Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0022267

Physical Location & Seq

Genomic Coordinates Reverse (-)

17341716 .. 17342972

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGTTCAAGGCCACCCAGGTTTTGACAAGCATTGAACCTGATTTAAGCGCCTCATTAAGGATCAAAATGACCACTCTGATCTGGAGGAGTGTATTAGAAGGCTTGTTATTTGCTCTGGGAAGATTTACTATGAGATTGATGAGGAGCGAAGAAAGGCCAATGCAAAGGACGTTGCAATATGTAGAGTGGAACAGCTTTGCCCCTTCCCATATGACCTCATCCAGTGAGAGACACAAGCAGGGGTATAAATGTATTCACCAGGAAGTTGATGCTGAGATAGTTTGGTGCCAGGAAGAGCCAATGAACATGGTTGCCTACAACTGCATTGCACCTCGCGTACGCACTGCCATGAAGTTGTTGAGCAGAGGAACTATCGATGACATCAAATACATTGGCCGTGCTCCATCTGCTGCCACAGCCACCGGTTTCTATCAATTTCACCTCAAGGAACAAGCAGACATTGTGCATAAATCAGTGCAGCCGGAGCCAATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

167

Amino Acids

19.11

Weight (kDa)

8.47

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OxoGdeHyase_C	PF16870	92 - 158	6.4e-17	2-oxoglutarate dehydrogenase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21780
malus_domestica	MD02G1281400.v1.1
pyrus_communis	pycom02g24060
rosa_samantha	Rh1CG312500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	288
AccII	CGCG	1 cut(s)	339
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	397
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	10, 38
AjnI	CCWGG	3 cut(s)	18, 261, 291
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	3 cut(s)	12, 158, 397
ApeKI	GCWGC	2 cut(s)	413, 481
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	251, 434
BanI	GGYRCC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	400, 493
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	3 cut(s)	20, 263, 293
BcoDI	GTCTC	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	2 cut(s)	414, 482
BlsI	GCNGC	2 cut(s)	415, 483
Bme1390I	CCNGG	3 cut(s)	20, 263, 293
BmiI	GGNNCC	2 cut(s)	290, 489
BmrFI	CCNGG	3 cut(s)	20, 263, 293
BmsI	GCATC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	431
Bsa29I	ATCGAT	2 cut(s)	378, 495
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	3 cut(s)	20, 263, 293
BseCI	ATCGAT	2 cut(s)	378, 495
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	103, 160
BseXI	GCAGC	2 cut(s)	400, 493
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	14, 160, 399
BshNI	GGYRCC	1 cut(s)	288
BshTI	ACCGGT	1 cut(s)	425
BshVI	ATCGAT	2 cut(s)	378, 495
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	426, 485
BsiWI	CGTACG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	14, 160, 399
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	63, 81
BspANI	GGCC	3 cut(s)	14, 160, 399
BspCNI	CTCAG	1 cut(s)	268
BspDI	ATCGAT	2 cut(s)	378, 495
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	290, 489
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	63, 81
Bst2UI	CCWGG	3 cut(s)	20, 263, 293
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	66, 84
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	2 cut(s)	63, 81
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 419, 487
BstNI	CCWGG	3 cut(s)	20, 263, 293
BstSCI	CCNGG	3 cut(s)	18, 261, 291
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	400, 493
Bsu15I	ATCGAT	2 cut(s)	378, 495
BsuRI	GGCC	3 cut(s)	14, 160, 399
BsuTUI	ATCGAT	2 cut(s)	378, 495
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	232, 345, 483
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	425
ClaI	ATCGAT	2 cut(s)	378, 495
Csp6I	GTAC	1 cut(s)	341
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	2 cut(s)	310, 352
CviJI	RGCY	9 cut(s)	14, 105, 160, 198, 301, 399, 422, 484, 490
CviKI_1	RGCY	9 cut(s)	14, 105, 160, 198, 301, 399, 422, 484, 490
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	65, 83
DpnII	GATC	2 cut(s)	63, 81
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	58
EcoRII	CCWGG	3 cut(s)	18, 261, 291
FaeI	CATG	2 cut(s)	313, 355
FaiI	YATR	8 cut(s)	134, 183, 213, 215, 249, 311, 353, 471
FatI	CATG	2 cut(s)	309, 351
FauNDI	CATATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	414, 482
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	414, 482
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	2 cut(s)	414, 482
GsuI	CTGGAG	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	14, 160, 399
HapII	CCGG	2 cut(s)	426, 485
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	313, 355
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HpaII	CCGG	2 cut(s)	426, 485
HphI	GGTGA	2 cut(s)	251, 434
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	95, 216
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	6 cut(s)	166, 178, 327, 332, 469, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 419, 487
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	313, 355
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	63, 81
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	3 cut(s)	147, 409, 487
Lsp1109I	GCAGC	2 cut(s)	400, 493
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	173
MalI	GATC	2 cut(s)	65, 83
MboI	GATC	2 cut(s)	63, 81
MboII	GAAGA	3 cut(s)	135, 164, 308
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	437
MnlI	CCTC	7 cut(s)	64, 81, 138, 229, 345, 362, 455
MseI	TTAA	3 cut(s)	47, 59, 499
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	2 cut(s)	426, 485
MspR9I	CCNGG	3 cut(s)	20, 263, 293
MvaI	CCWGG	3 cut(s)	20, 263, 293
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	410, 419, 487
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	2 cut(s)	63, 81
NlaIII	CATG	2 cut(s)	313, 355
NlaIV	GGNNCC	2 cut(s)	290, 489
PciSI	GCTCTTC	1 cut(s)	291
Pfl23II	CGTACG	1 cut(s)	340
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	415, 483
Psp6I	CCWGG	3 cut(s)	18, 261, 291
PspGI	CCWGG	3 cut(s)	18, 261, 291
PspLI	CGTACG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	290, 489
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	47, 59, 499
SatI	GCNGC	2 cut(s)	414, 482
Sau3AI	GATC	2 cut(s)	63, 81
ScrFI	CCNGG	3 cut(s)	20, 263, 293
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	7 cut(s)	24, 43, 176, 200, 221, 337, 447
SfaNI	GCATC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	437
StyD4I	CCNGG	3 cut(s)	18, 261, 291
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	378, 495
TasI	AATT	1 cut(s)	437
Tru1I	TTAA	3 cut(s)	47, 59, 499
Tru9I	TTAA	3 cut(s)	47, 59, 499
TscAI	CASTG	3 cut(s)	232, 352, 483
TseI	GCWGC	2 cut(s)	413, 481
TspDTI	ATGAA	2 cut(s)	320, 368
TspRI	CASTG	3 cut(s)	232, 352, 483
XagI	CCTNNNNNAGG	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.