Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018879

Physical Location & Seq

Genomic Coordinates Forward (+)

62572433 .. 62580771

Gene Structure 8339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG398200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGTCTTCTGCCAAGAGAAATCGTAAGGGAAAACGACCTGCTGTTCCGGACGACTCTCCATTCTTCTGCTTAAGAATTGTCAATGTTGATGATATCAAGGCCGGAAAGAAGGAACTTCCGGCCGCAGCTGTGAAGAAGTATGGAGATCAAATGGGAGATCACATATTCCTCAAGGTTCCAAATTGTGGAGAACCTTGGAAAGTAAAGTTGAGAAAATCACCTAGTGGTAACCAAATGTGGTTAGAGGAGGGATGGGAAGCATTTACCAACTTTTACTTACTAGAACAAGGTGACACCATGGTGTTCAACTATGAAGGCAAACATTCCCATTTCCAAGTACGCATCATTGGTTGGGATGATATGGAAACTGACTACCCTAGACATGGTATGTATATATCAGTGTATGATAATGCTCTTGTACTTGTATTACTTTGGGTTACAACTTTTGTCATTCAGAGATGTATGGACATCATTGTGTTGAATTATTCATGGGAATTAACAGGAGACGAAGTCAAAGCCATGGTAATTTCCTCTGGATCCTCTGCTGATGGACAGGAAAATGAAGCTAGAGTCATTGTGATTTCATCCGGATCCTCTGCTGATGATCATGAAAATGAAGCTAGAGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

211

Amino Acids

23.85

Weight (kDa)

