Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Forward (+)

67385768 .. 67387303

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGTAGAGAAGAGGATAGGAAGCTGGCACATGAGCAGAATGTTCAGACCTTGATCGATCATGGGTTAGACGGACAAGTTTTAACGGCTGAGAAACCAAATTCTGCTACCAAGTCCTCAAAATCTGACACTCCAATCCATTCAGTCAATCTCAATGAAATTACAATAAACAATTCCCCTGGTACAGGTTTGCCCGAGTCCTTTGTCTCAACTGGACACACCAATGCACCATCAGTGGGTAGGACTTCGGAGACCGCTCTTCTAGATGAAAGGTCATTGTTGGCTTGGATGGTTCGGACAATACCAGCTGGTGGTAGAATTAGGATCAGTTCGACGCTGCCGAATAGGCTTGGGAAGATGCTTGCACCTTTAGACTGGCATGATTACAAGAAAAAGTATGGAAAGCTAGATGATTTCGTTGCTGCTCATACTGAATTATTTGTGATTGAGGGGGACTATATTCAGCTGCGTGAAGGAGCTCAAGAGATGATAGCAGCTACAGCCGTTGTTGCCAGAGTTGCTGCTGCTGCAGCAACATCATCCCCCTACTCTTCATGTTTGCCTTCTGTGGCTGTTACTCCAGTGGCACAGACTCACCGCTTAAAGAAGATATCATCTCTTGATTCCAAAAATGTGGTTACTTCTACTCCAAATGCAAATAATGCTCACTTGCAGTCTGTAAAGCAGAATCAGCAATTAAATGGTGTATCTTTTGGTGTTTCGGGAGGTATGACGAACGTAAAAATTTTGAGCAAATCCAAGGACATGAATGGGCCTGAACCTACTCCCAGCCAGTCATCTGTATTTCTTAATGGTGGAAATGGAGCTCCTCTGGACAGATCAATGGCCAATGGCCGGCATTTTGTTGGGAAACAGCATGGCAGGTATGCCTCTAAACCTTCAAACATACTTGAAAGACACTTAAACTCGTTTCCTGTATTGCTTATTGAGTTTATTGTGTTGTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

34.78

Weight (kDa)

