Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Forward (+)

53469336 .. 53472998

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0435300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTGAAACAGAAACAAGGAAGAGGAAGATGGGAGAGAGAAGAGAAGCTGATTCCAATTCCAGGACAGCATCACCAAAGTGGCCAACAATCAAACCAAAACAAAACATTCAGATAACCCGTCTCAAAGACAATGATCTTTTCACCGTACATAATTTCTTCACATCTGCAGAATCAAAGGCTTTTGTTAAGGTTGCAGAGTCTATTGGGTTTGTTCACCAAGGAAGTCTTGGCCCAACAAAAGGTGAAGCTTTTAGAGACAATGATAGAATGTCTGTGAACGATCCTGTTCTTGCTGATTCTATATGGAATTCTGGGCTCAGAAAATTGTTTTCTGACATCAAAATTCGAAGGGAGGTCGCTGTTGGCTTAAACCCAAATATCAGATTCTACAGGTACAAGGTTGGTCAGCGATTTGGGAGGCATATTGATGAAAGTGTTGATCTTGAAGATGGAAAACGCACACATTATACTTTGTTGATATATTTGAGTGGCGGTTTCAAACCGAAAGCAAAAAATGATGTGAGCAGTCATCAGGATTCATCCTCAGAGCCTCTGGTTGGAGGAGAGACCGTCTTTTATGGCTCAAGGAATAGTGTTGTGGCTGAGGTGGCTCCCGTTGAAGGGATGGCTCTTCTGCACATTCATGGGCACAAATGTATGCTGCATGAAGCTCGAAATGTTACTAAGGGTATCAAGACATCTGTGTGCGTTGGTTTGGTGAGATCTGCGTGCGATGAGAGGGATCGTTTAGAAATACAGATGGAAGCACGGTGTATATTACCAATGGGGATCTCACCATATCTGTTTTATGTATCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

274

Amino Acids

30.83

Weight (kDa)

