Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0022267

Physical Location & Seq

Genomic Coordinates Forward (+)

58618981 .. 58619785

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG312500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCCGAGTTGACAAGTGCACGAGAGGTCTTTGATAAATTGCATGAGAGACATGTTGTGGCATATAGTGCTTTGATCGCTGGTTTATCGCAAAGCGAAGATCCTAATGAACCATTGGAATTTCTTGCAGTGAGCTACATTGCATCTCGACTATACACTGCCATGAAGTCAGTGAGCAGAGGAACTGTCGATGACATCAAATATGTTAGCCGCCCTCCAATTGCCTCCACAGCTACTGGTTTCTATGAAGTTCATAGACTGAGCCAATTGATTAAACCGATCGAAGAGCCAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

99

Amino Acids

11.04

Weight (kDa)

5.3

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g21780
malus_domestica	MD02G1281400.v1.1
pyrus_communis	pycom02g24060
rosa_samantha	Rh1CG312500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	52
AluBI	AGCT	2 cut(s)	135, 233
AluI	AGCT	2 cut(s)	135, 233
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	75, 100, 279
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	75, 100, 279
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	260
BstKTI	GATC	3 cut(s)	78, 103, 282
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	3 cut(s)	75, 100, 279
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 230
BstNSI	RCATGY	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	2 cut(s)	135, 156
BtsIMutI	CAGTG	3 cut(s)	135, 156, 177
CaiI	CAGNNNCTG	1 cut(s)	236
CviAII	CATG	3 cut(s)	44, 53, 163
CviJI	RGCY	6 cut(s)	5, 135, 210, 233, 264, 289
CviKI_1	RGCY	6 cut(s)	5, 135, 210, 233, 264, 289
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	77, 102, 281
DpnII	GATC	3 cut(s)	75, 100, 279
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
FaeI	CATG	3 cut(s)	47, 56, 166
FaiI	YATR	9 cut(s)	45, 54, 64, 66, 154, 164, 204, 246, 255
FatI	CATG	3 cut(s)	43, 52, 162
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	47, 56, 166
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	12, 20
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	12, 20
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	4 cut(s)	20, 43, 128, 143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 230
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	3 cut(s)	47, 56, 166
Kzo9I	GATC	3 cut(s)	75, 100, 279
LguI	GCTCTTC	1 cut(s)	279
LpnPI	CCDG	2 cut(s)	66, 222
LweI	GCATC	1 cut(s)	152
MalI	GATC	3 cut(s)	77, 102, 281
MboI	GATC	3 cut(s)	75, 100, 279
MboII	GAAGA	2 cut(s)	110, 296
MfeI	CAATTG	3 cut(s)	219, 266, 291
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	5 cut(s)	38, 119, 219, 266, 291
MnlI	CCTC	4 cut(s)	19, 173, 225, 235
MseI	TTAA	2 cut(s)	273, 298
MslI	CAYNNNNRTG	1 cut(s)	161
MunI	CAATTG	3 cut(s)	219, 266, 291
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 230
NdeII	GATC	3 cut(s)	75, 100, 279
NlaIII	CATG	3 cut(s)	47, 56, 166
NmeAIII	GCCGAG	1 cut(s)	31
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	212
Ple19I	CGATCG	1 cut(s)	282
PscI	ACATGT	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	273, 298
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	3 cut(s)	75, 100, 279
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	3 cut(s)	30, 137, 235
SfaNI	GCATC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	5 cut(s)	38, 119, 219, 266, 291
SsiI	CCGC	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	3 cut(s)	148, 189, 282
TasI	AATT	5 cut(s)	38, 119, 219, 266, 291
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	273, 298
Tru9I	TTAA	2 cut(s)	273, 298
TscAI	CASTG	3 cut(s)	135, 163, 177
TspDTI	ATGAA	4 cut(s)	123, 179, 242, 261
TspRI	CASTG	3 cut(s)	135, 163, 177
VneI	GTGCAC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.