9.23

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7725	PF24851	87 - 157	4.2e-36	Domain of unknown function (DUF7725)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	873
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	257
AciI	CCGC	2 cut(s)	255, 598
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	2 cut(s)	846, 853
AcsI	RAATTY	2 cut(s)	100, 744
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	4 cut(s)	185, 236, 311, 855
AgsI	TTSAA	2 cut(s)	903, 914
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	7 cut(s)	25, 308, 406, 466, 479, 497, 827
AluI	AGCT	7 cut(s)	25, 308, 406, 466, 479, 497, 827
Alw21I	GWGCWC	2 cut(s)	481, 829
Alw26I	GTCTC	2 cut(s)	211, 245
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	773, 846, 853
ApeKI	GCWGC	8 cut(s)	337, 422, 466, 494, 521, 524, 527, 530
ApoI	RAATTY	2 cut(s)	100, 744
AspS9I	GGNCC	1 cut(s)	773
AsuHPI	GGTGA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	848
BanII	GRGCYC	2 cut(s)	481, 829
Bbv12I	GWGCWC	2 cut(s)	481, 829
BbvI	GCAGC	8 cut(s)	324, 409, 453, 506, 508, 511, 514, 542
BccI	CCATC	2 cut(s)	238, 283
BceAI	ACGGC	2 cut(s)	102, 488
BciT130I	CCWGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	211, 245
BfaI	CTAG	2 cut(s)	263, 407
BfmI	CTRYAG	2 cut(s)	498, 528
BfuAI	ACCTGC	1 cut(s)	873
BglI	GCCNNNNNGGC	1 cut(s)	346
BisI	GCNGC	8 cut(s)	338, 423, 467, 495, 522, 525, 528, 531
BlsI	GCNGC	8 cut(s)	339, 424, 468, 496, 523, 526, 529, 532
Bme1390I	CCNGG	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	773
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	465
Bsa29I	ATCGAT	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	178, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 236, 311, 855
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	4 cut(s)	217, 380, 581, 793
BseBI	CCWGG	1 cut(s)	180
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	178, 759
BseGI	GGATG	2 cut(s)	294, 539
BseLI	CCNNNNNNNGG	4 cut(s)	185, 236, 311, 855
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	4 cut(s)	217, 380, 581, 793
BseRI	GAGGAG	1 cut(s)	819
BseXI	GCAGC	8 cut(s)	324, 409, 453, 506, 508, 511, 514, 542
BseYI	CCCAGC	1 cut(s)	788
BshFI	GGCC	3 cut(s)	775, 848, 855
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	481, 829
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	856
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	4 cut(s)	185, 236, 311, 855
BsmAI	GTCTC	2 cut(s)	211, 245
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	3 cut(s)	775, 848, 855
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	481, 829
Bsp143I	GATC	4 cut(s)	54, 58, 324, 839
BspACI	CCGC	2 cut(s)	255, 598
BspANI	GGCC	3 cut(s)	775, 848, 855
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	873
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	4 cut(s)	217, 380, 581, 793
BssAI	RCCGGY	1 cut(s)	855
BssECI	CCNNGG	2 cut(s)	178, 759
BssMI	GATC	4 cut(s)	54, 58, 324, 839
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	3 cut(s)	6, 264, 556
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	3 cut(s)	27, 363, 857
BstDEI	CTNAG	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	294, 539
BstKTI	GATC	4 cut(s)	57, 61, 327, 842
BstMAI	GTCTC	2 cut(s)	211, 245
BstMBI	GATC	4 cut(s)	54, 58, 324, 839
BstMWI	GCNNNNNNNGC	8 cut(s)	346, 500, 509, 518, 527, 530, 662, 691
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	2 cut(s)	498, 528
BstV1I	GCAGC	8 cut(s)	324, 409, 453, 506, 508, 511, 514, 542
BstXI	CCANNNNNNTGG	1 cut(s)	634
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	775, 848, 855
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	294, 539
BtsIMutI	CAGTG	2 cut(s)	240, 588
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	3 cut(s)	27, 363, 857
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	1 cut(s)	773
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	6 cut(s)	32, 62, 380, 555, 766, 878
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	4 cut(s)	56, 60, 326, 841
DpnII	GATC	4 cut(s)	54, 58, 324, 839
EaeI	YGGCCR	2 cut(s)	846, 853
Eam1104I	CTCTTC	3 cut(s)	6, 264, 556
EarI	CTCTTC	3 cut(s)	6, 264, 556
Ecl136II	GAGCTC	2 cut(s)	479, 827
Eco130I	CCWWGG	1 cut(s)	759
Eco24I	GRGCYC	2 cut(s)	481, 829
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	612
Eco53kI	GAGCTC	2 cut(s)	479, 827
