Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Reverse (-)

53457979 .. 53464139

Gene Structure 6161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0435200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGAGAGGGAAGATTCAGATGAAAAGAATCGAAAATGCGACAAGCAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGTTGTTGAAGAAGGCTTATGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTGATCATCTTTTCTCAGAGTGGCAGGCTCTACGAGTTTTCCAGCTCTGACATGCAAAAGACTATAAACCAATACCATAAACATGCAAAAGGTGTGCAAACCAACACTATTGAAGTGGAACAGTGTATGCAGCAATCGAAGCATGAATCAGCTGACATGGCCAAGAAGATTGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTAGATTCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGAGCGAAGCTTGTGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGGAGCAGATAGAACGACTAAAAGAAAAGGGGAGGCTCCTCTTAGAAGAGAATGTAAAACTACACACAGAGTGTGGTGCAAGGCGTTGTCAGAAACCTTTAATTCAAAAAAAAGGAGTTGGGGCGGCAAGTTGTAACTGGATGAATAGTAGTCAAAGTAGCAGCAGTCAAACAATTAGTAATTCAGATCAGGTAGAGACTAGATTGTTCATCGGACCGCCAGTGATGCACTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.59

Weight (kDa)

9.18

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.9e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	87 - 170	3.9e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	2 cut(s)	563, 656
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	510
AfaI	GTAC	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	88, 245, 545
AluBI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
AluI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	262, 600
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	274, 612
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	2 cut(s)	311, 639
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	263, 564, 601
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	3 cut(s)	264, 565, 602
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	2 cut(s)	109, 654
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
Bpu1102I	GCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	581, 659
Bse8I	GATNNNNATC	1 cut(s)	305
BseGI	GGATG	1 cut(s)	585
BseJI	GATNNNNATC	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	161, 443
BseNI	ACTGG	2 cut(s)	581, 659
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	274, 612
BshFI	GGCC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	135, 306, 378, 625
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	2 cut(s)	563, 656
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	160, 442
BspLI	GGNNCC	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	581, 659
BssMI	GATC	4 cut(s)	135, 306, 378, 625
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	50, 158, 389
BstDEI	CTNAG	4 cut(s)	147, 346, 429, 481
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	585
BstKTI	GATC	4 cut(s)	138, 309, 381, 628
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	4 cut(s)	135, 306, 378, 625
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 271, 290, 664
BstNSI	RCATGY	2 cut(s)	187, 218
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	274, 612
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 260, 666
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 158, 389
Cfr13I	GGNCC	1 cut(s)	653
CpoI	CGGWCCG	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	413
CspI	CGGWCCG	1 cut(s)	653
CviAII	CATG	6 cut(s)	184, 215, 275, 289, 341, 439
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	147, 346, 429, 481
DpnI	GATC	4 cut(s)	137, 308, 380, 627
DpnII	GATC	4 cut(s)	135, 306, 378, 625
DraIII	CACNNNGTG	1 cut(s)	510
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	6 cut(s)	183, 214, 274, 288, 340, 438
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	263, 564, 601
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	3 cut(s)	263, 564, 601
FspBI	CTAG	2 cut(s)	311, 639
GluI	GCNGC	3 cut(s)	263, 564, 601
HaeIII	GGCC	1 cut(s)	293
Hin1II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
HindIII	AAGCTT	2 cut(s)	315, 400
HinfI	GANTC	4 cut(s)	16, 30, 278, 350
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	8 cut(s)	21, 150, 181, 378, 531, 625, 653, 673
Hpy188III	TCNNGA	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	8 cut(s)	131, 187, 218, 229, 262, 408, 518, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 271, 290, 664
HpyF3I	CTNAG	4 cut(s)	147, 346, 429, 481
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	135, 306, 378, 625
LmnI	GCTCC	2 cut(s)	442, 480
LpnPI	CCDG	8 cut(s)	34, 38, 142, 187, 401, 562, 614, 672
Lsp1109I	GCAGC	2 cut(s)	274, 612
LweI	GCATC	2 cut(s)	109, 654
MaeI	CTAG	2 cut(s)	311, 639
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	55, 572
MalI	GATC	4 cut(s)	137, 308, 380, 627
MboI	GATC	4 cut(s)	135, 306, 378, 625
MboII	GAAGA	4 cut(s)	25, 100, 310, 497
MflI	RGATCY	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	540, 612, 619
MluNI	TGGCCA	1 cut(s)	293
MnlI	CCTC	3 cut(s)	321, 465, 488
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	539
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	128, 271, 290, 664
NdeII	GATC	4 cut(s)	135, 306, 378, 625
NlaIII	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
NlaIV	GGNNCC	1 cut(s)	476
NspI	RCATGY	2 cut(s)	187, 218
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	16, 30, 278, 350
PkrI	GCNGC	3 cut(s)	264, 565, 602
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	213
Rsr2I	CGGWCCG	1 cut(s)	653
RsrII	CGGWCCG	1 cut(s)	653
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	3 cut(s)	263, 564, 601
Sau3AI	GATC	4 cut(s)	135, 306, 378, 625
Sau96I	GGNCC	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	109, 654
Sfr274I	CTCGAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	653
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	363, 392
SmoI	CTYRAG	2 cut(s)	363, 392
Sse9I	AATT	3 cut(s)	540, 612, 619
SsiI	CCGC	2 cut(s)	563, 656
SspMI	CTAG	2 cut(s)	311, 639
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	5 cut(s)	33, 65, 73, 269, 393
TasI	AATT	3 cut(s)	540, 612, 619
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	4 cut(s)	16, 30, 278, 350
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	3 cut(s)	138, 260, 666
TseI	GCWGC	2 cut(s)	262, 600
TspDTI	ATGAA	5 cut(s)	38, 291, 427, 596, 637
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	3 cut(s)	138, 260, 666
VpaK11BI	GGWCC	1 cut(s)	653
XceI	RCATGY	2 cut(s)	187, 218
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	2 cut(s)	311, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.