RLG00000026166

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014401
Physical Location & Seq
Reverse (-)
918302 .. 920044
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026166

Sequence Viewer

Length: 321 bp
ATGCGTTTTCAAAGCCCTTTAAGAAACGAACACGACCCGTCGGTCTTCACGAGGTCTATAAAGATCGGAGAAGGCAGAAAGGGGAAGAAGAAGAAGAAGAAGATGGGTTACGTTCTTCGAGTGAGGTTGGCGTCGTTCTTCGCTGGAGCTGCGGTGGCGTCGTTTACGGGGCTTTACATCCTTCACAATGACTACAAGGTCGCTCACGAGGCCATCTCTCGTCAGGTTAAAGGCCTCCATGAGTCACTGGACAGACGAATTTCAGCTCTTGAGAGTTTAAAACAAACTGAAGCTCCACAACCTGCAGAAGCAGCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.9

Weight (kDa)

10.11

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53650
fragaria_vesca FvH4_7g32700
malus_domestica MD01G1227400.v1.1
prunus_persica Prupe.2G317400_v2.0.a1
pyrus_communis pycom01g23550 pycom07g27010
rosa_chinensis RchiOBHm_Chr1g0382671
rosa_laevigata RLG00000026166
rosa_multiflora Rmu_sc0006862.1_g000001 Rmu_sc0017237.1_g000010
rosa_roxburghii Rroxscaffold_4G00277960
rosa_rugosa Rorug01G0435300
rosa_samantha Rh1AG460500 Rh1BG417300 Rh1CG430800 Rh1DG449500
rosa_wichuraiana Rw1G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 41, 197
Acc36I ACCTGC 1 cut(s) 310
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 2 cut(s) 131, 158
AgsI TTSAA 1 cut(s) 11
AluBI AGCT 4 cut(s) 149, 266, 293, 314
AluI AGCT 4 cut(s) 149, 266, 293, 314
AoxI GGCC 2 cut(s) 210, 232
ApeKI GCWGC 2 cut(s) 149, 311
ApoI RAATTY 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BauI CACGAG 2 cut(s) 49, 206
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 97, 221
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 150, 312
BlsI GCNGC 2 cut(s) 151, 313
BpiI GAAGAC 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 290
BsaHI GRCGYC 2 cut(s) 131, 158
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 277, 307
Bse1I ACTGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 2 cut(s) 212, 234
BsnI GGCC 2 cut(s) 212, 234
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 212, 234
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 252
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 2 cut(s) 131, 158
BssSI CACGAG 2 cut(s) 49, 206
Bst2BI CACGAG 2 cut(s) 49, 206
BstACI GRCGYC 2 cut(s) 131, 158
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 4 cut(s) 149, 155, 209, 311
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 212, 234
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 310
CseI GACGC 2 cut(s) 120, 147
CviAII CATG 1 cut(s) 239
CviJI RGCY 8 cut(s) 15, 149, 172, 212, 234, 266, 293, 314
CviKI_1 RGCY 8 cut(s) 15, 149, 172, 212, 234, 266, 293, 314
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DraI TTTAAA 1 cut(s) 279
DrdI GACNNNNNNGTC 2 cut(s) 41, 197
DseDI GACNNNNNNGTC 2 cut(s) 41, 197
Eco147I AGGCCT 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 309
FaeI CATG 1 cut(s) 242
FaiI YATR 2 cut(s) 59, 240
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 150, 312
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 150, 312
GluI GCNGC 2 cut(s) 150, 312
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 212, 234
HgaI GACGC 2 cut(s) 120, 147
Hin1I GRCGYC 2 cut(s) 131, 158
Hin1II CATG 1 cut(s) 242
HinfI GANTC 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 49, 206, 269
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 3 cut(s) 43, 136, 163
HpyAV CCTTC 2 cut(s) 65, 191
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 155, 209, 311
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 2 cut(s) 131, 158
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 146, 298
LpnPI CCDG 4 cut(s) 129, 209, 233, 315
Lsp1109I GCAGC 1 cut(s) 136
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 107, 243
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 9 cut(s) 37, 97, 100, 103, 106, 107, 109, 112, 130
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 4 cut(s) 45, 117, 202, 245
MseI TTAA 3 cut(s) 20, 228, 278
MspA1I CMGCKG 1 cut(s) 314
MwoI GCNNNNNNNGC 4 cut(s) 149, 155, 209, 311
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 243
PceI AGGCCT 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PkrI GCNGC 2 cut(s) 151, 313
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PstI CTGCAG 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 314
SaqAI TTAA 3 cut(s) 20, 228, 278
SatI GCNGC 2 cut(s) 150, 312
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 1 cut(s) 258
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 152
StuI AGGCCT 1 cut(s) 234
TaiI ACGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 118
TaqII GACCGA 1 cut(s) 31
TasI AATT 1 cut(s) 258
Tru1I TTAA 3 cut(s) 20, 228, 278
Tru9I TTAA 3 cut(s) 20, 228, 278
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 2 cut(s) 149, 311
Tsp45I GTSAC 1 cut(s) 243
TspRI CASTG 1 cut(s) 252
XapI RAATTY 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.