isoform X1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF7725 | PF24851 | 620 - 690 | 5.7e-38 | Domain of unknown function (DUF7725) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 693, 1389 |
| AarI | CACCTGC | 1 cut(s) | 1898 |
| Acc36I | ACCTGC | 4 cut(s) | 618, 1276, 1771, 1898 |
| Acc65I | GGTACC | 1 cut(s) | 1207 |
| AccB1I | GGYRCC | 3 cut(s) | 1207, 1459, 1633 |
| AccII | CGCG | 3 cut(s) | 22, 24, 72 |
| AciI | CCGC | 9 cut(s) | 11, 15, 24, 58, 244, 784, 1463, 2133, 2197 |
| AclWI | GGATC | 2 cut(s) | 734, 1358 |
| AcoI | YGGCCR | 2 cut(s) | 12, 2458 |
| AcsI | RAATTY | 4 cut(s) | 949, 1042, 1569, 1917 |
| AcuI | CTGAAG | 2 cut(s) | 377, 1728 |
| AfaI | GTAC | 5 cut(s) | 793, 870, 1209, 2382, 2434 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 91, 723, 1073, 1910, 1974 |
| AflIII | ACRYGT | 2 cut(s) | 370, 1228 |
| AgsI | TTSAA | 8 cut(s) | 251, 335, 626, 881, 954, 1071, 2220, 2389 |
| AhlI | ACTAGT | 1 cut(s) | 1781 |
| AjnI | CCWGG | 3 cut(s) | 497, 1159, 2290 |
| Alw21I | GWGCWC | 2 cut(s) | 358, 2471 |
| Alw26I | GTCTC | 5 cut(s) | 82, 844, 1284, 1543, 2303 |
| AlwI | GGATC | 2 cut(s) | 734, 1358 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2105 |
| Ama87I | CYCGRG | 1 cut(s) | 1508 |
| AoxI | GGCC | 7 cut(s) | 12, 93, 136, 714, 1025, 2363, 2458 |
| ApaI | GGGCCC | 1 cut(s) | 1029 |
| ApoI | RAATTY | 4 cut(s) | 949, 1042, 1569, 1917 |
| AscI | GGCGCGCC | 1 cut(s) | 70 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 513, 684, 1843 |
| Asp718I | GGTACC | 1 cut(s) | 1207 |
| AspLEI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2080 |
| AspS9I | GGNCC | 5 cut(s) | 94, 715, 1025, 1026, 1219 |
| AsuC2I | CCSGG | 1 cut(s) | 656 |
| AsuHPI | GGTGA | 2 cut(s) | 2018, 2186 |
| AvaI | CYCGRG | 1 cut(s) | 1508 |
| AvaII | GGWCC | 1 cut(s) | 1219 |
| BaeGI | GKGCMC | 2 cut(s) | 1029, 1462 |
| BanI | GGYRCC | 3 cut(s) | 1207, 1459, 1633 |
| BanII | GRGCYC | 2 cut(s) | 1029, 2471 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 861, 893 |
| BauI | CACGAG | 1 cut(s) | 732 |
| BbsI | GAAGAC | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 2 cut(s) | 358, 2471 |
| BccI | CCATC | 6 cut(s) | 93, 206, 838, 1132, 1318, 1667 |
| BceAI | ACGGC | 1 cut(s) | 59 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1085, 1119 |
| BciT130I | CCWGG | 3 cut(s) | 499, 1161, 2292 |
| BclI | TGATCA | 2 cut(s) | 1552, 1660 |
| BcnI | CCSGG | 1 cut(s) | 656 |
| BcoDI | GTCTC | 5 cut(s) | 82, 844, 1284, 1543, 2303 |
| BcuI | ACTAGT | 1 cut(s) | 1781 |
| BfaI | CTAG | 7 cut(s) | 134, 261, 482, 995, 1782, 2022, 2361 |
