Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0022276

Physical Location & Seq

Genomic Coordinates Forward (+)

21847082 .. 21850748

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCCTGCCGCTAAACATGTAAGTGCAGCTACAGCTTCGACGCTACTGGATGTGATTAGTGGTTTGAACACCCTTCTATTGTATAAGAGCATGGAAGCAAAGGATGAGATCGAAAGGCTCAGGAAAGAGAATAAGGAAGATGGGGGCAAGAAGTTTTGGACCAAAGAGCTTAAAATTTATGAGAGGTGTTTGGGTTATCCATACAAGCATTATTTTGAAGTTCTAAAACTTATAAAGAGGAAAAAAGTTTTACTGTTACGGGACTTTAAATTGAGCCTTTATACCCCTACAACAGGGTCCCTTACGAGGGTTCAAATTGATGGGATTCCTTACGAGGCTAAGAAGGTTGTGGAAGGTGTCCAGATTCCAACCATTCTTTCACCTAAATACATTATCAGGGATTACATCTCCAAGAGTGAATGGTTGCGGCTCATTAGATCTACTTTTATGCATGCTTCTGGTATGGACTTTTCCATCATTGCTAAGAACAATCAGCCCCAGCAGCAGCATATTGTAGGCAGAGTTGTAGGGTTCTTACCTTATGCTGGCTGGGGCACAATTGTCGTGACTGAGAATCCAATTGTTAAGTACATTCTCTATGGCGCATTGGGGTTGCTTGCTATAACTTCAATGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

213

Amino Acids

24.13

Weight (kDa)

