pycom07g27010

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
26859592 .. 26861120
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27010.1

Sequence Viewer

Length: 219 bp
ATGGGTTACGTTCTGAGAGTGAGATTGGCGTCGTTTTTCGGCGGAGCTGCGGTGGCGTCGTTTCTGGGGCTCTACATCCTCCACAATGATTACAAGGTCGCCCACCACGCCATTTCTCAACAGGTGAAAGGCCTCCATGAATCATTGGATAGAAGAATTTCAGCTCTTGAAAGCTTAAAGCCAACCGAAGCTCCACAACCAGTAGAAGCATCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.89

Weight (kDa)

6.91

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014401)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53650
fragaria_vesca FvH4_7g32700
malus_domestica MD01G1227400.v1.1
prunus_persica Prupe.2G317400_v2.0.a1
pyrus_communis pycom01g23550 pycom07g27010
rosa_chinensis RchiOBHm_Chr1g0382671
rosa_laevigata RLG00000026166
rosa_multiflora Rmu_sc0006862.1_g000001 Rmu_sc0017237.1_g000010
rosa_roxburghii Rroxscaffold_4G00277960
rosa_rugosa Rorug01G0435300
rosa_samantha Rh1AG460500 Rh1BG417300 Rh1CG430800 Rh1DG449500
rosa_wichuraiana Rw1G041110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 50
AcsI RAATTY 1 cut(s) 156
AcyI GRCGYC 2 cut(s) 29, 56
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 4 cut(s) 47, 164, 174, 191
AluI AGCT 4 cut(s) 47, 164, 174, 191
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 136
BanII GRGCYC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 34
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BsaHI GRCGYC 2 cut(s) 29, 56
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 175, 205
Bse1I ACTGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 75, 209
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 132
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 72
BspACI CCGC 2 cut(s) 42, 50
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 200
BssNI GRCGYC 2 cut(s) 29, 56
BstACI GRCGYC 2 cut(s) 29, 56
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 75, 209
BstMWI GCNNNNNNNGC 2 cut(s) 53, 107
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 75, 209
CseI GACGC 2 cut(s) 18, 45
CviAII CATG 1 cut(s) 137
CviJI RGCY 7 cut(s) 47, 70, 132, 164, 174, 181, 191
CviKI_1 RGCY 7 cut(s) 47, 70, 132, 164, 174, 181, 191
DdeI CTNAG 1 cut(s) 14
EciI GGCGGA 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 1 cut(s) 140
FaiI YATR 1 cut(s) 138
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 62, 196
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 132
HgaI GACGC 2 cut(s) 18, 45
Hin1I GRCGYC 2 cut(s) 29, 56
Hin1II CATG 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 1 cut(s) 140
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 15, 214
Hpy188III TCNNGA 1 cut(s) 167
Hpy99I CGWCG 2 cut(s) 34, 61
HpyCH4IV ACGT 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 107
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 2 cut(s) 29, 56
Hsp92II CATG 1 cut(s) 140
LmnI GCTCC 2 cut(s) 44, 196
LpnPI CCDG 3 cut(s) 50, 107, 213
Lsp1109I GCAGC 1 cut(s) 34
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 156
MnlI CCTC 2 cut(s) 89, 143
MroXI GAANNNNTTC 1 cut(s) 157
MseI TTAA 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 53, 107
NlaIII CATG 1 cut(s) 140
PceI AGGCCT 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 72
SetI ASST 7 cut(s) 12, 49, 99, 126, 166, 176, 193
SgeI CNNG 7 cut(s) 77, 106, 119, 134, 149, 179, 212
Sse9I AATT 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 2 cut(s) 42, 50
StuI AGGCCT 1 cut(s) 132
TaiI ACGT 1 cut(s) 12
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 153
XapI RAATTY 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.