RchiOBHm_Chr1g0382561

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002123
Physical Location & Seq
Forward (+)
67366508 .. 67368736
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60553

Sequence Viewer

Length: 1428 bp
ATGATCAAGTCGAATCCAGCAGCTTATTCTATAGTTGACCATGTTCCTAGTGTTCCAATTGGTCATTCGTCTCTACTTGGCATGCCTCCCTTTCTTCTACCTGGACAAGTGACCGGTATGCATCCATTTGTTCTGCATCAACCTGGGGTTCCCCATTCCATGCCACCACAGTTTCCCCAATCACATGTGGGGAATTTTCACTCAATTCCTGCAATGTCATCTCTCCAACAATGGCAAAACCAACAGGCTCCATCCGAGAGTTTGCAGATAGCTACACAAATTGAACCTCCATCTTCCCAAAATGATCAAAACCTGATAAGATCAGATGCAAAGTATCACTATGAAACTTCTGTTAATGGGCAACCATTTCATCAAGACTATTTGGATGTTCAAATTCGCGAAGGGGCAGAGCCTGAGCCAGTGATATCATCTTCCCTTGAGGAAGCACATGTTCTTGAGTCAATTAATAGCACTTACTTGGTCTCACCCCAAACTGATCAGAGCTTGCAACAAATGTCTTCCCAATTTACTGATTCTTTAAGATTGGATTCTCTTGAGAAGAGCAGTGAAACCAAGGCACATAAGCAGAATGTTCAGACCTTGATCGATCATGGGTTAGACGGACAAGTTTTAACGGCTGAGAAACCAAATTCTGCTACCAAGTCCTCAAAATCTGACACTCCAATCCATTCAGTCAATCTCAATGAAATTACAATAAACAATTCCCCTGGTACAGGTTTGCCCGAGTCCTTTGTCTCAACTGGACACACCAATGCACCCTCAGTGGGTAGGACTTCGGAGACCGCTCTTCTAGATGAAAGGTTATTGTTGGCTTGGATGGTTCGGACAATACCAGCTGGTGGTAGAATTAGGATCAGTTCGACGTCAATGATCTGTTATTTGTTCCAAATACAACTGCCGAATAGGCTTGGGAAGATGCTTGCACCTTTAGACTGGCATGATTACAAGAAAAAGTATGGAAAGCTAGATGATTTCGTTGCTGCTCATACTGAATTATTTGTGATTGAGGGGGACTATATTCAGCTGCGTGAAGGAGCTCAAGAGATGATAGCAGCTACAGCCGCTGTTGCCAGAGTTGCTACTCACCGCTTAAAGAAGATATCATCTCTTGATTCCAAAAATGTGGTTACTTCTACTCCAAATGCAAATAATGCTCACTTGCAGTCTGTGAAGCAGAATCATCAATTAAATGGTGTCTCTTTTGGTGTTTCGGGAGGTATGTCGAACGTAAAAATTTTGAGCAAATCCAAGGACATGAATGGGCCTGAACCTACTCCCAGCCAGTCATCTGTACTTCTTAATGGTGGAAATGGAGCTCCTCTGGACAGATCAATGGCCAATGGCCGACATTTTCTTGGGAAACAGCATGGCAGGATGACTAATTCTGCATTTACCTCCAGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

51.79

Weight (kDa)

6.72

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7725 PF24851 270 - 350 1.5e-29 Domain of unknown function (DUF7725)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 887
AccB7I CCANNNNNTGG 1 cut(s) 860
AccBSI CCGCTC 1 cut(s) 806
AccII CGCG 1 cut(s) 399
AciI CCGC 3 cut(s) 804, 1083, 1108
AclWI GGATC 1 cut(s) 881
AcoI YGGCCR 2 cut(s) 1356, 1363
AcsI RAATTY 4 cut(s) 193, 393, 649, 1254
AcyI GRCGYC 1 cut(s) 884
AfaI GTAC 2 cut(s) 733, 1314
AfiI CCNNNNNNNGG 3 cut(s) 734, 785, 860
AflIII ACRYGT 2 cut(s) 184, 448
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 2 cut(s) 284, 392
AjnI CCWGG 3 cut(s) 100, 142, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 9 cut(s) 23, 272, 504, 857, 985, 1045, 1058, 1076, 1337
AluI AGCT 9 cut(s) 23, 272, 504, 857, 985, 1045, 1058, 1076, 1337
Alw21I GWGCWC 2 cut(s) 1060, 1339
Alw26I GTCTC 5 cut(s) 75, 487, 760, 794, 1222
AlwI GGATC 1 cut(s) 881
AlwNI CAGNNNCTG 2 cut(s) 413, 1085