| BfmI | CTRYAG | 3 cut(s) | 1689, 2097, 2127 |
| BfuAI | ACCTGC | 4 cut(s) | 618, 1276, 1771, 1898 |
| BglII | AGATCT | 1 cut(s) | 320 |
| BlpI | GCTNAGC | 1 cut(s) | 2465 |
| Bme1390I | CCNGG | 4 cut(s) | 499, 656, 1161, 2292 |
| Bme18I | GGWCC | 1 cut(s) | 1219 |
| BmeT110I | CYCGRG | 1 cut(s) | 1508 |
| BmgT120I | GGNCC | 5 cut(s) | 94, 715, 1025, 1026, 1219 |
| BmiI | GGNNCC | 9 cut(s) | 1027, 1028, 1113, 1209, 1221, 1308, 1461, 1635, 1761 |
| BmrFI | CCNGG | 4 cut(s) | 499, 656, 1161, 2292 |
| BmrI | ACTGGG | 1 cut(s) | 1500 |
| BmuI | ACTGGG | 1 cut(s) | 1500 |
| BpiI | GAAGAC | 1 cut(s) | 516 |
| BpmI | CTGGAG | 2 cut(s) | 2163, 2313 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2443 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2465 |
| BpuEI | CTTGAG | 3 cut(s) | 660, 905, 1631 |
| BpuMI | CCSGG | 1 cut(s) | 656 |
| BsaI | GGTCTC | 2 cut(s) | 1543, 2303 |
| BsaJI | CCNNGG | 5 cut(s) | 498, 1159, 1453, 1629, 2201 |
| BsaWI | WCCGGW | 1 cut(s) | 1636 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 91, 723, 1073, 1910, 1974 |
| Bse118I | RCCGGY | 1 cut(s) | 2460 |
| Bse1I | ACTGG | 6 cut(s) | 179, 1078, 1495, 1979, 2180, 2371 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseBI | CCWGG | 3 cut(s) | 499, 1161, 2292 |
| BseDI | CCNNGG | 5 cut(s) | 498, 1159, 1453, 1629, 2201 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 91, 723, 1073, 1910, 1974 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 6 cut(s) | 315, 831, 1103, 1305, 2456, 2457 |
| BseNI | ACTGG | 6 cut(s) | 179, 1078, 1495, 1979, 2180, 2371 |
| BsePI | GCGCGC | 2 cut(s) | 20, 70 |
| BseRI | GAGGAG | 1 cut(s) | 128 |
| BseSI | GKGCMC | 2 cut(s) | 1029, 1462 |
| BseX3I | CGGCCG | 1 cut(s) | 12 |
| BseYI | CCCAGC | 2 cut(s) | 52, 1106 |
| BsgI | GTGCAG | 1 cut(s) | 1806 |
| Bsh1236I | CGCG | 3 cut(s) | 22, 24, 72 |
| Bsh1285I | CGRYCG | 1 cut(s) | 15 |
| BshFI | GGCC | 7 cut(s) | 14, 95, 138, 716, 1027, 2365, 2460 |
| BshNI | GGYRCC | 3 cut(s) | 1207, 1459, 1633 |
| BsiEI | CGRYCG | 1 cut(s) | 15 |
| BsiHKAI | GWGCWC | 2 cut(s) | 358, 2471 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1508 |
| BsiSI | CCGG | 4 cut(s) | 655, 1637, 1904, 2461 |
| BslFI | GGGAC | 2 cut(s) | 928, 1205 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 91, 723, 1073, 1910, 1974 |
| BsmAI | GTCTC | 5 cut(s) | 82, 844, 1284, 1543, 2303 |
| BsmBI | CGTCTC | 2 cut(s) | 82, 1284 |
| BsmFI | GGGAC | 2 cut(s) | 928, 1205 |
| BsnI | GGCC | 7 cut(s) | 14, 95, 138, 716, 1027, 2365, 2460 |
| Bso31I | GGTCTC | 2 cut(s) | 1543, 2303 |
| BsoBI | CYCGRG | 1 cut(s) | 1508 |
