Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002123

Physical Location & Seq

Genomic Coordinates Forward (+)

67395442 .. 67398467

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAGCGGTACGCCTGGGCCAAAGAGAGCCTTCTCAGAGAACAGAACAAAGAATTAGCAACTTCCAGCGTGACCATTCAGAAGCTGAAAGAGCCCAGCATATACAGCAATTACATGATCTTCAAGAACATATTCAATAAAAAGAGAGGCAACTTATTGAGTTGCAGGAACAGGCTTGCTCAAGAAGCCATTCTATTTAAGGATGAACAACTGAGCGAAGCACAAGCTTGGATCACCCGTGTTCAAGAAATGGATGCTTTGCAGTCAACTACACTTCAAAATCAGTTGCGGGAACATTCAGAACACTATAATCAGCTCTGGCTTGCTTTGTCAAAGACAGGTTGGTTATTTGCTGAAATGGAGAGACATCATATGCATACGGTACAACAGCTTCAGCTTGAGTTAGCTGATGCTAGACAAAGAAATGGAACTTACACTGATGAATCACGTGCAGCAAATTCAACTTCAAAGGATGCATCTCAGTTTGGTCGGAACAATGGGAACCAGATTGATATAAATACGTCAAATGGAAATCCAGGTGCCCTCCCAAATGGGAATTCACAGGTCGTTTCATCGTTTTCTTCAACTGTCAATGCATCAAGTCAGGTTGACCATGTTCCTACTGTTCCAATTGGTCCTTCGTCTCTACTTGGGATGCCTCCCTTTCTTCCACCTGGACTGGTGACTGGTATGCATCCATTTGTTCTGGATCAACCTGGGGTTCCCCATTCCATGCCACCACAGGTTCCTCAATCACATGTGGGGAATTTTCACTCAATACCTGCAATGTCATCTCTCCAACAGTGGCAGAACCAACAGGCTCCGTCCGAGAGTTTGCAGATAGCTACACAAACTGAACCTCCATCTTCCCAAAATGATCAAAACCTGATAAGATTAGATGCAAAGTATCACTATGAAACTTCTGTTAATGGGCAACCATTTCATCAAGACTATTTGGATGTTCAAATTCGCCAAGGGGCAGAGCCTGAGCCTGTGATATCATCTTCCCCCGAGGAAGCACAGGTTCTTGAGTCAATTAATAGCAGTTACTTGGTCTCACCCCAAACTGATCAGAGCTTGCAACAAATGTCTTACCAATTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

41.27

Weight (kDa)