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 3 cut(s) 1283, 1356, 1363
ApeKI GCWGC 4 cut(s) 20, 1001, 1045, 1073
ApoI RAATTY 4 cut(s) 193, 393, 649, 1254
AseI ATTAAT 1 cut(s) 465
AsiGI ACCGGT 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 1283
AsuHPI GGTGA 2 cut(s) 477, 1097
AvaI CYCGRG 1 cut(s) 743
BalI TGGCCA 1 cut(s) 1358
BanII GRGCYC 2 cut(s) 1060, 1339
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 2 cut(s) 1060, 1339
BbvI GCAGC 4 cut(s) 32, 988, 1032, 1085
BccI CCATC 3 cut(s) 259, 298, 832
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 3 cut(s) 102, 144, 729
BclI TGATCA 3 cut(s) 3, 304, 496
BcoDI GTCTC 5 cut(s) 75, 487, 760, 794, 1222
BfaI CTAG 3 cut(s) 48, 812, 986
BfmI CTRYAG 2 cut(s) 30, 1077
BglI GCCNNNNNGGC 1 cut(s) 925
BisI GCNGC 5 cut(s) 21, 1002, 1046, 1074, 1083
BlsI GCNGC 5 cut(s) 22, 1003, 1047, 1075, 1084
Bme1390I CCNGG 3 cut(s) 102, 144, 729
BmeT110I CYCGRG 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 1283
BmiI GGNNCC 2 cut(s) 150, 249
BmrFI CCNGG 3 cut(s) 102, 144, 729
BmsI GCATC 4 cut(s) 130, 145, 316, 927
BpiI GAAGAC 1 cut(s) 510
BpmI CTGGAG 1 cut(s) 1402
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 4 cut(s) 458, 476, 575, 1044
Bsa29I ATCGAT 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 884
BsaI GGTCTC 2 cut(s) 487, 794
BsaJI CCNNGG 4 cut(s) 143, 573, 727, 1269
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 1141, 1171
Bsc4I CCNNNNNNNGG 3 cut(s) 734, 785, 860
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 4 cut(s) 419, 766, 959, 1303
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 3 cut(s) 102, 144, 729
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 4 cut(s) 143, 573, 727, 1269
BseGI GGATG 5 cut(s) 121, 251, 391, 843, 1401
BseLI CCNNNNNNNGG 3 cut(s) 734, 785, 860
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 3 cut(s) 405, 630, 795
BseNI ACTGG 4 cut(s) 419, 766, 959, 1303
BseRI GAGGAG 1 cut(s) 1329
BseXI GCAGC 4 cut(s) 32, 988, 1032, 1085
BseYI CCCAGC 1 cut(s) 1298
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 3 cut(s) 1285, 1358, 1365
BshTI ACCGGT 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 606
BsiHKAI GWGCWC 2 cut(s) 1060, 1339
BsiHKCI CYCGRG 1 cut(s) 743
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 1046
BslI CCNNNNNNNGG 3 cut(s) 734, 785, 860
BsmAI GTCTC 5 cut(s) 75, 487, 760, 794, 1222
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 1046
BsnI GGCC 3 cut(s) 1285, 1358, 1365
Bso31I GGTCTC 2 cut(s) 487, 794
BsoBI CYCGRG 1 cut(s) 743
Bsp1286I GDGCHC 2 cut(s) 1060, 1339
Bsp143I GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
Bsp68I TCGCGA 1 cut(s) 399
BspACI CCGC 3 cut(s) 804, 1083, 1108
BspANI GGCC 3 cut(s) 1285, 1358, 1365