| Bsp120I | GGGCCC | 1 cut(s) | 1025 |
| Bsp1286I | GDGCHC | 4 cut(s) | 358, 1029, 1462, 2471 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2465 |
| BspACI | CCGC | 9 cut(s) | 11, 15, 24, 58, 244, 784, 1463, 2133, 2197 |
| BspANI | GGCC | 7 cut(s) | 14, 95, 138, 716, 1027, 2365, 2460 |
| BspCNI | CTCAG | 6 cut(s) | 316, 832, 1102, 1306, 2456, 2457 |
| BspFNI | CGCG | 3 cut(s) | 22, 24, 72 |
| BspHI | TCATGA | 2 cut(s) | 226, 406 |
| BspLI | GGNNCC | 9 cut(s) | 1027, 1028, 1113, 1209, 1221, 1308, 1461, 1635, 1761 |
| BspMAI | CTGCAG | 2 cut(s) | 1693, 2131 |
| BspMI | ACCTGC | 4 cut(s) | 618, 1276, 1771, 1898 |
| BspPI | GGATC | 2 cut(s) | 734, 1358 |
| BspT107I | GGYRCC | 3 cut(s) | 1207, 1459, 1633 |
| BspTNI | GGTCTC | 2 cut(s) | 1543, 2303 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrFI | RCCGGY | 1 cut(s) | 2460 |
| BsrI | ACTGG | 6 cut(s) | 179, 1078, 1495, 1979, 2180, 2371 |
| BssAI | RCCGGY | 1 cut(s) | 2460 |
| BssECI | CCNNGG | 5 cut(s) | 498, 1159, 1453, 1629, 2201 |
| BssHII | GCGCGC | 2 cut(s) | 20, 70 |
| BssSI | CACGAG | 1 cut(s) | 732 |
| BssT1I | CCWWGG | 3 cut(s) | 1453, 1629, 2201 |
| Bst2BI | CACGAG | 1 cut(s) | 732 |
| Bst2UI | CCWGG | 3 cut(s) | 499, 1161, 2292 |
| Bst4CI | ACNGT | 6 cut(s) | 705, 868, 1290, 1622, 1816, 2030 |
| Bst6I | CTCTTC | 2 cut(s) | 1425, 2155 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2117 |
| BstDEI | CTNAG | 6 cut(s) | 324, 840, 1089, 1314, 2443, 2465 |
| BstFNI | CGCG | 3 cut(s) | 22, 24, 72 |
| BstHHI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2080 |
| BstMAI | GTCTC | 5 cut(s) | 82, 844, 1284, 1543, 2303 |
| BstMCI | CGRYCG | 1 cut(s) | 15 |
| BstNI | CCWGG | 3 cut(s) | 499, 1161, 2292 |
| BstNSI | RCATGY | 4 cut(s) | 374, 473, 1232, 1823 |
| BstSCI | CCNGG | 4 cut(s) | 497, 654, 1159, 2290 |
| BstSFI | CTRYAG | 3 cut(s) | 1689, 2097, 2127 |
| BstSLI | GKGCMC | 2 cut(s) | 1029, 1462 |
| BstUI | CGCG | 3 cut(s) | 22, 24, 72 |
| BstV2I | GAAGAC | 1 cut(s) | 516 |
| BstX2I | RGATCY | 1 cut(s) | 320 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1106 |
| BstYI | RGATCY | 1 cut(s) | 320 |
| BstZI | CGGCCG | 1 cut(s) | 12 |
| BsuRI | GGCC | 7 cut(s) | 14, 95, 138, 716, 1027, 2365, 2460 |
| BtsIMutI | CAGTG | 5 cut(s) | 1295, 1488, 1627, 1972, 2187 |
| BveI | ACCTGC | 4 cut(s) | 618, 1276, 1771, 1898 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2105 |
| CciI | TCATGA | 2 cut(s) | 226, 406 |
| CciNI | GCGGCCGC | 1 cut(s) | 12 |
| CfoI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2080 |
| Cfr10I | RCCGGY | 1 cut(s) | 2460 |