5.73

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53620 AT5G53620 AT5G53620
fragaria_vesca	FvH4_7g32660 FvH4_7g32660 FvH4_7g32660 FvH4_7g32660
malus_domestica	MD01G1227300.v1.1 MD07G1297600.v1.1
prunus_persica	Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1 Prupe.2G317300_v2.0.a1
pyrus_communis	pycom01g23540 pycom07g27000
rosa_chinensis	RchiOBHm_Chr1g0382521 RchiOBHm_Chr1g0382561 RchiOBHm_Chr1g0382611 RchiOBHm_Chr1g0382631 RchiOBHm_Chr1g0382641
rosa_laevigata	RLG00000026170
rosa_multiflora	Rmu_co8064912.1_g000001 Rmu_sc0000110.1_g000056 Rmu_sc0006862.1_g000005 Rmu_sc0006862.1_g000008 Rmu_sc0006862.1_g000011 Rmu_sc0017237.1_g000002 Rmu_sc0017237.1_g000006
rosa_roxburghii	Rroxscaffold_1G00051710 Rroxscaffold_4G00277980 Rroxscaffold_4G00277990
rosa_rugosa	Rorug01G0435100 Rorug01G0435200 Rorug01G0435300 Rorug01G0435300
rosa_samantha	Rh1AG460200 Rh1BG416400 Rh1BG416500 Rh1BG416800 Rh1CG430200 Rh1DG448800 Rh1DG449000
rosa_wichuraiana	Rw1G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	790
AccB1I	GGYRCC	1 cut(s)	539
AciI	CCGC	2 cut(s)	7, 289
AclWI	GGATC	2 cut(s)	239, 717
AcsI	RAATTY	4 cut(s)	457, 556, 766, 966
AcuI	CTGAAG	1 cut(s)	377
AcvI	CACGTG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	11, 384
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	8 cut(s)	124, 136, 245, 278, 462, 468, 585, 965
AjnI	CCWGG	4 cut(s)	14, 535, 673, 715
AjuI	GAANNNNNNNTTGG	4 cut(s)	541, 573, 622, 654
AluBI	AGCT	8 cut(s)	85, 227, 316, 391, 397, 407, 845, 1077
AluI	AGCT	8 cut(s)	85, 227, 316, 391, 397, 407, 845, 1077
Alw26I	GTCTC	3 cut(s)	358, 648, 1060
AlwI	GGATC	2 cut(s)	239, 717
AlwNI	CAGNNNCTG	2 cut(s)	85, 986
Ama87I	CYCGRG	1 cut(s)	1010
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	4 cut(s)	457, 556, 766, 966
AseI	ATTAAT	1 cut(s)	1038
Asp700I	GAANNNNTTC	2 cut(s)	131, 189
AspS9I	GGNCC	2 cut(s)	18, 635
AsuHPI	GGTGA	3 cut(s)	226, 694, 1050
AvaI	CYCGRG	1 cut(s)	1010
AvaII	GGWCC	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	544
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BbrPI	CACGTG	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	1 cut(s)	871
BciT130I	CCWGG	4 cut(s)	16, 537, 675, 717
BclI	TGATCA	2 cut(s)	877, 1069
BcoDI	GTCTC	3 cut(s)	358, 648, 1060
BfaI	CTAG	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	790
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	4 cut(s)	16, 537, 675, 717
Bme18I	GGWCC	1 cut(s)	635
BmeT110I	CYCGRG	1 cut(s)	1010
BmgT120I	GGNCC	2 cut(s)	18, 635
BmiI	GGNNCC	5 cut(s)	503, 541, 723, 747, 822
BmrFI	CCNGG	4 cut(s)	16, 537, 675, 717
BmsI	GCATC	8 cut(s)	244, 400, 463, 485, 605, 645, 703, 889
Bpu10I	CCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	3 cut(s)	165, 419, 1049
BsaAI	YACGTR	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	1060
BsaJI	CCNNGG	4 cut(s)	15, 716, 973, 1011
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bse1I	ACTGG	2 cut(s)	684, 691
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	4 cut(s)	16, 537, 675, 717
BseDI	CCNNGG	4 cut(s)	15, 716, 973, 1011
BseGI	GGATG	6 cut(s)	208, 259, 478, 660, 694, 964
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	4 cut(s)	49, 203, 494, 978
BseNI	ACTGG	2 cut(s)	684, 691
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	1 cut(s)	464