5.57

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 116	2.9e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018879)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32413 FvH4_7g32450 FvH4_7g32450
rosa_chinensis	RchiOBHm_Chr1g0375031
rosa_samantha	Rh1AG398200 Rh1BG362200 Rh1CG375900 Rh1DG063300
rosa_wichuraiana	Rw1G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccIII	TCCGGA	2 cut(s)	49, 590
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	4 cut(s)	534, 547, 588, 601
AcoI	YGGCCR	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	342, 423
AfiI	CCNNNNNNNGG	2 cut(s)	188, 386
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	310, 484
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	3 cut(s)	131, 569, 623
AluI	AGCT	3 cut(s)	131, 569, 623
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	4 cut(s)	534, 547, 588, 601
Aor13HI	TCCGGA	2 cut(s)	49, 590
AoxI	GGCC	2 cut(s)	102, 123
ApeKI	GCWGC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	213, 305
BamHI	GGATCC	2 cut(s)	539, 593
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	249, 545
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	5 cut(s)	225, 284, 381, 570, 624
BfrI	CTTAAG	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	126, 129
BlsI	GCNGC	2 cut(s)	127, 130
BmiI	GGNNCC	3 cut(s)	180, 541, 595
BmsI	GCATC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	197, 300, 522
BsaWI	WCCGGW	2 cut(s)	49, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 386
BseAI	TCCGGA	2 cut(s)	49, 590
BseDI	CCNNGG	3 cut(s)	197, 300, 522
BseGI	GGATG	3 cut(s)	260, 364, 587
BseLI	CCNNNNNNNGG	2 cut(s)	188, 386
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	104, 125
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	4 cut(s)	50, 105, 122, 591
BslI	CCNNNNNNNGG	2 cut(s)	188, 386
BsmAI	GTCTC	1 cut(s)	501
BsmBI	CGTCTC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	104, 125
Bsp13I	TCCGGA	2 cut(s)	49, 590
Bsp143I	GATC	5 cut(s)	148, 160, 539, 593, 607
Bsp19I	CCATGG	2 cut(s)	300, 522
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	104, 125
BspEI	TCCGGA	2 cut(s)	49, 590
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	3 cut(s)	180, 541, 595
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	4 cut(s)	534, 547, 588, 601
BspTI	CTTAAG	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	197, 300, 522
BssMI	GATC	5 cut(s)	148, 160, 539, 593, 607
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	197, 300, 522
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	73
BstDSI	CCRYGG	2 cut(s)	300, 522
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	260, 364, 587
BstKTI	GATC	5 cut(s)	151, 163, 542, 596, 610
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	5 cut(s)	148, 160, 539, 593, 607
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	140
BstX2I	RGATCY	2 cut(s)	539, 593
BstYI	RGATCY	2 cut(s)	539, 593
BstZI	CGGCCG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	104, 125
BtgI	CCRYGG	2 cut(s)	300, 522
BtsCI	GGATG	3 cut(s)	260, 364, 587
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	49
CciI	TCATGA	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	341, 422
CviAII	CATG	5 cut(s)	301, 386, 492, 523, 611
CviJI	RGCY	6 cut(s)	104, 125, 131, 521, 569, 623
CviKI_1	RGCY	6 cut(s)	104, 125, 131, 521, 569, 623
CviQI	GTAC	2 cut(s)	341, 422
DpnI	GATC	5 cut(s)	150, 162, 541, 595, 609
DpnII	GATC	5 cut(s)	148, 160, 539, 593, 607
DraIII	CACNNNGTG	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	123
EagI	CGGCCG	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	123
Eco130I	CCWWGG	3 cut(s)	197, 300, 522
Eco32I	GATATC	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	3 cut(s)	197, 300, 522
ErhI	CCWWGG	3 cut(s)	197, 300, 522
Esp3I	CGTCTC	1 cut(s)	501
FaeI	CATG	5 cut(s)	304, 389, 495, 526, 614
FatI	CATG	5 cut(s)	300, 385, 491, 522, 610
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	126, 129
FokI	GGATG	3 cut(s)	267, 371, 574
Fsp4HI	GCNGC	2 cut(s)	126, 129
FspBI	CTAG	5 cut(s)	225, 284, 381, 570, 624
GluI	GCNGC	2 cut(s)	126, 129
HaeIII	GGCC	2 cut(s)	104, 125
HapII	CCGG	4 cut(s)	50, 105, 122, 591
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	304, 389, 495, 526, 614
HinfI	GANTC	2 cut(s)	56, 573
HpaII	CCGG	4 cut(s)	50, 105, 122, 591
HphI	GGTGA	2 cut(s)	213, 305
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	4 cut(s)	50, 537, 591, 611
HpyAV	CCTTC	2 cut(s)	106, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	304, 389, 495, 526, 614
Kpn2I	TCCGGA	2 cut(s)	49, 590
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	148, 160, 539, 593, 607
LpnPI	CCDG	8 cut(s)	54, 63, 118, 135, 489, 522, 542, 604
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	5 cut(s)	225, 284, 381, 570, 624
MaeIII	GTNAC	3 cut(s)	230, 293, 439
MalI	GATC	5 cut(s)	150, 162, 541, 595, 609
MboI	GATC	5 cut(s)	148, 160, 539, 593, 607
MboII	GAAGA	2 cut(s)	58, 148
MflI	RGATCY	2 cut(s)	539, 593
MluCI	AATT	5 cut(s)	78, 184, 484, 497, 528
MlyI	GAGTC	2 cut(s)	50, 582
MnlI	CCTC	6 cut(s)	182, 241, 244, 544, 553, 607
MroI	TCCGGA	2 cut(s)	49, 590
MseI	TTAA	2 cut(s)	74, 500
MslI	CAYNNNNRTG	3 cut(s)	302, 476, 615
MspA1I	CMGCKG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	73
MspI	CCGG	4 cut(s)	50, 105, 122, 591
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	2 cut(s)	300, 522
NdeII	GATC	5 cut(s)	148, 160, 539, 593, 607
NlaIII	CATG	5 cut(s)	304, 389, 495, 526, 614
NlaIV	GGNNCC	3 cut(s)	180, 541, 595
NmuCI	GTSAC	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	610
PflFI	GACNNNGTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	127, 130
PleI	GAGTC	2 cut(s)	50, 581
PpsI	GAGTC	2 cut(s)	50, 581
PspEI	GGTNACC	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	180, 541, 595
PsuI	RGATCY	2 cut(s)	539, 593
PsyI	GACNNNGTC	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	2 cut(s)	342, 423
RsaNI	GTAC	2 cut(s)	341, 422
RseI	CAYNNNNRTG	3 cut(s)	302, 476, 615
SaqAI	TTAA	2 cut(s)	74, 500
SatI	GCNGC	2 cut(s)	126, 129
Sau3AI	GATC	5 cut(s)	148, 160, 539, 593, 607
SchI	GAGTC	2 cut(s)	50, 582
SetI	ASST	8 cut(s)	43, 133, 180, 199, 226, 295, 571, 625
SfaNI	GCATC	1 cut(s)	354
SmiMI	CAYNNNNRTG	3 cut(s)	302, 476, 615
SmlI	CTYRAG	2 cut(s)	73, 173
SmoI	CTYRAG	2 cut(s)	73, 173
Sse9I	AATT	5 cut(s)	78, 184, 484, 497, 528
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	5 cut(s)	225, 284, 381, 570, 624
StyI	CCWWGG	3 cut(s)	197, 300, 522
TasI	AATT	5 cut(s)	78, 184, 484, 497, 528
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	74, 500
Tru9I	TTAA	2 cut(s)	74, 500
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	6 cut(s)	330, 480, 576, 579, 627, 633
TspRI	CASTG	1 cut(s)	408
Tth111I	GACNNNGTC	1 cut(s)	512
Van91I	CCANNNNNTGG	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	73
XspI	CTAG	5 cut(s)	225, 284, 381, 570, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.