Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0018879

Physical Location & Seq

Genomic Coordinates Forward (+)

23325577 .. 23327260

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32450.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTTACTGTGTTTCTATTCCCTTGGCCTTGGTTTTTAGCTGAACTTCCAGCTGCAGCTGTGAAGAAGTATGGACATCAAATGGGGGATCATATATTCCTCAAAGTTCCAAACTGGGAAGAACCTCGGAAAGTAAAGTTGAGTACGTCACCATGTGGTAACCATATGTGGTTAGAGGAGGGGTGGAAAGCATTTACTCAGTTTTACTTGCTTGAAGAAGGTGAGCTCTTGGTGTTCAACTATGATGGCGAACATTCTCATTTCCGAGTACGCATCATAGGTTGGGATGATATGGAAATCCACTACCCTAGTCCTGGAAATGAAGTCAGAGCCATGATAATTTCCTCAATATCCTCTGGTGATGAACAGGAAAATGAAGCTAGAGTCATTGCCATTTCATCTGGATCCTCTGGTGATGAACATGAGATTGAAGCTAGAGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

149

Amino Acids

17.03

Weight (kDa)

5.08

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	11 - 65	1.2e-07	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018879)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32413 FvH4_7g32450 FvH4_7g32450
rosa_chinensis	RchiOBHm_Chr1g0375031
rosa_samantha	Rh1AG398200 Rh1BG362200 Rh1CG375900 Rh1DG063300
rosa_wichuraiana	Rw1G035340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	96, 399, 412
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	145, 270
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	215, 238, 431
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	6 cut(s)	41, 53, 59, 226, 380, 434
AluI	AGCT	6 cut(s)	41, 53, 59, 226, 380, 434
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	96, 399, 412
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	53, 56
AsuHPI	GGTGA	4 cut(s)	141, 233, 371, 425
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	40, 68
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	315
BfaI	CTAG	3 cut(s)	309, 381, 435
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	124
BsaJI	CCNNGG	3 cut(s)	23, 29, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	23, 29, 125
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	40, 68
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	314
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	88, 404
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	406
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	3 cut(s)	96, 399, 412
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	23, 29, 125
BssMI	GATC	2 cut(s)	88, 404
BssT1I	CCWWGG	2 cut(s)	23, 29
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	91, 407
BstMBI	GATC	2 cut(s)	88, 404
BstNI	CCWGG	1 cut(s)	315
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	40, 68
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	144, 269
CviAII	CATG	3 cut(s)	153, 334, 422
CviJI	RGCY	8 cut(s)	28, 41, 53, 59, 226, 332, 380, 434
CviKI_1	RGCY	8 cut(s)	28, 41, 53, 59, 226, 332, 380, 434
CviQI	GTAC	2 cut(s)	144, 269
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	90, 406
DpnII	GATC	2 cut(s)	88, 404
DraIII	CACNNNGTG	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	23, 29
Eco24I	GRGCYC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	23, 29
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	2 cut(s)	23, 29
FaeI	CATG	3 cut(s)	156, 337, 425
FatI	CATG	3 cut(s)	152, 333, 421
FauNDI	CATATG	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	54, 57
FspBI	CTAG	3 cut(s)	309, 381, 435
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	156, 337, 425
HinfI	GANTC	1 cut(s)	384
HphI	GGTGA	4 cut(s)	141, 233, 371, 425
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	129, 266, 329
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	156, 337, 425
Kzo9I	GATC	2 cut(s)	88, 404
LpnPI	CCDG	8 cut(s)	63, 100, 300, 327, 342, 353, 387, 396
Lsp1109I	GCAGC	2 cut(s)	40, 68
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	3 cut(s)	309, 381, 435
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	147, 158
MalI	GATC	2 cut(s)	90, 406
MboI	GATC	2 cut(s)	88, 404
MboII	GAAGA	3 cut(s)	76, 131, 227
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	7 cut(s)	110, 135, 169, 172, 355, 364, 418
MspA1I	CMGCKG	2 cut(s)	53, 59
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	2 cut(s)	88, 404
NlaIII	CATG	3 cut(s)	156, 337, 425
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	147
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	55, 58
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	313
PspEI	GGTNACC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	404
PvuII	CAGCTG	2 cut(s)	53, 59
RsaI	GTAC	2 cut(s)	145, 270
RsaNI	GTAC	2 cut(s)	144, 269
SacI	GAGCTC	1 cut(s)	228
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	2 cut(s)	88, 404
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	339
SspMI	CTAG	3 cut(s)	309, 381, 435
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	23, 29
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	149
TasI	AATT	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	2 cut(s)	53, 56
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	5 cut(s)	336, 378, 387, 390, 432
XspI	CTAG	3 cut(s)	309, 381, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.