FvH4_7g32700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014401
Physical Location & Seq
Forward (+)
23466706 .. 23469068
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32700.t1

Sequence Viewer

Length: 318 bp
ATGCGTTTAAAGGCGTTGAGAAACGAACGGCACGTCGGTATTCACGAGGGCTTTATAGATCGGAGAGGAGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGATGGGTTACGTTCTGCGAGTGAGGTTGGCGTCGTTCTTCGGCGGAGCTGCGGTGGCGTCGTTTATGGGGCTTTACATCCTTCACAATGACTACAAGGTCGCTCATGAGGCCATCTCTCATCAGGTGAAAGGCTTGCATGAGTCACTGGACAGACGAATTTCAGCTCTAGAGAGTATAAAACAAACGGAAGCTCCACAACCTGCAGAAGCAGCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.92

Weight (kDa)

9.93

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53650
fragaria_vesca FvH4_7g32700
malus_domestica MD01G1227400.v1.1
prunus_persica Prupe.2G317400_v2.0.a1
pyrus_communis pycom01g23550 pycom07g27010
rosa_chinensis RchiOBHm_Chr1g0382671
rosa_laevigata RLG00000026166
rosa_multiflora Rmu_sc0006862.1_g000001 Rmu_sc0017237.1_g000010
rosa_roxburghii Rroxscaffold_4G00277960
rosa_rugosa Rorug01G0435300
rosa_samantha Rh1AG460500 Rh1BG417300 Rh1CG430800 Rh1DG449500
rosa_wichuraiana Rw1G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 307
AciI CCGC 2 cut(s) 141, 149
AcsI RAATTY 1 cut(s) 255
AcyI GRCGYC 2 cut(s) 128, 155
AjiI CACGTC 1 cut(s) 34
AluBI AGCT 4 cut(s) 146, 263, 290, 311
AluI AGCT 4 cut(s) 146, 263, 290, 311
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 146, 308
ApoI RAATTY 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsuHPI GGTGA 1 cut(s) 235
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BauI CACGAG 1 cut(s) 44
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 94, 218
BceAI ACGGC 1 cut(s) 44
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 2 cut(s) 147, 309
BlsI GCNGC 2 cut(s) 148, 310
BmgBI CACGTC 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BsaHI GRCGYC 2 cut(s) 128, 155
BsaXI ACNNNNNCTCC 4 cut(s) 135, 165, 274, 304
Bse1I ACTGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 209
BsnI GGCC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 2 cut(s) 141, 149
BspANI GGCC 1 cut(s) 209
BspHI TCATGA 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 249
BssMI GATC 1 cut(s) 58
BssNI GRCGYC 2 cut(s) 128, 155
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
BstACI GRCGYC 2 cut(s) 128, 155
BstC8I GCNNGC 1 cut(s) 233
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 152, 206, 308
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 209
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 242
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 233
CciI TCATGA 1 cut(s) 202
CseI GACGC 2 cut(s) 117, 144
CviAII CATG 2 cut(s) 203, 236
CviJI RGCY 8 cut(s) 51, 146, 169, 209, 231, 263, 290, 311
CviKI_1 RGCY 8 cut(s) 51, 146, 169, 209, 231, 263, 290, 311
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DraI TTTAAA 1 cut(s) 9
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EciI GGCGGA 1 cut(s) 156
FaeI CATG 2 cut(s) 206, 239
FaiI YATR 5 cut(s) 56, 164, 204, 237, 275
FatI CATG 2 cut(s) 202, 235
Fnu4HI GCNGC 2 cut(s) 147, 309
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 147, 309
FspBI CTAG 1 cut(s) 266
GluI GCNGC 2 cut(s) 147, 309
HaeIII GGCC 1 cut(s) 209
HgaI GACGC 2 cut(s) 117, 144
Hin1I GRCGYC 2 cut(s) 128, 155
Hin1II CATG 2 cut(s) 206, 239
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 44, 203, 266
Hpy99I CGWCG 3 cut(s) 38, 133, 160
HpyAV CCTTC 2 cut(s) 79, 188
HpyCH4IV ACGT 2 cut(s) 33, 108
HpyCH4V TGCA 2 cut(s) 235, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 206, 308
HpySE526I ACGT 2 cut(s) 33, 108
Hsp92I GRCGYC 2 cut(s) 128, 155
Hsp92II CATG 2 cut(s) 206, 239
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 143, 295
LpnPI CCDG 3 cut(s) 206, 230, 312
Lsp1109I GCAGC 1 cut(s) 133
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 33, 108
MaeIII GTNAC 2 cut(s) 104, 240
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 8 cut(s) 85, 88, 91, 94, 103, 106, 109, 127
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 4 cut(s) 40, 59, 114, 199
MseI TTAA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 152, 206, 308
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 206, 239
NmuCI GTSAC 1 cut(s) 240
PagI TCATGA 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 42
PkrI GCNGC 2 cut(s) 148, 310
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PstI CTGCAG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 147, 309
Sau3AI GATC 1 cut(s) 58
SchI GAGTC 1 cut(s) 248
SfcI CTRYAG 1 cut(s) 300
Sse9I AATT 1 cut(s) 255
SsiI CCGC 2 cut(s) 141, 149
SspMI CTAG 1 cut(s) 266
TaiI ACGT 2 cut(s) 36, 111
TasI AATT 1 cut(s) 255
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 2 cut(s) 146, 308
Tsp45I GTSAC 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 249
XapI RAATTY 1 cut(s) 255
XbaI TCTAGA 1 cut(s) 265
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.