| Cfr13I | GGNCC | 5 cut(s) | 94, 715, 1025, 1026, 1219 |
| CseI | GACGC | 1 cut(s) | 1942 |
| Csp6I | GTAC | 5 cut(s) | 792, 869, 1208, 2381, 2433 |
| CviQI | GTAC | 5 cut(s) | 792, 869, 1208, 2381, 2433 |
| DdeI | CTNAG | 6 cut(s) | 324, 840, 1089, 1314, 2443, 2465 |
| EaeI | YGGCCR | 2 cut(s) | 12, 2458 |
| EagI | CGGCCG | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 2 cut(s) | 1425, 2155 |
| EarI | CTCTTC | 2 cut(s) | 1425, 2155 |
| Ecl136II | GAGCTC | 1 cut(s) | 2469 |
| EclXI | CGGCCG | 1 cut(s) | 12 |
| Eco130I | CCWWGG | 3 cut(s) | 1453, 1629, 2201 |
| Eco24I | GRGCYC | 2 cut(s) | 1029, 2471 |
| Eco31I | GGTCTC | 2 cut(s) | 1543, 2303 |
| Eco32I | GATATC | 2 cut(s) | 1329, 2211 |
| Eco47I | GGWCC | 1 cut(s) | 1219 |
| Eco52I | CGGCCG | 1 cut(s) | 12 |
| Eco53kI | GAGCTC | 1 cut(s) | 2469 |
| Eco57I | CTGAAG | 2 cut(s) | 377, 1728 |
| Eco88I | CYCGRG | 1 cut(s) | 1508 |
| EcoICRI | GAGCTC | 1 cut(s) | 2469 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1025, 1026 |
| EcoRI | GAATTC | 1 cut(s) | 1917 |
| EcoRII | CCWGG | 3 cut(s) | 497, 1159, 2290 |
| EcoRV | GATATC | 2 cut(s) | 1329, 2211 |
| EcoT14I | CCWWGG | 3 cut(s) | 1453, 1629, 2201 |
| EcoT22I | ATGCAT | 3 cut(s) | 864, 964, 1197 |
| EcoT38I | GRGCYC | 2 cut(s) | 1029, 2471 |
| ErhI | CCWWGG | 3 cut(s) | 1453, 1629, 2201 |
| Esp3I | CGTCTC | 2 cut(s) | 82, 1284 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 498, 530, 501, 533, 672, 704 |
| FaqI | GGGAC | 2 cut(s) | 928, 1205 |
| FauI | CCCGC | 2 cut(s) | 65, 777 |
| FauNDI | CATATG | 2 cut(s) | 285, 858 |
| FbaI | TGATCA | 2 cut(s) | 1552, 1660 |
| FriOI | GRGCYC | 2 cut(s) | 1029, 2471 |
| FspBI | CTAG | 7 cut(s) | 134, 261, 482, 995, 1782, 2022, 2361 |
| GlaI | GCGC | 5 cut(s) | 21, 23, 71, 73, 2079 |
| GsaI | CCCAGC | 2 cut(s) | 56, 1110 |
| GsuI | CTGGAG | 2 cut(s) | 2163, 2313 |
| HaeIII | GGCC | 7 cut(s) | 14, 95, 138, 716, 1027, 2365, 2460 |
| HapII | CCGG | 4 cut(s) | 655, 1637, 1904, 2461 |
| HgaI | GACGC | 1 cut(s) | 1942 |
| HhaI | GCGC | 5 cut(s) | 22, 24, 72, 74, 2080 |
| Hin6I | GCGC | 5 cut(s) | 20, 22, 70, 72, 2078 |
| HinP1I | GCGC | 5 cut(s) | 20, 22, 70, 72, 2078 |
| HincII | GTYRAC | 2 cut(s) | 762, 1812 |
| HindII | GTYRAC | 2 cut(s) | 762, 1812 |
| HindIII | AAGCTT | 4 cut(s) | 389, 720, 2003, 2278 |
| HinfI | GANTC | 8 cut(s) | 929, 1397, 1469, 1511, 1604, 2191, 2257, 2333 |
| HpaII | CCGG | 4 cut(s) | 655, 1637, 1904, 2461 |
| HphI | GGTGA | 2 cut(s) | 2018, 2186 |
| Hpy166II | GTNNAC | 3 cut(s) | 190, 762, 1812 |
| Hpy8I | GTNNAC | 3 cut(s) | 190, 762, 1812 |
| Hpy99I | CGWCG | 1 cut(s) | 1936 |
