNNNNNNGG	2 cut(s)	190, 210
AgsI	TTSAA	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
AlwI	GGATC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	46
AsuC2I	CCSGG	2 cut(s)	242, 251
AsuHPI	GGTGA	2 cut(s)	132, 170
AsuII	TTCGAA	1 cut(s)	196
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BbvI	GCAGC	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	242, 251
BisI	GCNGC	2 cut(s)	212, 255
BlsI	GCNGC	2 cut(s)	213, 256
Bme1390I	CCNGG	2 cut(s)	242, 251
BmrFI	CCNGG	2 cut(s)	242, 251
BmsI	GCATC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	242, 251
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 210
BseDI	CCNNGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	190, 210
BseMII	CTCAG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	241
BsiSI	CCGG	4 cut(s)	129, 191, 242, 250
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	190, 210
BsmFI	GGGAC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	60, 176, 221
BspACI	CCGC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	367
BspPI	GGATC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	60, 176, 221
BssNAI	GTATAC	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	375
BstKTI	GATC	3 cut(s)	63, 179, 224
BstMBI	GATC	3 cut(s)	60, 176, 221
BstSCI	CCNGG	2 cut(s)	240, 249
BstSNI	TACGTA	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	241
BstZ17I	GTATAC	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	86, 319
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	4 cut(s)	132, 214, 234, 254
CviKI_1	RGCY	4 cut(s)	132, 214, 234, 254
CviQI	GTAC	2 cut(s)	86, 319
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	3 cut(s)	62, 178, 223
DpnII	GATC	3 cut(s)	60, 176, 221
Eco105I	TACGTA	1 cut(s)	230
FaeI	CATG	1 cut(s)	368
FaiI	YATR	9 cut(s)	56, 82, 84, 95, 275, 293, 342, 354, 366
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	364
FblI	GTMKAC	2 cut(s)	94, 264
Fnu4HI	GCNGC	2 cut(s)	212, 255
Fsp4HI	GCNGC	2 cut(s)	212, 255
GluI	GCNGC	2 cut(s)	212, 255
HapII	CCGG	4 cut(s)	129, 191, 242, 250
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	4 cut(s)	129, 191, 242, 250
HphI	GGTGA	2 cut(s)	132, 170
Hpy166II	GTNNAC	3 cut(s)	95, 161, 265
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	3 cut(s)	95, 161, 265
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	135, 160
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	229, 321
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	229, 321
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	3 cut(s)	60, 176, 221
LpnPI	CCDG	5 cut(s)	142, 204, 255, 263, 384
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	2 cut(s)	229, 321
MalI	GATC	3 cut(s)	62, 178, 223
MboI	GATC	3 cut(s)	60, 176, 221
MboII	GAAGA	2 cut(s)	55, 58
MluCI	AATT	3 cut(s)	46, 185, 268
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	148, 161, 294, 299, 382
MseI	TTAA	1 cut(s)	394
MspI	CCGG	4 cut(s)	129, 191, 242, 250
MspR9I	CCNGG	2 cut(s)	242, 251
NciI	CCSGG	2 cut(s)	242, 251
NdeII	GATC	3 cut(s)	60, 176, 221
NlaIII	CATG	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	213, 256
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Ppu21I	YACGTR	1 cut(s)	230
RsaI	GTAC	2 cut(s)	87, 320
RsaNI	GTAC	2 cut(s)	86, 319
SaqAI	TTAA	1 cut(s)	394
SatI	GCNGC	2 cut(s)	212, 255
Sau3AI	GATC	3 cut(s)	60, 176, 221
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	242, 251
SetI	ASST	7 cut(s)	127, 152, 232, 236, 280, 310, 324
SfaNI	GCATC	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SnaBI	TACGTA	1 cut(s)	230
Sse9I	AATT	3 cut(s)	46, 185, 268
SsiI	CCGC	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	240, 249
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	2 cut(s)	232, 324
TaqI	TCGA	4 cut(s)	51, 153, 175, 196
TasI	AATT	3 cut(s)	46, 185, 268
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	394
Tru9I	TTAA	1 cut(s)	394
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	353
XapI	RAATTY	1 cut(s)	46
XmiI	GTMKAC	2 cut(s)	94, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.