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	1010
BsmAI	GTCTC	3 cut(s)	358, 648, 1060
BsmBI	CGTCTC	1 cut(s)	648
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	1060
BsoBI	CYCGRG	1 cut(s)	1010
Bsp1286I	GDGCHC	2 cut(s)	96, 544
Bsp143I	GATC	5 cut(s)	117, 231, 709, 877, 1069
BspACI	CCGC	2 cut(s)	7, 289
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	4 cut(s)	48, 204, 493, 979
BspLI	GGNNCC	5 cut(s)	503, 541, 723, 747, 822
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	2 cut(s)	239, 717
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	1060
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	684, 691
BssECI	CCNNGG	4 cut(s)	15, 716, 973, 1011
BssMI	GATC	5 cut(s)	117, 231, 709, 877, 1069
BssT1I	CCWWGG	1 cut(s)	973
Bst2UI	CCWGG	4 cut(s)	16, 537, 675, 717
Bst4CI	ACNGT	4 cut(s)	382, 589, 625, 804
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	3 cut(s)	177, 324, 1079
BstDEI	CTNAG	4 cut(s)	35, 212, 480, 987
BstF5I	GGATG	6 cut(s)	208, 259, 478, 660, 694, 964
BstKTI	GATC	5 cut(s)	120, 234, 712, 880, 1072
BstMAI	GTCTC	3 cut(s)	358, 648, 1060
BstMBI	GATC	5 cut(s)	117, 231, 709, 877, 1069
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 105, 185
BstNI	CCWGG	4 cut(s)	16, 537, 675, 717
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	4 cut(s)	14, 535, 673, 715
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	6 cut(s)	208, 259, 478, 660, 694, 964
BtsIMutI	CAGTG	2 cut(s)	435, 809
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	3 cut(s)	177, 324, 1079
CaiI	CAGNNNCTG	2 cut(s)	85, 986
Cfr13I	GGNCC	2 cut(s)	18, 635
Csp6I	GTAC	2 cut(s)	10, 383
CviAII	CATG	4 cut(s)	115, 614, 733, 758
CviQI	GTAC	2 cut(s)	10, 383
DdeI	CTNAG	4 cut(s)	35, 212, 480, 987
DpnI	GATC	5 cut(s)	119, 233, 711, 879, 1071
DpnII	GATC	5 cut(s)	117, 231, 709, 877, 1069
Eco130I	CCWWGG	1 cut(s)	973
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	1060
Eco32I	GATATC	1 cut(s)	999
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	377
Eco72I	CACGTG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	4 cut(s)	14, 535, 673, 715
EcoRV	GATATC	1 cut(s)	999
EcoT14I	CCWWGG	1 cut(s)	973
EcoT22I	ATGCAT	4 cut(s)	378, 478, 598, 696
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	973
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	4 cut(s)	118, 617, 736, 761
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	4 cut(s)	114, 613, 732, 757
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	877, 1069
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	6 cut(s)	215, 266, 485, 667, 681, 971
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	1 cut(s)	453
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	118, 617, 736, 761
HincII	GTYRAC	2 cut(s)	267, 610
HindII	GTYRAC	2 cut(s)	267, 610
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	2 cut(s)	443, 1031
HphI	GGTGA	3 cut(s)	226, 694, 1050
Hpy166II	GTNNAC	2 cut(s)	267, 610
Hpy188I	TCNGA	6 cut(s)	38, 81, 301, 492, 829, 1074
Hpy188III	TCNNGA	6 cut(s)	124, 182, 245, 707, 947, 1028
Hpy8I	GTNNAC	2 cut(s)	267, 610
HpyAV	CCTTC	2 cut(s)	41, 648
HpyCH4III	ACNGT	4 cut(s)	382, 589, 625, 804
HpyCH4IV	ACGT	2 cut(s)	448, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 105, 185
HpyF3I	CTNAG	4 cut(s)	35, 212, 480, 987