| HpyAV | CCTTC | 5 cut(s) | 524, 1077, 1155, 1752, 2172 |
| HpyCH4III | ACNGT | 6 cut(s) | 705, 868, 1290, 1622, 1816, 2030 |
| HpyCH4IV | ACGT | 2 cut(s) | 559, 790 |
| HpyF3I | CTNAG | 6 cut(s) | 324, 840, 1089, 1314, 2443, 2465 |
| HpySE526I | ACGT | 2 cut(s) | 559, 790 |
| HspAI | GCGC | 5 cut(s) | 20, 22, 70, 72, 2078 |
| KpnI | GGTACC | 1 cut(s) | 1211 |
| KroI | GCCGGC | 1 cut(s) | 2460 |
| KroNI | GCCGGC | 1 cut(s) | 2462 |
| Ksp22I | TGATCA | 2 cut(s) | 1552, 1660 |
| LmnI | GCTCC | 6 cut(s) | 397, 415, 1312, 1639, 2075, 2402 |
| MaeI | CTAG | 7 cut(s) | 134, 261, 482, 995, 1782, 2022, 2361 |
| MaeII | ACGT | 2 cut(s) | 559, 790 |
| MaeIII | GTNAC | 4 cut(s) | 560, 1168, 2024, 2173 |
| MboII | GAAGA | 9 cut(s) | 263, 509, 521, 1145, 1344, 1412, 2142, 2218, 2538 |
| MfeI | CAATTG | 1 cut(s) | 1515 |
| MflI | RGATCY | 1 cut(s) | 320 |
| MhlI | GDGCHC | 4 cut(s) | 358, 1029, 1462, 2471 |
| MlyI | GAGTC | 2 cut(s) | 1520, 2185 |
| MmeI | TCCRAC | 3 cut(s) | 99, 1309, 1650 |
| Mph1103I | ATGCAT | 3 cut(s) | 864, 964, 1197 |
| MroNI | GCCGGC | 1 cut(s) | 2460 |
| MroXI | GAANNNNTTC | 3 cut(s) | 513, 684, 1843 |
| MslI | CAYNNNNRTG | 4 cut(s) | 38, 375, 1824, 1977 |
| MspA1I | CMGCKG | 3 cut(s) | 17, 244, 2102 |
| MspI | CCGG | 4 cut(s) | 655, 1637, 1904, 2461 |
| MspR9I | CCNGG | 4 cut(s) | 499, 656, 1161, 2292 |
| MunI | CAATTG | 1 cut(s) | 1515 |
| MvaI | CCWGG | 3 cut(s) | 499, 1161, 2292 |
| MvnI | CGCG | 3 cut(s) | 22, 24, 72 |
| NaeI | GCCGGC | 1 cut(s) | 2462 |
| NciI | CCSGG | 1 cut(s) | 656 |
| NdeI | CATATG | 2 cut(s) | 285, 858 |
| NgoMIV | GCCGGC | 1 cut(s) | 2460 |
| NlaIV | GGNNCC | 9 cut(s) | 1027, 1028, 1113, 1209, 1221, 1308, 1461, 1635, 1761 |
| NmuCI | GTSAC | 3 cut(s) | 560, 1168, 2024 |
| NotI | GCGGCCGC | 1 cut(s) | 12 |
| NsiI | ATGCAT | 3 cut(s) | 864, 964, 1197 |
| NspI | RCATGY | 4 cut(s) | 374, 473, 1232, 1823 |
| PaeI | GCATGC | 2 cut(s) | 473, 1823 |
| PaeR7I | CTCGAG | 1 cut(s) | 1508 |
| PagI | TCATGA | 2 cut(s) | 226, 406 |
| PalAI | GGCGCGCC | 1 cut(s) | 70 |
| PaqCI | CACCTGC | 1 cut(s) | 1898 |
| PauI | GCGCGC | 2 cut(s) | 20, 70 |
| PciI | ACATGT | 2 cut(s) | 370, 1228 |
| PdiI | GCCGGC | 1 cut(s) | 2462 |
| PdmI | GAANNNNTTC | 3 cut(s) | 513, 684, 1843 |
| PfeI | GAWTC | 6 cut(s) | 929, 1397, 1469, 1604, 2257, 2333 |
| PfoI | TCCNGGA | 2 cut(s) | 654, 2290 |
| PleI | GAGTC | 2 cut(s) | 1519, 2185 |
| PpsI | GAGTC | 2 cut(s) | 1519, 2185 |
| PscI | ACATGT | 2 cut(s) | 370, 1228 |
| PsiI | TTATAA | 2 cut(s) | 693, 1389 |
| Psp124BI | GAGCTC | 1 cut(s) | 2471 |
| Psp6I | CCWGG | 3 cut(s) | 497, 1159, 2290 |
