Rmu_sc0006862.1_g000005

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006862.1
OG0002123
Physical Location & Seq
Reverse (-)
17914 .. 19519
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006862.1_g000005.1.cds

Sequence Viewer

Length: 1011 bp
atgatgacgactactccccgaaggcagatgacgccggaacaagtcttgctggccactgaggactccctcgggccagacagcgccggaaagccggcaagaggccaccgaggactctgccgtttcaccgcattcccaaacggcttcgccgtccacttttcggcactctcgctcttagctcaccaggacgacgacgactccccgagaccagatgactgcgaagtgttggtttgtaattgcggcgatagtaccagagtgcatatgatcaagtcgaatccagcagcttattctatagttgaccaagttcctagtgttccaattggtcctttgtctctacttgggatgcctccctttcttccacccggacatgtgactggtatgcatccatttgttctgcatcaacctggggttccccattccatgccaccacagcttcctcaatcacatatggggaattttcactcaatacctgcaatgtcatctctccaacagtggcagaaccaacaggctccgtccgagagtttgcagatagctacacaaactgaacctccatcttcccaaaatgatcaaaacctgataagatcaaatgcaaagtatcactatgaaacttctgttaatgggcaaccatttcatcaagactatttggatgttcaaatttgcgaaggggcagagcctaagcctgtgatatcatcttcccccgaggaagcacaggcatatgagcagaatgttcagaccttgatcgatcatgggttggacggacaagttttaacggctgagaaaccaaattctgctaccaagtcctcaaaatctgacactccaatccatggagctcctctggacagatcaatggccaatggccggctgagctcaaattttgttgggaaacagcatgacaggtatgcctctaaaccttcaaacatacttggaagacacttgaactcgtttcctgtattttgctcattgtgttgttactttgacatgatgactaattctgcatttacctccagaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

36.75

Weight (kDa)

