Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0018879

Physical Location & Seq

Genomic Coordinates Forward (+)

23317280 .. 23319102

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32413.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTTCTACCCCCAACAGAGATCGAAAGGGAAAACGACCTGCTGTTCCAGAGGACTACCCATTCTTCTGTGTAAGGCTTCTCGAGCTCGATGATATCATAGAAGGGAGGAAGGAACTTTCAGCTGCAGCTGTGAAGAAGTATGGACATCAAATGGGGGATCACATATTCCTCAAAGTTCCAAACTGGGAAGAACCTTGGAAAGTAAAGTTGAGTAAGTCACCATGTGGTAACCATATGTGGTTAGAGGAGGGGTGGAAAGCATTTACTCAGTTTTACTTGCTTGAAGAAGGTGAGCTCTTGGTGTTCAACTATGATGGCGACCATTCTCATTTCCGAGTACGCATCATAGGTTGGGATGATATGGAAATCCACTACCCTAGTCCTGGTATGTTTTTAGAAAATGTTCTTATGCTTCTGTTAATTTGCAAGATGTATGCACACCGGTGTGTAACAGGAAATGAAGTCAGAGCCGTGATAATTTCCTCCGGATCCTCCGGTGATGAACAGGAAAATGAAGCTAGAGTCATTGCCATTTCATCTGGATCGTCTGGTGATGAACATGAGATTGAAGCTAGAGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

196

Amino Acids

22.28

Weight (kDa)

5.5

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 116	3.3e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018879)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32413 FvH4_7g32450 FvH4_7g32450
rosa_chinensis	RchiOBHm_Chr1g0375031
rosa_samantha	Rh1AG398200 Rh1BG362200 Rh1CG375900 Rh1DG063300
rosa_wichuraiana	Rw1G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	488
AclWI	GGATC	4 cut(s)	168, 486, 499, 553
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	287, 310, 572
AjnI	CCWGG	1 cut(s)	385
AleI	CACNNNNGTG	2 cut(s)	445, 447
AluBI	AGCT	6 cut(s)	88, 125, 131, 298, 521, 575
AluI	AGCT	6 cut(s)	88, 125, 131, 298, 521, 575
Alw21I	GWGCWC	2 cut(s)	90, 300
AlwI	GGATC	4 cut(s)	168, 486, 499, 553
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	125, 128
AsiGI	ACCGGT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	405
AsuHPI	GGTGA	4 cut(s)	213, 305, 512, 566
AvaI	CYCGRG	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	491
BanII	GRGCYC	2 cut(s)	90, 300
Bbv12I	GWGCWC	2 cut(s)	90, 300
BbvI	GCAGC	2 cut(s)	112, 140
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	387
BfaI	CTAG	3 cut(s)	381, 522, 576
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	126, 129
BlsI	GCNGC	2 cut(s)	127, 130
Bme1390I	CCNGG	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	387
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	197
BsaWI	WCCGGW	3 cut(s)	444, 488, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	112, 140
BshTI	ACCGGT	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	90, 300
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	3 cut(s)	445, 489, 498
BslI	CCNNNNNNNGG	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	90, 300
Bsp13I	TCCGGA	1 cut(s)	488
Bsp143I	GATC	4 cut(s)	22, 160, 491, 545
BspCNI	CTCAG	1 cut(s)	283
BspEI	TCCGGA	1 cut(s)	488
BspLI	GGNNCC	1 cut(s)	493
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	4 cut(s)	168, 486, 499, 553
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	4 cut(s)	22, 160, 491, 545
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	270
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	4 cut(s)	25, 163, 494, 548
BstMBI	GATC	4 cut(s)	22, 160, 491, 545
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	387
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	112, 140
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	364
BveI	ACCTGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	341
CspAI	ACCGGT	1 cut(s)	444
CviAII	CATG	2 cut(s)	225, 563
CviJI	RGCY	9 cut(s)	5, 79, 88, 125, 131, 298, 473, 521, 575
CviKI_1	RGCY	9 cut(s)	5, 79, 88, 125, 131, 298, 473, 521, 575
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	24, 162, 493, 547
DpnII	GATC	4 cut(s)	22, 160, 491, 545
DraIII	CACNNNGTG	1 cut(s)	227
Ecl136II	GAGCTC	2 cut(s)	88, 298
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	90, 300
Eco32I	GATATC	1 cut(s)	97
Eco53kI	GAGCTC	2 cut(s)	88, 298
Eco88I	CYCGRG	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	2 cut(s)	88, 298
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	385
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	90, 300
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	228, 566
FatI	CATG	2 cut(s)	224, 562
FauNDI	CATATG	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	126, 129
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	2 cut(s)	90, 300
Fsp4HI	GCNGC	2 cut(s)	126, 129
FspBI	CTAG	3 cut(s)	381, 522, 576
GluI	GCNGC	2 cut(s)	126, 129
HapII	CCGG	3 cut(s)	445, 489, 498
Hin1II	CATG	2 cut(s)	228, 566
HinfI	GANTC	1 cut(s)	525
HpaII	CCGG	3 cut(s)	445, 489, 498
HphI	GGTGA	4 cut(s)	213, 305, 512, 566
Hpy188I	TCNGA	2 cut(s)	338, 470
Hpy188III	TCNNGA	4 cut(s)	50, 83, 489, 543
HpyAV	CCTTC	3 cut(s)	98, 106, 284
HpyCH4V	TGCA	3 cut(s)	128, 429, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	228, 566
Kpn2I	TCCGGA	1 cut(s)	488
Kzo9I	GATC	4 cut(s)	22, 160, 491, 545
Lsp1109I	GCAGC	2 cut(s)	112, 140
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	381, 522, 576
MaeIII	GTNAC	3 cut(s)	219, 230, 451
MalI	GATC	4 cut(s)	24, 162, 493, 547
MboI	GATC	4 cut(s)	22, 160, 491, 545
MboII	GAAGA	4 cut(s)	58, 148, 203, 299
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	2 cut(s)	90, 300
MluCI	AATT	2 cut(s)	423, 480
MlyI	GAGTC	1 cut(s)	534
MnlI	CCTC	7 cut(s)	46, 102, 182, 241, 244, 496, 505
MroI	TCCGGA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	2 cut(s)	445, 447
MspA1I	CMGCKG	2 cut(s)	125, 131
MspI	CCGG	3 cut(s)	445, 489, 498
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	4 cut(s)	22, 160, 491, 545
NlaIII	CATG	2 cut(s)	228, 566
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	219
OliI	CACNNNNGTG	2 cut(s)	445, 447
PaeR7I	CTCGAG	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	405
PinAI	ACCGGT	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	127, 130
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Psp124BI	GAGCTC	2 cut(s)	90, 300
Psp6I	CCWGG	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	2 cut(s)	125, 131
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	2 cut(s)	445, 447
SacI	GAGCTC	2 cut(s)	90, 300
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	2 cut(s)	126, 129
Sau3AI	GATC	4 cut(s)	22, 160, 491, 545
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	90, 300
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	83
SgrAI	CRCCGGYG	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	445, 447
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	423, 480
SspMI	CTAG	3 cut(s)	381, 522, 576
SstI	GAGCTC	2 cut(s)	90, 300
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	197
TaqI	TCGA	3 cut(s)	25, 84, 90
TasI	AATT	2 cut(s)	423, 480
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	2 cut(s)	125, 128
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	5 cut(s)	477, 519, 528, 531, 573
XhoI	CTCGAG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	3 cut(s)	381, 522, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.