9.3

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	3 cut(s)	278, 753, 800
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	2 cut(s)	310, 345
AfaI	GTAC	2 cut(s)	150, 398
AfiI	CCNNNNNNNGG	5 cut(s)	63, 242, 560, 623, 624
AgsI	TTSAA	3 cut(s)	449, 502, 623
AjnI	CCWGG	1 cut(s)	62
AleI	CACNNNNGTG	1 cut(s)	79
AluBI	AGCT	3 cut(s)	50, 251, 674
AluI	AGCT	3 cut(s)	50, 251, 674
Alw26I	GTCTC	3 cut(s)	128, 252, 563
AlwI	GGATC	3 cut(s)	278, 753, 800
AoxI	GGCC	2 cut(s)	83, 232
ApeKI	GCWGC	1 cut(s)	664
ApoI	RAATTY	2 cut(s)	310, 345
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	6 cut(s)	66, 136, 209, 257, 733, 789
AsuII	TTCGAA	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	651
BccI	CCATC	4 cut(s)	25, 446, 622, 757
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	128, 252, 563
BfmI	CTRYAG	2 cut(s)	168, 391
BglII	AGATCT	1 cut(s)	725
BisI	GCNGC	1 cut(s)	665
BlsI	GCNGC	1 cut(s)	666
Bme1390I	CCNGG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	571
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 242, 560, 623, 624
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	542, 633
BseLI	CCNNNNNNNGG	5 cut(s)	63, 242, 560, 623, 624
BseMII	CTCAG	3 cut(s)	334, 561, 597
BseRI	GAGGAG	1 cut(s)	579
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	1 cut(s)	651
BsgI	GTGCAG	1 cut(s)	623
BshFI	GGCC	2 cut(s)	85, 234
BslI	CCNNNNNNNGG	5 cut(s)	63, 242, 560, 623, 624
BsmAI	GTCTC	3 cut(s)	128, 252, 563
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	85, 234
Bso31I	GGTCTC	1 cut(s)	563
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	321, 654
Bsp143I	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	85, 234
BspCNI	CTCAG	3 cut(s)	333, 560, 598
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	3 cut(s)	278, 753, 800
BspQI	GCTCTTC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	563
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	148, 574, 774
Bst6I	CTCTTC	3 cut(s)	17, 37, 639
BstBI	TTCGAA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	4 cut(s)	320, 547, 606, 687
BstF5I	GGATG	2 cut(s)	542, 633
BstKTI	GATC	6 cut(s)	139, 286, 445, 728, 748, 795
BstMAI	GTCTC	3 cut(s)	128, 252, 563
BstMBI	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	168, 391
BstSLI	GKGCMC	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	651
BstX2I	RGATCY	2 cut(s)	725, 792
BstYI	RGATCY	2 cut(s)	725, 792
BsuRI	GGCC	2 cut(s)	85, 234
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	2 cut(s)	542, 633
Cac8I	GCNNGC	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	149, 397
CviAII	CATG	3 cut(s)	647, 668, 820
CviQI	GTAC	2 cut(s)	149, 397
DdeI	CTNAG	4 cut(s)	320, 547, 606, 687
DpnI	GATC	6 cut(s)	138, 285, 444, 727, 747, 794
DpnII	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	3 cut(s)	17, 37, 639
EarI	CTCTTC	3 cut(s)	17, 37, 639
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	3 cut(s)	650, 671, 823
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	3 cut(s)	646, 667, 819
Fnu4HI	GCNGC	1 cut(s)	665
FokI	GGATG	2 cut(s)	529, 640
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	665
GluI	GCNGC	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	85, 234
Hin1II	CATG	3 cut(s)	650, 671, 823
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	6 cut(s)	53, 173, 200, 299, 387, 539
HphI	GGTGA	6 cut(s)	66, 136, 209, 257, 733, 789
Hpy166II	GTNNAC	2 cut(s)	217, 280
Hpy188I	TCNGA	5 cut(s)	114, 323, 337, 386, 550
Hpy188III	TCNNGA	3 cut(s)	446, 536, 697
Hpy8I	GTNNAC	2 cut(s)	217, 280
HpyAV	CCTTC	2 cut(s)	345, 617
HpyCH4III	ACNGT	3 cut(s)	148, 574, 774
HpyCH4V	TGCA	4 cut(s)	170, 197, 640, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	4 cut(s)	320, 547, 606, 687
Hsp92II	CATG	3 cut(s)	650, 671, 823
Kzo9I	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	1 cut(s)	619
LpnPI	CCDG	7 cut(s)	49, 76, 300, 300, 379, 521, 542
Lsp1109I	GCAGC	1 cut(s)	651
LweI	GCATC	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	6 cut(s)	138, 285, 444, 727, 747, 794
MboI	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
MboII	GAAGA	6 cut(s)	34, 40, 54, 151, 461, 626
MflI	RGATCY	2 cut(s)	725, 792
MhlI	GDGCHC	2 cut(s)	321, 654
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	5 cut(s)	58, 154, 310, 326, 345
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	18, 349, 414, 556, 557, 564, 601, 735
Mox20I	TGGCCA	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	2 cut(s)	189, 371
MslI	CAYNNNNRTG	4 cut(s)	79, 429, 645, 706
Msp20I	TGGCCA	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeII	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
NlaIII	CATG	3 cut(s)	650, 671, 823
NlaIV	GGNNCC	1 cut(s)	615
NspV	TTCGAA	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	639
PfeI	GAWTC	5 cut(s)	53, 173, 299, 387, 539
PfoI	TCCNGGA	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	666
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	725, 792
RsaI	GTAC	2 cut(s)	150, 398
RsaNI	GTAC	2 cut(s)	149, 397
RseI	CAYNNNNRTG	4 cut(s)	79, 429, 645, 706
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	189, 371
SatI	GCNGC	1 cut(s)	665
Sau3AI	GATC	6 cut(s)	136, 283, 442, 725, 745, 792
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	321, 654
SetI	ASST	9 cut(s)	52, 195, 247, 253, 360, 398, 405, 612, 676
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	2 cut(s)	168, 391
SfuI	TTCGAA	1 cut(s)	349
SmiMI	CAYNNNNRTG	4 cut(s)	79, 429, 645, 706
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
Sse9I	AATT	5 cut(s)	58, 154, 310, 326, 345
SsiI	CCGC	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	148, 574, 774
TaqI	TCGA	2 cut(s)	349, 676
TasI	AATT	5 cut(s)	58, 154, 310, 326, 345
TfiI	GAWTC	5 cut(s)	53, 173, 299, 387, 539
Tru1I	TTAA	2 cut(s)	189, 371
Tru9I	TTAA	2 cut(s)	189, 371
TseI	GCWGC	1 cut(s)	664
TspDTI	ATGAA	4 cut(s)	447, 531, 635, 684
XapI	RAATTY	2 cut(s)	310, 345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.