6.02

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccB7I CCANNNNNTGG 1 cut(s) 821
AciI CCGC 2 cut(s) 126, 237
AcoI YGGCCR 3 cut(s) 51, 846, 853
AcsI RAATTY 4 cut(s) 451, 651, 781, 868
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 4 cut(s) 98, 157, 821, 855
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 3 cut(s) 650, 912, 934
AjnI CCWGG 2 cut(s) 180, 400
AluBI AGCT 6 cut(s) 176, 281, 430, 530, 827, 864
AluI AGCT 6 cut(s) 176, 281, 430, 530, 827, 864
Alw21I GWGCWC 2 cut(s) 829, 866
Alw26I GTCTC 2 cut(s) 196, 333
Ama87I CYCGRG 3 cut(s) 68, 199, 695
AoxI GGCC 5 cut(s) 51, 71, 100, 846, 853
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 4 cut(s) 451, 651, 781, 868
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 71, 320
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 115, 170
AvaI CYCGRG 3 cut(s) 68, 199, 695
AvaII GGWCC 1 cut(s) 320
BalI TGGCCA 2 cut(s) 53, 848
BanII GRGCYC 2 cut(s) 829, 866
BbsI GAAGAC 1 cut(s) 931
Bbv12I GWGCWC 2 cut(s) 829, 866
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 556
BceAI ACGGC 4 cut(s) 102, 131, 154, 783
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 2 cut(s) 182, 402
BclI TGATCA 2 cut(s) 261, 562
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 196, 333
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 2 cut(s) 238, 279
BlpI GCTNAGC 1 cut(s) 860
BlsI GCNGC 2 cut(s) 239, 280
Bme1390I CCNGG 3 cut(s) 182, 360, 402
Bme18I GGWCC 1 cut(s) 320
BmeT110I CYCGRG 3 cut(s) 68, 199, 695
BmgT120I GGNCC 2 cut(s) 71, 320
BmiI GGNNCC 2 cut(s) 408, 507
BmrFI CCNGG 3 cut(s) 182, 360, 402
BmsI GCATC 3 cut(s) 330, 388, 403
BpiI GAAGAC 1 cut(s) 931
BpmI CTGGAG 1 cut(s) 985
Bpu10I CCTNAGC 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 860
BpuMI CCSGG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 5 cut(s) 67, 106, 401, 696, 820
BsaXI ACNNNNNCTCC 5 cut(s) 28, 179, 209, 529, 559
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 157, 821, 855
Bse118I RCCGGY 2 cut(s) 91, 855
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 477
BseBI CCWGG 2 cut(s) 182, 402
BseCI ATCGAT 1 cut(s) 738
BseDI CCNNGG 5 cut(s) 67, 106, 401, 696, 820
BseGI GGATG 3 cut(s) 345, 379, 649
BseLI CCNNNNNNNGG 4 cut(s) 98, 157, 821, 855
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 3 cut(s) 48, 762, 851
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 819
BseXI GCAGC 1 cut(s) 290
BshFI GGCC 5 cut(s) 53, 73, 102, 848, 855
BshVI ATCGAT 1 cut(s) 738
BsiHKAI GWGCWC 2 cut(s) 829, 866
BsiHKCI CYCGRG 3 cut(s) 68, 199, 695
BsiSI CCGG 5 cut(s) 35, 84, 92, 360, 856
BslI CCNNNNNNNGG 4 cut(s) 98, 157, 821, 855
BsmAI GTCTC 2 cut(s) 196, 333
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 5 cut(s) 53, 73, 102, 848, 855
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 3 cut(s) 68, 199, 695
Bsp1286I GDGCHC 2 cut(s) 829, 866
Bsp143I GATC 6 cut(s) 261, 562, 578, 735, 739, 839
Bsp1720I GCTNAGC 1 cut(s) 860
Bsp19I CCATGG 1 cut(s) 820
BspACI CCGC 2 cut(s) 126, 237
BspANI GGCC 5 cut(s) 53, 73, 102, 848, 855
BspCNI CTCAG 3 cut(s) 49, 763, 852
BspDI ATCGAT 1 cut(s) 738
BspLI GGNNCC 2 cut(s) 408, 507
BspMI ACCTGC 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 2 cut(s) 91, 855
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 2 cut(s) 91, 855
BssECI CCNNGG 5 cut(s) 67, 106, 401, 696, 820
BssMI GATC 6 cut(s) 261, 562, 578, 735, 739, 839
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 820
Bst2UI CCWGG 2 cut(s) 182, 402
Bst4CI ACNGT 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 51, 93, 857
BstDEI CTNAG 5 cut(s) 57, 172, 672, 771, 860
BstDSI CCRYGG 1 cut(s) 820
BstF5I GGATG 3 cut(s) 345, 379, 649
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 6 cut(s) 264, 565, 581, 738, 742, 842
BstMAI GTCTC 2 cut(s) 196, 333
BstMBI GATC 6 cut(s) 261, 562, 578, 735, 739, 839
BstMWI GCNNNNNNNGC 3 cut(s) 31, 427, 861
BstNI CCWGG 2 cut(s) 182, 402
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 180, 358, 400
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 931
Bsu15I ATCGAT 1 cut(s) 738
BsuRI GGCC 5 cut(s) 53, 73, 102, 848, 855
BsuTUI ATCGAT 1 cut(s) 738
BtgI CCRYGG 1 cut(s) 820
BtsCI GGATG 3 cut(s) 345, 379, 649
BtsIMutI CAGTG 2 cut(s) 54, 494
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 3 cut(s) 51, 93, 857
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 91, 855
Cfr13I GGNCC 2 cut(s) 71, 320
ClaI ATCGAT 1 cut(s) 738
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 246
CviAII CATG 6 cut(s) 365, 418, 743, 821, 887, 976
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 5 cut(s) 57, 172, 672, 771, 860
DpnI GATC 6 cut(s) 263, 564, 580, 737, 741, 841
DpnII GATC 6 cut(s) 261, 562, 578, 735, 739, 839
EaeI YGGCCR 3 cut(s) 51, 846, 853