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	2 cut(s)	479, 827
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	612
EcoT14I	CCWWGG	1 cut(s)	759
EcoT38I	GRGCYC	2 cut(s)	481, 829
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	6 cut(s)	35, 65, 383, 558, 769, 881
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	6 cut(s)	31, 61, 379, 554, 765, 877
Fnu4HI	GCNGC	8 cut(s)	338, 423, 467, 495, 522, 525, 528, 531
FokI	GGATG	2 cut(s)	301, 526
FriOI	GRGCYC	2 cut(s)	481, 829
Fsp4HI	GCNGC	8 cut(s)	338, 423, 467, 495, 522, 525, 528, 531
FspBI	CTAG	2 cut(s)	263, 407
GluI	GCNGC	8 cut(s)	338, 423, 467, 495, 522, 525, 528, 531
GsaI	CCCAGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	775, 848, 855
HapII	CCGG	1 cut(s)	856
HgaI	GACGC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	35, 65, 383, 558, 769, 881
HinfI	GANTC	4 cut(s)	197, 592, 623, 688
HpaII	CCGG	1 cut(s)	856
HphI	GGTGA	1 cut(s)	587
Hpy188I	TCNGA	4 cut(s)	48, 127, 250, 297
Hpy188III	TCNNGA	5 cut(s)	263, 482, 620, 723, 833
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	467, 573, 909
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	5 cut(s)	227, 365, 530, 656, 673
HpyF10VI	GCNNNNNNNGC	8 cut(s)	346, 500, 509, 518, 527, 530, 662, 691
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	738
Hsp92II	CATG	6 cut(s)	35, 65, 383, 558, 769, 881
KroI	GCCGGC	1 cut(s)	855
KroNI	GCCGGC	1 cut(s)	857
Kzo9I	GATC	4 cut(s)	54, 58, 324, 839
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	476, 824, 832
Lsp1109I	GCAGC	8 cut(s)	324, 409, 453, 506, 508, 511, 514, 542
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	263, 407
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	3 cut(s)	574, 637, 963
MalI	GATC	4 cut(s)	56, 60, 326, 841
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	4 cut(s)	54, 58, 324, 839
MboII	GAAGA	5 cut(s)	23, 251, 367, 543, 619
MhlI	GDGCHC	2 cut(s)	481, 829
MlsI	TGGCCA	1 cut(s)	848
MluCI	AATT	7 cut(s)	100, 159, 172, 318, 434, 695, 744
MluNI	TGGCCA	1 cut(s)	848
MlyI	GAGTC	2 cut(s)	206, 586
MnlI	CCTC	6 cut(s)	7, 127, 442, 719, 840, 901
Mox20I	TGGCCA	1 cut(s)	848
MroNI	GCCGGC	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	848
MseI	TTAA	5 cut(s)	83, 602, 698, 810, 923
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	848
MspA1I	CMGCKG	2 cut(s)	308, 466
MspI	CCGG	1 cut(s)	856
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	8 cut(s)	346, 500, 509, 518, 527, 530, 662, 691
NaeI	GCCGGC	1 cut(s)	857
NdeII	GATC	4 cut(s)	54, 58, 324, 839
NgoMIV	GCCGGC	1 cut(s)	855
NlaIII	CATG	6 cut(s)	35, 65, 383, 558, 769, 881
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PdiI	GCCGGC	1 cut(s)	857
PfeI	GAWTC	2 cut(s)	623, 688
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	8 cut(s)	339, 424, 468, 496, 523, 526, 529, 532
PleI	GAGTC	2 cut(s)	205, 586
PpsI	GAGTC	2 cut(s)	205, 586
Psp124BI	GAGCTC	2 cut(s)	481, 829
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	773
PstI	CTGCAG	1 cut(s)	532
PvuII	CAGCTG	2 cut(s)	308, 466
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	2 cut(s)	481, 829
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	5 cut(s)	83, 602, 698, 810, 923
SatI	GCNGC	8 cut(s)	338, 423, 467, 495, 522, 525, 528, 531
Sau3AI	GATC	4 cut(s)	54, 58, 324, 839
Sau96I	GGNCC	1 cut(s)	773
SchI	GAGTC	2 cut(s)	206, 586
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	481, 829
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	2 cut(s)	498, 528
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
Sse9I	AATT	7 cut(s)	100, 159, 172, 318, 434, 695, 744
SsiI	CCGC	2 cut(s)	255, 598
SspMI	CTAG	2 cut(s)	263, 407
SstI	GAGCTC	2 cut(s)	481, 829
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	759
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	2 cut(s)	57, 332
TasI	AATT	7 cut(s)	100, 159, 172, 318, 434, 695, 744
TfiI	GAWTC	2 cut(s)	623, 688
Tru1I	TTAA	5 cut(s)	83, 602, 698, 810, 923
Tru9I	TTAA	5 cut(s)	83, 602, 698, 810, 923
TscAI	CASTG	2 cut(s)	240, 588
TseI	GCWGC	8 cut(s)	337, 422, 466, 494, 521, 524, 527, 530
TspDTI	ATGAA	4 cut(s)	171, 282, 543, 782
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	2 cut(s)	240, 588
Van91I	CCANNNNNTGG	1 cut(s)	311
XagI	CCTNNNNNAGG	1 cut(s)	183
XapI	RAATTY	2 cut(s)	100, 744
XbaI	TCTAGA	1 cut(s)	262
XspI	CTAG	2 cut(s)	263, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.