9.59

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29820
prunus_persica	Prupe.7G241300_v2.0.a1
rosa_multiflora	Rmu_sc0002986.1_g000006 Rmu_sc0011126.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AciI	CCGC	2 cut(s)	9, 427
AcsI	RAATTY	1 cut(s)	174
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	4 cut(s)	293, 306, 307, 545
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	67, 218, 314, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	3 cut(s)	29, 35, 169
AluI	AGCT	3 cut(s)	29, 35, 169
ApeKI	GCWGC	3 cut(s)	26, 502, 505
ApoI	RAATTY	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	159, 297
AsuHPI	GGTGA	1 cut(s)	372
AvaII	GGWCC	2 cut(s)	159, 297
BaeGI	GKGCMC	1 cut(s)	557
BbvI	GCAGC	3 cut(s)	38, 514, 517
BccI	CCATC	3 cut(s)	134, 314, 482
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BfmI	CTRYAG	1 cut(s)	30
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	5 cut(s)	9, 27, 428, 503, 506
BlsI	GCNGC	5 cut(s)	10, 28, 429, 504, 507
Bme18I	GGWCC	2 cut(s)	159, 297
BmgT120I	GGNCC	2 cut(s)	159, 297
BmiI	GGNNCC	2 cut(s)	298, 299
Bpu10I	CCTNAGC	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	4 cut(s)	293, 306, 307, 545
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	55, 109
BseLI	CCNNNNNNNGG	4 cut(s)	293, 306, 307, 545
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	133, 561
BseNI	ACTGG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	38, 514, 517
BseYI	CCCAGC	2 cut(s)	498, 549
BsgI	GTGCAG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	275, 283
BslI	CCNNNNNNNGG	4 cut(s)	293, 306, 307, 545
BsmFI	GGGAC	2 cut(s)	275, 283
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	108, 437
BspACI	CCGC	2 cut(s)	9, 427
BspCNI	CTCAG	2 cut(s)	132, 562
BspLI	GGNNCC	2 cut(s)	298, 299
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	108, 437
Bst4CI	ACNGT	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	6, 453, 547, 618
BstDEI	CTNAG	4 cut(s)	119, 339, 483, 570
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	55, 109
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	2 cut(s)	111, 440
BstMBI	GATC	2 cut(s)	108, 437
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 502
BstNSI	RCATGY	2 cut(s)	20, 455
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	3 cut(s)	38, 514, 517
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	55, 109
Cac8I	GCNNGC	4 cut(s)	6, 453, 547, 618
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	159, 297
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	3 cut(s)	17, 91, 452
CviJI	RGCY	9 cut(s)	29, 35, 118, 169, 276, 338, 430, 496, 549
CviKI_1	RGCY	9 cut(s)	29, 35, 118, 169, 276, 338, 430, 496, 549
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	4 cut(s)	119, 339, 483, 570
DpnI	GATC	2 cut(s)	110, 439
DpnII	GATC	2 cut(s)	108, 437
DraI	TTTAAA	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	159, 297
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	453
FaeI	CATG	3 cut(s)	20, 94, 455
FaqI	GGGAC	2 cut(s)	275, 283
FatI	CATG	3 cut(s)	16, 90, 451
Fnu4HI	GCNGC	5 cut(s)	9, 27, 428, 503, 506
FokI	GGATG	2 cut(s)	62, 116
Fsp4HI	GCNGC	5 cut(s)	9, 27, 428, 503, 506
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	5 cut(s)	9, 27, 428, 503, 506
GsaI	CCCAGC	2 cut(s)	502, 553
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	3 cut(s)	20, 94, 455
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HinfI	GANTC	3 cut(s)	325, 364, 574
HphI	GGTGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	121, 361, 565
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	83, 337, 347
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	26, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 502
HpyF3I	CTNAG	4 cut(s)	119, 339, 483, 570
Hsp92II	CATG	3 cut(s)	20, 94, 455
HspAI	GCGC	1 cut(s)	603
KflI	GGGWCCC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	108, 437
Lsp1109I	GCAGC	3 cut(s)	38, 514, 517
MaeIII	GTNAC	2 cut(s)	255, 565
MalI	GATC	2 cut(s)	110, 439
MboI	GATC	2 cut(s)	108, 437
MboII	GAAGA	1 cut(s)	149
MfeI	CAATTG	2 cut(s)	558, 579
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	5 cut(s)	174, 269, 315, 558, 579
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	4 cut(s)	177, 231, 300, 328
Mph1103I	ATGCAT	1 cut(s)	453
MseI	TTAA	3 cut(s)	171, 267, 585
MslI	CAYNNNNRTG	1 cut(s)	21
MunI	CAATTG	2 cut(s)	558, 579
MwoI	GCNNNNNNNGC	2 cut(s)	32, 502
NdeII	GATC	2 cut(s)	108, 437
NlaIII	CATG	3 cut(s)	20, 94, 455
NlaIV	GGNNCC	2 cut(s)	298, 299
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	453
NspI	RCATGY	2 cut(s)	20, 455
PaeI	GCATGC	1 cut(s)	455
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	325, 364, 574
PkrI	GCNGC	5 cut(s)	10, 28, 429, 504, 507
PpuMI	RGGWCCY	1 cut(s)	297
PscI	ACATGT	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	297
PspFI	CCCAGC	2 cut(s)	498, 549
PspN4I	GGNNCC	2 cut(s)	298, 299
PspPI	GGNCC	2 cut(s)	159, 297
PspPPI	RGGWCCY	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	437
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	171, 267, 585
SatI	GCNGC	5 cut(s)	9, 27, 428, 503, 506
Sau3AI	GATC	2 cut(s)	108, 437
Sau96I	GGNCC	2 cut(s)	159, 297
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	8 cut(s)	31, 37, 171, 188, 348, 358, 385, 541
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	159, 297
SmiMI	CAYNNNNRTG	1 cut(s)	21
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	5 cut(s)	174, 269, 315, 558, 579
SsiI	CCGC	2 cut(s)	9, 427
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	38, 111
TasI	AATT	5 cut(s)	174, 269, 315, 558, 579
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	2 cut(s)	11, 430
TfiI	GAWTC	3 cut(s)	325, 364, 574
Tru1I	TTAA	3 cut(s)	171, 267, 585
Tru9I	TTAA	3 cut(s)	171, 267, 585
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	26, 502, 505
Tsp45I	GTSAC	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	159, 297
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	2 cut(s)	20, 455
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.