Ecl136II GAGCTC 2 cut(s) 827, 864
Eco130I CCWWGG 1 cut(s) 820
Eco24I GRGCYC 2 cut(s) 829, 866
Eco31I GGTCTC 1 cut(s) 196
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 320
Eco53kI GAGCTC 2 cut(s) 827, 864
Eco88I CYCGRG 3 cut(s) 68, 199, 695
EcoICRI GAGCTC 2 cut(s) 827, 864
EcoRII CCWGG 2 cut(s) 180, 400
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 820
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 2 cut(s) 829, 866
ErhI CCWWGG 1 cut(s) 820
FaeI CATG 6 cut(s) 368, 421, 746, 824, 890, 979
FatI CATG 6 cut(s) 364, 417, 742, 820, 886, 975
FauNDI CATATG 3 cut(s) 258, 444, 712
FbaI TGATCA 2 cut(s) 261, 562
Fnu4HI GCNGC 2 cut(s) 238, 279
FokI GGATG 3 cut(s) 352, 366, 656
FriOI GRGCYC 2 cut(s) 829, 866
Fsp4HI GCNGC 2 cut(s) 238, 279
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 238, 279
GsuI CTGGAG 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 5 cut(s) 53, 73, 102, 848, 855
HapII CCGG 5 cut(s) 35, 84, 92, 360, 856
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 6 cut(s) 368, 421, 746, 824, 890, 979
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 4 cut(s) 62, 111, 194, 271
HpaII CCGG 5 cut(s) 35, 84, 92, 360, 856
HphI GGTGA 2 cut(s) 115, 170
Hpy166II GTNNAC 2 cut(s) 151, 295
Hpy188I TCNGA 3 cut(s) 514, 729, 808
Hpy188III TCNNGA 3 cut(s) 632, 833, 1002
Hpy8I GTNNAC 2 cut(s) 151, 295
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 3 cut(s) 15, 653, 918
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 7 cut(s) 256, 379, 394, 470, 523, 587, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 427, 861
HpyF3I CTNAG 5 cut(s) 57, 172, 672, 771, 860
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 6 cut(s) 368, 421, 746, 824, 890, 979
HspAI GCGC 1 cut(s) 81
KroI GCCGGC 2 cut(s) 91, 855
KroNI GCCGGC 2 cut(s) 93, 857
Ksp22I TGATCA 2 cut(s) 261, 562
Kzo9I GATC 6 cut(s) 261, 562, 578, 735, 739, 839
LmnI GCTCC 3 cut(s) 511, 824, 832
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 3 cut(s) 330, 388, 403
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 367, 965
MalI GATC 6 cut(s) 263, 564, 580, 737, 741, 841
MboI GATC 6 cut(s) 261, 562, 578, 735, 739, 839
MboII GAAGA 4 cut(s) 344, 543, 681, 936
MfeI CAATTG 1 cut(s) 315
MhlI GDGCHC 2 cut(s) 829, 866
MlsI TGGCCA 2 cut(s) 53, 848
MluCI AATT 7 cut(s) 232, 315, 451, 651, 781, 868, 985
MluNI TGGCCA 2 cut(s) 53, 848
MlyI GAGTC 3 cut(s) 56, 105, 188
MmeI TCCRAC 2 cut(s) 508, 729
Mox20I TGGCCA 2 cut(s) 53, 848
Mph1103I ATGCAT 1 cut(s) 381
MroNI GCCGGC 2 cut(s) 91, 855
MscI TGGCCA 2 cut(s) 53, 848
MseI TTAA 2 cut(s) 612, 764
Msp20I TGGCCA 2 cut(s) 53, 848
MspI CCGG 5 cut(s) 35, 84, 92, 360, 856
MspR9I CCNGG 3 cut(s) 182, 360, 402
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 2 cut(s) 182, 402
MwoI GCNNNNNNNGC 3 cut(s) 31, 427, 861
NaeI GCCGGC 2 cut(s) 93, 857
NciI CCSGG 1 cut(s) 360
NcoI CCATGG 1 cut(s) 820
NdeI CATATG 3 cut(s) 258, 444, 712
NdeII GATC 6 cut(s) 261, 562, 578, 735, 739, 839
NgoMIV GCCGGC 2 cut(s) 91, 855
NlaIII CATG 6 cut(s) 368, 421, 746, 824, 890, 979
NlaIV GGNNCC 2 cut(s) 408, 507
NmuCI GTSAC 1 cut(s) 367
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 1 cut(s) 368
PciI ACATGT 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 128
PdiI GCCGGC 2 cut(s) 93, 857
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 2 cut(s) 239, 280
PleI GAGTC 3 cut(s) 56, 105, 188
PpsI GAGTC 3 cut(s) 56, 105, 188
PscI ACATGT 1 cut(s) 364
Psp124BI GAGCTC 2 cut(s) 829, 866
Psp6I CCWGG 2 cut(s) 180, 400
PspGI CCWGG 2 cut(s) 180, 400
PspN4I GGNNCC 2 cut(s) 408, 507
PspPI GGNCC 2 cut(s) 71, 320
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SacI GAGCTC 2 cut(s) 829, 866
SaqAI TTAA 2 cut(s) 612, 764
SatI GCNGC 2 cut(s) 238, 279
Sau3AI GATC 6 cut(s) 261, 562, 578, 735, 739, 839
Sau96I GGNCC 2 cut(s) 71, 320
SchI GAGTC 3 cut(s) 56, 105, 188
ScrFI CCNGG 3 cut(s) 182, 360, 402
SduI GDGCHC 2 cut(s) 829, 866
SfaNI GCATC 3 cut(s) 330, 388, 403
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 320
Sse9I AATT 7 cut(s) 232, 315, 451, 651, 781, 868, 985
SsiI CCGC 2 cut(s) 126, 237
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 2 cut(s) 829, 866
StyD4I CCNGG 3 cut(s) 180, 358, 400
StyI CCWWGG 1 cut(s) 820
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 269, 738
TasI AATT 7 cut(s) 232, 315, 451, 651, 781, 868, 985
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 612, 764
Tru9I TTAA 2 cut(s) 612, 764
TscAI CASTG 2 cut(s) 61, 494
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 615, 617
TspGWI ACGGA 2 cut(s) 498, 768
TspRI CASTG 2 cut(s) 61, 494
Van91I CCANNNNNTGG 1 cut(s) 821
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 4 cut(s) 451, 651, 781, 868
XceI RCATGY 1 cut(s) 368
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.