BspCNI CTCAG 3 cut(s) 406, 631, 794
BspDI ATCGAT 1 cut(s) 606
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 2 cut(s) 150, 249
BspPI GGATC 1 cut(s) 881
BspQI GCTCTTC 2 cut(s) 554, 813
BspTNI GGTCTC 2 cut(s) 487, 794
BsrBI CCGCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 4 cut(s) 419, 766, 959, 1303
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 143, 573, 727, 1269
BssMI GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
BssNI GRCGYC 1 cut(s) 884
BssT1I CCWWGG 2 cut(s) 573, 1269
Bst2UI CCWGG 3 cut(s) 102, 144, 729
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 554, 813
BstACI GRCGYC 1 cut(s) 884
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstC8I GCNNGC 3 cut(s) 83, 506, 942
BstDEI CTNAG 3 cut(s) 414, 639, 781
BstENI CCTNNNNNAGG 1 cut(s) 732
BstF5I GGATG 5 cut(s) 121, 251, 391, 843, 1401
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 9 cut(s) 6, 307, 323, 499, 606, 610, 876, 894, 1352
BstMAI GTCTC 5 cut(s) 75, 487, 760, 794, 1222
BstMBI GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
BstMWI GCNNNNNNNGC 6 cut(s) 925, 1079, 1082, 1088, 1097, 1172
BstNI CCWGG 3 cut(s) 102, 144, 729
BstNSI RCATGY 3 cut(s) 85, 188, 452
BstSCI CCNGG 3 cut(s) 100, 142, 727
BstSFI CTRYAG 2 cut(s) 30, 1077
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 4 cut(s) 32, 988, 1032, 1085
BstV2I GAAGAC 1 cut(s) 510
BstXI CCANNNNNNTGG 1 cut(s) 1144
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 3 cut(s) 1285, 1358, 1365
BsuTUI ATCGAT 1 cut(s) 606
BtsCI GGATG 5 cut(s) 121, 251, 391, 843, 1401
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 426, 571, 789
BtuMI TCGCGA 1 cut(s) 399
Cac8I GCNNGC 3 cut(s) 83, 506, 942
CaiI CAGNNNCTG 2 cut(s) 413, 1085
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 1283
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 2 cut(s) 732, 1313
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 9 cut(s) 41, 82, 160, 185, 449, 611, 959, 1276, 1388
CviQI GTAC 2 cut(s) 732, 1313
DdeI CTNAG 3 cut(s) 414, 639, 781
DpnI GATC 9 cut(s) 5, 306, 322, 498, 605, 609, 875, 893, 1351
DpnII GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
EaeI YGGCCR 2 cut(s) 1356, 1363
Eam1104I CTCTTC 2 cut(s) 554, 813
EarI CTCTTC 2 cut(s) 554, 813
Ecl136II GAGCTC 2 cut(s) 1058, 1337
Eco130I CCWWGG 2 cut(s) 573, 1269
Eco24I GRGCYC 2 cut(s) 1060, 1339
Eco31I GGTCTC 2 cut(s) 487, 794
Eco32I GATATC 2 cut(s) 426, 1122
Eco53kI GAGCTC 2 cut(s) 1058, 1337
Eco88I CYCGRG 1 cut(s) 743
EcoICRI GAGCTC 2 cut(s) 1058, 1337
EcoNI CCTNNNNNAGG 1 cut(s) 732
EcoRII CCWGG 3 cut(s) 100, 142, 727
EcoRV GATATC 2 cut(s) 426, 1122
EcoT14I CCWWGG 2 cut(s) 573, 1269
EcoT22I ATGCAT 1 cut(s) 123