HpySE526I	ACGT	2 cut(s)	448, 521
Hsp92II	CATG	4 cut(s)	118, 617, 736, 761
Ksp22I	TGATCA	2 cut(s)	877, 1069
Kzo9I	GATC	5 cut(s)	117, 231, 709, 877, 1069
LmnI	GCTCC	1 cut(s)	826
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	8 cut(s)	244, 400, 463, 485, 605, 645, 703, 889
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	2 cut(s)	448, 521
MaeIII	GTNAC	3 cut(s)	70, 682, 1046
MalI	GATC	5 cut(s)	119, 233, 711, 879, 1071
MboI	GATC	5 cut(s)	117, 231, 709, 877, 1069
MboII	GAAGA	5 cut(s)	112, 573, 659, 858, 996
MfeI	CAATTG	1 cut(s)	630
MhlI	GDGCHC	2 cut(s)	96, 544
MluCI	AATT	9 cut(s)	53, 109, 457, 556, 630, 766, 966, 1035, 1097
MlyI	GAGTC	1 cut(s)	1040
MmeI	TCCRAC	2 cut(s)	470, 823
MnlI	CCTC	6 cut(s)	140, 554, 669, 759, 870, 1006
Mph1103I	ATGCAT	4 cut(s)	378, 478, 598, 696
MroXI	GAANNNNTTC	2 cut(s)	131, 189
MseI	TTAA	4 cut(s)	198, 927, 1038, 1101
MspR9I	CCNGG	4 cut(s)	16, 537, 675, 717
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	4 cut(s)	16, 537, 675, 717
MwoI	GCNNNNNNNGC	3 cut(s)	91, 105, 185
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	5 cut(s)	117, 231, 709, 877, 1069
NlaIII	CATG	4 cut(s)	118, 617, 736, 761
NlaIV	GGNNCC	5 cut(s)	503, 541, 723, 747, 822
NmuCI	GTSAC	2 cut(s)	70, 682
NsiI	ATGCAT	4 cut(s)	378, 478, 598, 696
NspI	RCATGY	1 cut(s)	761
PciI	ACATGT	1 cut(s)	757
PdmI	GAANNNNTTC	2 cut(s)	131, 189
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	1 cut(s)	1039
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	1039
Ppu21I	YACGTR	1 cut(s)	449
PscI	ACATGT	1 cut(s)	757
PshBI	ATTAAT	1 cut(s)	1038
Psp6I	CCWGG	4 cut(s)	14, 535, 673, 715
PspCI	CACGTG	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	4 cut(s)	14, 535, 673, 715
PspN4I	GGNNCC	5 cut(s)	503, 541, 723, 747, 822
PspPI	GGNCC	2 cut(s)	18, 635
PstNI	CAGNNNCTG	2 cut(s)	85, 986
RsaI	GTAC	2 cut(s)	11, 384
RsaNI	GTAC	2 cut(s)	10, 383
SaqAI	TTAA	4 cut(s)	198, 927, 1038, 1101
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	5 cut(s)	117, 231, 709, 877, 1069
Sau96I	GGNCC	2 cut(s)	18, 635
SchI	GAGTC	1 cut(s)	1040
ScrFI	CCNGG	4 cut(s)	16, 537, 675, 717
SduI	GDGCHC	2 cut(s)	96, 544
SfaNI	GCATC	8 cut(s)	244, 400, 463, 485, 605, 645, 703, 889
SinI	GGWCC	1 cut(s)	635
SmlI	CTYRAG	3 cut(s)	180, 398, 1028
SmoI	CTYRAG	3 cut(s)	180, 398, 1028
Sse9I	AATT	9 cut(s)	53, 109, 457, 556, 630, 766, 966, 1035, 1097
SsiI	CCGC	2 cut(s)	7, 289
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	4 cut(s)	14, 535, 673, 715
StyI	CCWWGG	1 cut(s)	973
TaaI	ACNGT	4 cut(s)	382, 589, 625, 804
TaiI	ACGT	2 cut(s)	451, 524
TasI	AATT	9 cut(s)	53, 109, 457, 556, 630, 766, 966, 1035, 1097
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	4 cut(s)	198, 927, 1038, 1101
Tru9I	TTAA	4 cut(s)	198, 927, 1038, 1101
TscAI	CASTG	2 cut(s)	442, 809
TseFI	GTSAC	2 cut(s)	70, 682
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	2 cut(s)	70, 682
TspDTI	ATGAA	6 cut(s)	17, 219, 456, 561, 930, 932
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	2 cut(s)	442, 809
VpaK11BI	GGWCC	1 cut(s)	635
VspI	ATTAAT	1 cut(s)	1038
XapI	RAATTY	4 cut(s)	457, 556, 766, 966
XceI	RCATGY	1 cut(s)	761
XmnI	GAANNNNTTC	2 cut(s)	131, 189
XspI	CTAG	1 cut(s)	414
Zsp2I	ATGCAT	4 cut(s)	378, 478, 598, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.