Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0022267

Physical Location & Seq

Genomic Coordinates Reverse (-)

22165232 .. 22165480

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGGTTGACACACTTGTTATTGGTTCTTTCAGATGCCGAGATAGTTTGGTGTCAGGAAGAGCCGATGAACATGGGTGCGTACAACTATGTTGCACCCCGTCCTACTGCTGCCATGAAGTCCCTGGGCAGAGGAACTATTGACGATGTCAAATACATTGGCCGTGATCCATCAGCTGCCACAGCCACTGGTTTTTCTCAGGTTCATGATATGGAACAAAACGAGATTTTGCAGAAAGCGATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

83

Amino Acids

9.13

Weight (kDa)

5.13

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OxoGdeHyase_C	PF16870	13 - 81	2.9e-20	2-oxoglutarate dehydrogenase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21780
malus_domestica	MD02G1281400.v1.1
pyrus_communis	pycom02g24060
rosa_samantha	Rh1CG312500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	110, 176
BbvI	GCAGC	2 cut(s)	97, 163
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	111, 177
BlsI	GCNGC	2 cut(s)	112, 178
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	25, 231
BsaJI	CCNNGG	2 cut(s)	123, 124
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 124
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	97, 163
BshFI	GGCC	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	205
BspPI	GGATC	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	123, 124
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	97, 163
BsuRI	GGCC	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	188
CciI	TCATGA	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	73, 115, 206
CviJI	RGCY	4 cut(s)	64, 162, 176, 185
CviKI_1	RGCY	4 cut(s)	64, 162, 176, 185
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	76, 118, 209
FaiI	YATR	5 cut(s)	74, 90, 116, 207, 212
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	3 cut(s)	72, 114, 205
Fnu4HI	GCNGC	2 cut(s)	111, 177
Fsp4HI	GCNGC	2 cut(s)	111, 177
GluI	GCNGC	2 cut(s)	111, 177
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	76, 118, 209
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	56, 206
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	95, 232, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	76, 118, 209
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	41, 110, 137, 174, 185
Lsp1109I	GCAGC	2 cut(s)	97, 163
LweI	GCATC	2 cut(s)	25, 231
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	71
MnlI	CCTC	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	76, 118, 209
NmeAIII	GCCGAG	1 cut(s)	64
PagI	TCATGA	1 cut(s)	205
PasI	CCCWGGG	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	54
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	112, 178
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	54
SatI	GCNGC	2 cut(s)	111, 177
Sau3AI	GATC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	3 cut(s)	8, 178, 204
SfaNI	GCATC	2 cut(s)	25, 231
StyD4I	CCNGG	1 cut(s)	123
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	2 cut(s)	110, 176
TspDTI	ATGAA	3 cut(s)	83, 131, 194
TspRI	CASTG	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.