EcoT38I GRGCYC 2 cut(s) 1060, 1339
ErhI CCWWGG 2 cut(s) 573, 1269
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 9 cut(s) 44, 85, 163, 188, 452, 614, 962, 1279, 1391
FaqI GGGAC 1 cut(s) 1046
FatI CATG 9 cut(s) 40, 81, 159, 184, 448, 610, 958, 1275, 1387
FbaI TGATCA 3 cut(s) 3, 304, 496
Fnu4HI GCNGC 5 cut(s) 21, 1002, 1046, 1074, 1083
FokI GGATG 5 cut(s) 108, 238, 398, 850, 1408
FriOI GRGCYC 2 cut(s) 1060, 1339
Fsp4HI GCNGC 5 cut(s) 21, 1002, 1046, 1074, 1083
FspBI CTAG 3 cut(s) 48, 812, 986
GluI GCNGC 5 cut(s) 21, 1002, 1046, 1074, 1083
GsaI CCCAGC 1 cut(s) 1302
GsuI CTGGAG 1 cut(s) 1402
HaeIII GGCC 3 cut(s) 1285, 1358, 1365
HapII CCGG 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 884
Hin1II CATG 9 cut(s) 44, 85, 163, 188, 452, 614, 962, 1279, 1391
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 7 cut(s) 13, 458, 533, 548, 746, 1133, 1198
HpaII CCGG 1 cut(s) 114
HphI GGTGA 2 cut(s) 477, 1097
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 7 cut(s) 256, 325, 501, 597, 676, 799, 846
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 886
HpyAV CCTTC 2 cut(s) 395, 1046
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 2 cut(s) 884, 1248
HpyF10VI GCNNNNNNNGC 6 cut(s) 925, 1079, 1082, 1088, 1097, 1172
HpyF3I CTNAG 3 cut(s) 414, 639, 781
HpySE526I ACGT 2 cut(s) 884, 1248
Hsp92I GRCGYC 1 cut(s) 884
Hsp92II CATG 9 cut(s) 44, 85, 163, 188, 452, 614, 962, 1279, 1391
Ksp22I TGATCA 3 cut(s) 3, 304, 496
Kzo9I GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
LguI GCTCTTC 2 cut(s) 554, 813
LmnI GCTCC 4 cut(s) 253, 1055, 1334, 1342
Lsp1109I GCAGC 4 cut(s) 32, 988, 1032, 1085
LweI GCATC 4 cut(s) 130, 145, 316, 927
MaeI CTAG 3 cut(s) 48, 812, 986
MaeII ACGT 2 cut(s) 884, 1248
MaeIII GTNAC 2 cut(s) 109, 1147
MalI GATC 9 cut(s) 5, 306, 322, 498, 605, 609, 875, 893, 1351
MbiI CCGCTC 1 cut(s) 806
MboI GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
MboII GAAGA 8 cut(s) 86, 285, 423, 510, 571, 800, 946, 1129
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 1060, 1339
MlsI TGGCCA 1 cut(s) 1358
MluNI TGGCCA 1 cut(s) 1358
MlyI GAGTC 2 cut(s) 467, 755
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 9 cut(s) 96, 297, 433, 676, 790, 1021, 1229, 1350, 1426
Mox20I TGGCCA 1 cut(s) 1358
Mph1103I ATGCAT 1 cut(s) 123
MscI TGGCCA 1 cut(s) 1358
MseI TTAA 7 cut(s) 354, 465, 539, 632, 1112, 1208, 1320
MslI CAYNNNNRTG 1 cut(s) 771
Msp20I TGGCCA 1 cut(s) 1358
MspA1I CMGCKG 3 cut(s) 857, 1045, 1085
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 3 cut(s) 102, 144, 729
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 3 cut(s) 102, 144, 729
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 6 cut(s) 925, 1079, 1082, 1088, 1097, 1172
