Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002986.1

Orthogroup ID

OG0022276

Physical Location & Seq

Genomic Coordinates Forward (+)

16413 .. 22019

Gene Structure 5607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002986.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgagcaaacggggaattcccccgcccccgcgccccctgctcccgcccccgcgcccaaattcccccgcgcccccgttccccgtctggggatattatcagatgggggattccccgccccgcccccgcggatcctcacggatcgcccttaggatcatcctctcaaaactatatgaagatccaacggttggatcgtcccggatcgcccttagaatcatcctcacaaaattgtacgacgatccaatggttcatgaaagagaagatactggagaagtagatgtcctcacaaaaggagataacaattatggggatgacagacttctgtatgctcagggtcagttgtggctccaacggcaccatattatgggtagagctgtggggttcttaccctatgttggctgggtgacaattatcatgactgaaaagccaattattaagtatattctcattggcgcattggggttgcttgttataacttcaaaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

161

Amino Acids

18.11

Weight (kDa)

9.55

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022276)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29820
prunus_persica	Prupe.7G241300_v2.0.a1
rosa_multiflora	Rmu_sc0002986.1_g000006 Rmu_sc0011126.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	351
AccB7I	CCANNNNNTGG	2 cut(s)	185, 361
AccII	CGCG	4 cut(s)	31, 52, 68, 126
AciI	CCGC	9 cut(s)	23, 29, 44, 50, 66, 113, 118, 124, 126
AclWI	GGATC	8 cut(s)	123, 136, 146, 158, 170, 196, 206, 230
AcsI	RAATTY	2 cut(s)	15, 58
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	5 cut(s)	85, 86, 185, 361, 392
AgsI	TTSAA	1 cut(s)	477
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
AlwI	GGATC	8 cut(s)	123, 136, 146, 158, 170, 196, 206, 230
ApoI	RAATTY	2 cut(s)	15, 58
AspLEI	GCGC	4 cut(s)	33, 54, 70, 452
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	351
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	130, 344, 353
BmrFI	CCNGG	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 86, 185, 361, 392
Bse1I	ACTGG	1 cut(s)	268
Bse21I	CCTNAGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	3 cut(s)	153, 213, 313
BseLI	CCNNNNNNNGG	5 cut(s)	85, 86, 185, 361, 392
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	396
Bsh1236I	CGCG	4 cut(s)	31, 52, 68, 126
BshNI	GGYRCC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	5 cut(s)	85, 86, 185, 361, 392
BsmFI	GGGAC	1 cut(s)	178
Bsp143I	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
BspACI	CCGC	9 cut(s)	23, 29, 44, 50, 66, 113, 118, 124, 126
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	4 cut(s)	31, 52, 68, 126
BspHI	TCATGA	2 cut(s)	247, 411
BspLI	GGNNCC	3 cut(s)	130, 344, 353
BspPI	GGATC	8 cut(s)	123, 136, 146, 158, 170, 196, 206, 230
BspT107I	GGYRCC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
Bst4CI	ACNGT	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	146, 206, 327
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	153, 213, 313
BstFNI	CGCG	4 cut(s)	31, 52, 68, 126
BstHHI	GCGC	4 cut(s)	33, 54, 70, 452
BstKTI	GATC	7 cut(s)	131, 141, 153, 178, 191, 201, 238
BstMBI	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 349
BstSCI	CCNGG	1 cut(s)	194
BstUI	CGCG	4 cut(s)	31, 52, 68, 126
BstX2I	RGATCY	2 cut(s)	128, 175
BstYI	RGATCY	2 cut(s)	128, 175
Bsu36I	CCTNAGG	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	3 cut(s)	153, 213, 313
CciI	TCATGA	2 cut(s)	247, 411
CfoI	GCGC	4 cut(s)	33, 54, 70, 452
Cfr42I	CCGCGG	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	2 cut(s)	248, 412
CviJI	RGCY	4 cut(s)	343, 371, 396, 424
CviKI_1	RGCY	4 cut(s)	343, 371, 396, 424
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	146, 206, 327
DpnI	GATC	7 cut(s)	130, 140, 152, 177, 190, 200, 237
DpnII	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
Eco81I	CCTNAGG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	15
FaeI	CATG	2 cut(s)	251, 415
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	247, 411
FauI	CCCGC	8 cut(s)	30, 36, 51, 57, 73, 120, 125, 131
FokI	GGATG	3 cut(s)	140, 200, 320
GlaI	GCGC	4 cut(s)	32, 53, 69, 451
GsaI	CCCAGC	1 cut(s)	400
GsuI	CTGGAG	1 cut(s)	285
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	4 cut(s)	33, 54, 70, 452
Hin1II	CATG	2 cut(s)	251, 415
Hin6I	GCGC	4 cut(s)	31, 52, 68, 450
HinP1I	GCGC	4 cut(s)	31, 52, 68, 450
HinfI	GANTC	2 cut(s)	107, 210
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	2 cut(s)	248, 412
Hpy99I	CGWCG	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 349
HpyF3I	CTNAG	3 cut(s)	146, 206, 327
Hsp92II	CATG	2 cut(s)	251, 415
HspAI	GCGC	4 cut(s)	31, 52, 68, 450
KspI	CCGCGG	1 cut(s)	127
Kzo9I	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
LmnI	GCTCC	2 cut(s)	45, 348
LpnPI	CCDG	6 cut(s)	50, 70, 209, 249, 314, 382
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	7 cut(s)	130, 140, 152, 177, 190, 200, 237
MboI	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
MboII	GAAGA	2 cut(s)	185, 269
MflI	RGATCY	2 cut(s)	128, 175
MluCI	AATT	6 cut(s)	15, 58, 224, 298, 405, 426
MmeI	TCCRAC	3 cut(s)	166, 203, 370
MnlI	CCTC	4 cut(s)	142, 167, 227, 290
MseI	TTAA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	196
MvnI	CGCG	4 cut(s)	31, 52, 68, 126
MwoI	GCNNNNNNNGC	2 cut(s)	37, 349
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
NlaIII	CATG	2 cut(s)	251, 415
NlaIV	GGNNCC	3 cut(s)	130, 344, 353
NmuCI	GTSAC	1 cut(s)	400
PagI	TCATGA	2 cut(s)	247, 411
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	107, 210
PflMI	CCANNNNNTGG	2 cut(s)	185, 361
PfoI	TCCNGGA	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	130, 344, 353
PsuI	RGATCY	2 cut(s)	128, 175
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SacII	CCGCGG	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	7 cut(s)	128, 138, 150, 175, 188, 198, 235
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	1 cut(s)	373
Sfr303I	CCGCGG	1 cut(s)	127
SgrBI	CCGCGG	1 cut(s)	127
Sse9I	AATT	6 cut(s)	15, 58, 224, 298, 405, 426
SsiI	CCGC	9 cut(s)	23, 29, 44, 50, 66, 113, 118, 124, 126
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	6 cut(s)	15, 58, 224, 298, 405, 426
TfiI	GAWTC	2 cut(s)	107, 210
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	186, 236, 264
TspGWI	ACGGA	1 cut(s)	151
Van91I	CCANNNNNTGG	2 cut(s)	185, 361
XapI	RAATTY	2 cut(s)	15, 58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.