| PspFI | CCCAGC | 2 cut(s) | 52, 1106 |
| PspGI | CCWGG | 3 cut(s) | 497, 1159, 2290 |
| PspN4I | GGNNCC | 9 cut(s) | 1027, 1028, 1113, 1209, 1221, 1308, 1461, 1635, 1761 |
| PspOMI | GGGCCC | 1 cut(s) | 1025 |
| PspPI | GGNCC | 5 cut(s) | 94, 715, 1025, 1026, 1219 |
| PstI | CTGCAG | 2 cut(s) | 1693, 2131 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2105 |
| PsuI | RGATCY | 1 cut(s) | 320 |
| PteI | GCGCGC | 2 cut(s) | 20, 70 |
| PvuII | CAGCTG | 1 cut(s) | 2102 |
| RsaI | GTAC | 5 cut(s) | 793, 870, 1209, 2382, 2434 |
| RsaNI | GTAC | 5 cut(s) | 792, 869, 1208, 2381, 2433 |
| RseI | CAYNNNNRTG | 4 cut(s) | 38, 375, 1824, 1977 |
| SacI | GAGCTC | 1 cut(s) | 2471 |
| Sau96I | GGNCC | 5 cut(s) | 94, 715, 1025, 1026, 1219 |
| SchI | GAGTC | 2 cut(s) | 1520, 2185 |
| ScrFI | CCNGG | 4 cut(s) | 499, 656, 1161, 2292 |
| SduI | GDGCHC | 4 cut(s) | 358, 1029, 1462, 2471 |
| SfcI | CTRYAG | 3 cut(s) | 1689, 2097, 2127 |
| Sfr274I | CTCGAG | 1 cut(s) | 1508 |
| SgsI | GGCGCGCC | 1 cut(s) | 70 |
| SinI | GGWCC | 1 cut(s) | 1219 |
| SlaI | CTCGAG | 1 cut(s) | 1508 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 38, 375, 1824, 1977 |
| SmlI | CTYRAG | 4 cut(s) | 675, 884, 1508, 1610 |
| SmoI | CTYRAG | 4 cut(s) | 675, 884, 1508, 1610 |
| SpeI | ACTAGT | 1 cut(s) | 1781 |
| SphI | GCATGC | 2 cut(s) | 473, 1823 |
| SsiI | CCGC | 9 cut(s) | 11, 15, 24, 58, 244, 784, 1463, 2133, 2197 |
| SspMI | CTAG | 7 cut(s) | 134, 261, 482, 995, 1782, 2022, 2361 |
| SstI | GAGCTC | 1 cut(s) | 2471 |
| StyD4I | CCNGG | 4 cut(s) | 497, 654, 1159, 2290 |
| StyI | CCWWGG | 3 cut(s) | 1453, 1629, 2201 |
| TaaI | ACNGT | 6 cut(s) | 705, 868, 1290, 1622, 1816, 2030 |
| TaiI | ACGT | 2 cut(s) | 562, 793 |
| TaqI | TCGA | 7 cut(s) | 200, 520, 1095, 1262, 1509, 1749, 1931 |
| TaqII | GACCGA | 1 cut(s) | 1207 |
| TatI | WGTACW | 1 cut(s) | 2380 |
| TauI | GCSGC | 3 cut(s) | 14, 17, 2135 |
| TfiI | GAWTC | 6 cut(s) | 929, 1397, 1469, 1604, 2257, 2333 |
| TscAI | CASTG | 5 cut(s) | 1295, 1495, 1627, 1979, 2187 |
| TseFI | GTSAC | 3 cut(s) | 560, 1168, 2024 |
| Tsp45I | GTSAC | 3 cut(s) | 560, 1168, 2024 |
| TspRI | CASTG | 5 cut(s) | 1295, 1495, 1627, 1979, 2187 |
| VpaK11BI | GGWCC | 1 cut(s) | 1219 |
| XapI | RAATTY | 4 cut(s) | 949, 1042, 1569, 1917 |
| XceI | RCATGY | 4 cut(s) | 374, 473, 1232, 1823 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 430 |
| XhoI | CTCGAG | 1 cut(s) | 1508 |
| XmnI | GAANNNNTTC | 3 cut(s) | 513, 684, 1843 |
| XspI | CTAG | 7 cut(s) | 134, 261, 482, 995, 1782, 2022, 2361 |
| Zsp2I | ATGCAT | 3 cut(s) | 864, 964, 1197 |