NdeII GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
NlaIII CATG 9 cut(s) 44, 85, 163, 188, 452, 614, 962, 1279, 1391
NlaIV GGNNCC 2 cut(s) 150, 249
NmuCI GTSAC 1 cut(s) 109
NruI TCGCGA 1 cut(s) 399
NsiI ATGCAT 1 cut(s) 123
NspI RCATGY 3 cut(s) 85, 188, 452
PaeI GCATGC 1 cut(s) 85
PciI ACATGT 2 cut(s) 184, 448
PciSI GCTCTTC 2 cut(s) 554, 813
PfeI GAWTC 5 cut(s) 13, 533, 548, 1133, 1198
PflMI CCANNNNNTGG 1 cut(s) 860
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 5 cut(s) 22, 1003, 1047, 1075, 1084
PleI GAGTC 2 cut(s) 466, 754
PpsI GAGTC 2 cut(s) 466, 754
PscI ACATGT 2 cut(s) 184, 448
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 2 cut(s) 1060, 1339
Psp6I CCWGG 3 cut(s) 100, 142, 727
PspFI CCCAGC 1 cut(s) 1298
PspGI CCWGG 3 cut(s) 100, 142, 727
PspN4I GGNNCC 2 cut(s) 150, 249
PspPI GGNCC 1 cut(s) 1283
PstNI CAGNNNCTG 2 cut(s) 413, 1085
PvuII CAGCTG 2 cut(s) 857, 1045
RruI TCGCGA 1 cut(s) 399
RsaI GTAC 2 cut(s) 733, 1314
RsaNI GTAC 2 cut(s) 732, 1313
RseI CAYNNNNRTG 1 cut(s) 771
SacI GAGCTC 2 cut(s) 1060, 1339
SapI GCTCTTC 2 cut(s) 554, 813
SaqAI TTAA 7 cut(s) 354, 465, 539, 632, 1112, 1208, 1320
SatI GCNGC 5 cut(s) 21, 1002, 1046, 1074, 1083
Sau3AI GATC 9 cut(s) 3, 304, 320, 496, 603, 607, 873, 891, 1349
Sau96I GGNCC 1 cut(s) 1283
SchI GAGTC 2 cut(s) 467, 755
ScrFI CCNGG 3 cut(s) 102, 144, 729
SduI GDGCHC 2 cut(s) 1060, 1339
SfaNI GCATC 4 cut(s) 130, 145, 316, 927
SfcI CTRYAG 2 cut(s) 30, 1077
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 4 cut(s) 437, 455, 554, 1059
SmoI CTYRAG 4 cut(s) 437, 455, 554, 1059
SphI GCATGC 1 cut(s) 85
SsiI CCGC 3 cut(s) 804, 1083, 1108
SspMI CTAG 3 cut(s) 48, 812, 986
SstI GAGCTC 2 cut(s) 1060, 1339
StyD4I CCNGG 3 cut(s) 100, 142, 727
StyI CCWWGG 2 cut(s) 573, 1269
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 2 cut(s) 887, 1251
TaqI TCGA 4 cut(s) 11, 606, 881, 1244
TatI WGTACW 1 cut(s) 1312
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 5 cut(s) 13, 533, 548, 1133, 1198
Tru1I TTAA 7 cut(s) 354, 465, 539, 632, 1112, 1208, 1320
Tru9I TTAA 7 cut(s) 354, 465, 539, 632, 1112, 1208, 1320
TscAI CASTG 3 cut(s) 426, 571, 789
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 4 cut(s) 20, 1001, 1045, 1073
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 357, 359, 720, 831, 1292
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 3 cut(s) 426, 571, 789
Van91I CCANNNNNTGG 1 cut(s) 860
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 732
XapI RAATTY 4 cut(s) 193, 393, 649, 1254
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 3 cut(s) 85, 188, 452
XspI CTAG 3 cut(s) 48, 812, 986
ZraI GACGTC 1 cut(s) 885
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.